FvH4_3g20863

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004468
Physical Location & Seq
Reverse (-)
13937783 .. 13939406
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20863.t1

Sequence Viewer

Length: 255 bp
ATGGCGCCGTGGACTGCTGCAACTCGCCAAGTTGCGAATATGACGCGGCTTTCCTCTCCCAAGTCATTTCCTAACACTCAAGCTGCTTCCCTCGTCCAACGGCGTGGCCTTGCCGGCGGTGCTGGTAATTTTGTGATCGTCTCCTTAGTAGGATGGGGATTACTCATCTATGGATCTTGCAAGTTTTTCACTGGTGACAAGGACAAGAAGGTATTAAACAAGGAAGAGATCAAAGTTCGAGAAGTGCCACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.17

Weight (kDa)

10.44

Isoelectric Point (pI)

29.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 46
AciI CCGC 2 cut(s) 46, 117
AclWI GGATC 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 5
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 17, 83
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 206
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 4, 70
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 3 cut(s) 18, 47, 84
BlsI GCNGC 3 cut(s) 19, 48, 85
BmiI GGNNCC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 4, 70
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 145
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 3 cut(s) 135, 173, 228
BspACI CCGC 2 cut(s) 46, 117
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 3 cut(s) 135, 173, 228
BssNI GRCGYC 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 138, 176, 231
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 3 cut(s) 135, 173, 228
BstMWI GCNNNNNNNGC 2 cut(s) 114, 119
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 4, 70
BstX2I RGATCY 1 cut(s) 173
BstXI CCANNNNNNTGG 1 cut(s) 104
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 113
CseI GACGC 1 cut(s) 52
CviJI RGCY 3 cut(s) 49, 83, 108
CviKI_1 RGCY 3 cut(s) 49, 83, 108
DdeI CTNAG 1 cut(s) 145
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 137, 175, 230
DpnII GATC 3 cut(s) 135, 173, 228
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 145
FaiI YATR 2 cut(s) 41, 171
Fnu4HI GCNGC 3 cut(s) 18, 47, 84
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 18, 47, 84
FspBI CTAG 1 cut(s) 253
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 18, 47, 84
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 20, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 119
HpyF3I CTNAG 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 135, 173, 228
LpnPI CCDG 3 cut(s) 108, 127, 177
Lsp1109I GCAGC 2 cut(s) 4, 70
MaeI CTAG 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 194
MalI GATC 3 cut(s) 137, 175, 230
MboI GATC 3 cut(s) 135, 173, 228
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 173
MluCI AATT 1 cut(s) 127
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 64, 101
MroNI GCCGGC 1 cut(s) 113
MseI TTAA 1 cut(s) 215
MspI CCGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 114, 119
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 135, 173, 228
NgoMIV GCCGGC 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 19, 48, 85
PluTI GGCGCC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 173
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 3 cut(s) 18, 47, 84
Sau3AI GATC 3 cut(s) 135, 173, 228
SetI ASST 2 cut(s) 85, 213
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 1 cut(s) 127
SsiI CCGC 2 cut(s) 46, 117
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 253
TaqI TCGA 1 cut(s) 238
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 17, 83
Tsp45I GTSAC 1 cut(s) 194
TspRI CASTG 1 cut(s) 196
XspI CTAG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.