Rh5BG243100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004468
Physical Location & Seq
Reverse (-)
29362328 .. 29369166
6839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG243100.1

Sequence Viewer

Length: 261 bp
ATGGCGCCGTGGATCGCTGCAACTCGCCAACTCGTGAATATGGCGCGGCTTTCCTCTCCCAAGTCCGTTAATAACGCTAAAGCCTTTTCCCTCCTCCAACGGCGAGGCCACGCCGGCGGTGCTGATATTATACATGAATTAACACTTATTATCATGGACCTCCAAAGATCACAGTTCGAGAAGTGCCACGCTAGCCTTTTGCTTGTTCTTGATTATGTATGCGGACAAATAAAACGGACTCTATATTCCATCCTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.62

Weight (kDa)

9.78

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 46
AciI CCGC 3 cut(s) 46, 117, 222
AclWI GGATC 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 5
AlwI GGATC 1 cut(s) 20
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 2 cut(s) 7, 46
AspS9I GGNCC 1 cut(s) 157
AsuNHI GCTAGC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 32
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 116
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 2 cut(s) 18, 47
BlsI GCNGC 2 cut(s) 19, 48
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 12, 167
BspACI CCGC 3 cut(s) 46, 117, 222
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 2 cut(s) 12, 167
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 115, 193
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 249
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 46
BstKTI GATC 2 cut(s) 15, 170
BstMBI GATC 2 cut(s) 12, 167
BstMWI GCNNNNNNNGC 3 cut(s) 114, 119, 192
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 115, 193
CfoI GCGC 2 cut(s) 7, 46
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 157
CviAII CATG 2 cut(s) 134, 154
CviJI RGCY 4 cut(s) 49, 83, 108, 195
CviKI_1 RGCY 4 cut(s) 49, 83, 108, 195
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 14, 169
DpnII GATC 2 cut(s) 12, 167
Eco47I GGWCC 1 cut(s) 157
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 137, 157
FaiI YATR 7 cut(s) 41, 131, 135, 155, 216, 220, 244
FatI CATG 2 cut(s) 133, 153
Fnu4HI GCNGC 2 cut(s) 18, 47
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 18, 47
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 6, 45
GluI GCNGC 2 cut(s) 18, 47
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 114
HhaI GCGC 2 cut(s) 7, 46
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 137, 157
Hin6I GCGC 2 cut(s) 5, 44
HinP1I GCGC 2 cut(s) 5, 44
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 34, 178, 209
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 119, 192
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 137, 157
HspAI GCGC 2 cut(s) 5, 44
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 12, 167
LpnPI CCDG 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 192
MalI GATC 2 cut(s) 14, 169
MboI GATC 2 cut(s) 12, 167
MluCI AATT 2 cut(s) 137, 256
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 5 cut(s) 64, 98, 101, 104, 170
MreI CGCCGGCG 1 cut(s) 113
MroNI GCCGGC 1 cut(s) 113
MseI TTAA 3 cut(s) 69, 140, 259
MspI CCGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 3 cut(s) 114, 119, 192
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 12, 167
NgoMIV GCCGGC 1 cut(s) 113
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 137, 157
NlaIV GGNNCC 1 cut(s) 6
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 19, 48
PleI GAGTC 1 cut(s) 232
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 157
SaqAI TTAA 3 cut(s) 69, 140, 259
SatI GCNGC 2 cut(s) 18, 47
Sau3AI GATC 2 cut(s) 12, 167
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 232
SetI ASST 1 cut(s) 162
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 157
Sse9I AATT 2 cut(s) 137, 256
SsiI CCGC 3 cut(s) 46, 117, 222
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 137, 256
TauI GCSGC 1 cut(s) 49
Tru1I TTAA 3 cut(s) 69, 140, 259
Tru9I TTAA 3 cut(s) 69, 140, 259
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 2 cut(s) 55, 250
VpaK11BI GGWCC 1 cut(s) 157
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.