RLG00000033607

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004468
Physical Location & Seq
Reverse (-)
29563934 .. 29565635
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033607

Sequence Viewer

Length: 321 bp
ATGGCGCCGTGGATCGCTGCACCTCGCCAACTCGCGAATATGACGCGGCTTTCCTCTCCCAAGTCCGTTACTAACGCTAAAGCCGTTTCCCTCCTCCAACGGCGCGGCCTTGCCGGCGGTGCTGATCCTCATGGACCTCCAAAGGTGAACTTTTGGGAGGACCCCTTGAGCCCATCTAAATGGAAAAAAGAACATTTTGTGACCGTCTCCTTAGCGGGATGGGGGTTACTCATCTATGGGGGTTACAAGCTTTTCACTGGCGACAAGAACAAGAAGGAATCTAAGAAGGAAGAGATCACAGTTCGAGAAGTGCCACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

10.12

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 3 cut(s) 35, 46, 105
AciI CCGC 4 cut(s) 46, 105, 117, 215
AclWI GGATC 2 cut(s) 20, 119
AcyI GRCGYC 1 cut(s) 5
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 2 cut(s) 20, 119
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 2 cut(s) 7, 105
AspS9I GGNCC 2 cut(s) 134, 160
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 2 cut(s) 134, 160
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 4
BccI CCATC 2 cut(s) 181, 213
BceAI ACGGC 2 cut(s) 68, 116
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 3 cut(s) 18, 47, 106
BlsI GCNGC 3 cut(s) 19, 48, 107
Bme18I GGWCC 2 cut(s) 134, 160
BmgT120I GGNCC 2 cut(s) 134, 160
BmiI GGNNCC 2 cut(s) 6, 162
Bpu10I CCTNAGC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 3 cut(s) 35, 46, 105
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 3 cut(s) 12, 124, 294
Bsp68I TCGCGA 1 cut(s) 35
BspACI CCGC 4 cut(s) 46, 105, 117, 215
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 3 cut(s) 35, 46, 105
BspLI GGNNCC 2 cut(s) 6, 162
BspPI GGATC 2 cut(s) 20, 119
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 3 cut(s) 12, 124, 294
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 205, 301
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 211, 282
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 3 cut(s) 35, 46, 105
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 105
BstKTI GATC 3 cut(s) 15, 127, 297
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 3 cut(s) 12, 124, 294
BstMWI GCNNNNNNNGC 2 cut(s) 114, 119
BstUI CGCG 3 cut(s) 35, 46, 105
BstV1I GCAGC 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 255
BtuMI TCGCGA 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 2 cut(s) 7, 105
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 134, 160
CseI GACGC 1 cut(s) 52
CviAII CATG 1 cut(s) 131
CviJI RGCY 5 cut(s) 49, 83, 108, 171, 250
CviKI_1 RGCY 5 cut(s) 49, 83, 108, 171, 250
DdeI CTNAG 2 cut(s) 211, 282
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 14, 126, 296
DpnII GATC 3 cut(s) 12, 124, 294
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 134, 160
EcoO109I RGGNCCY 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 1 cut(s) 134
FaiI YATR 3 cut(s) 41, 132, 237
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 18, 47, 106
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 3 cut(s) 18, 47, 106
FspBI CTAG 1 cut(s) 319
GlaI GCGC 2 cut(s) 6, 104
GluI GCNGC 3 cut(s) 18, 47, 106
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 7, 105
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 2 cut(s) 5, 103
HinP1I GCGC 2 cut(s) 5, 103
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 34, 305
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 2 cut(s) 268, 280
HpyCH4III ACNGT 2 cut(s) 205, 301
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 119
HpyF3I CTNAG 2 cut(s) 211, 282
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 2 cut(s) 5, 103
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 12, 124, 294
LpnPI CCDG 2 cut(s) 127, 243
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 319
MaeIII GTNAC 4 cut(s) 67, 199, 225, 242
MalI GATC 3 cut(s) 14, 126, 296
MboI GATC 3 cut(s) 12, 124, 294
MboII GAAGA 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 7 cut(s) 33, 64, 101, 104, 138, 147, 151
MroNI GCCGGC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 1 cut(s) 114
MvnI CGCG 3 cut(s) 35, 46, 105
MwoI GCNNNNNNNGC 2 cut(s) 114, 119
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 12, 124, 294
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 6, 162
NmuCI GTSAC 1 cut(s) 199
NruI TCGCGA 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 19, 48, 107
PluTI GGCGCC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 6, 162
PspPI GGNCC 2 cut(s) 134, 160
PspPPI RGGWCCY 1 cut(s) 160
RruI TCGCGA 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 178
SatI GCNGC 3 cut(s) 18, 47, 106
Sau3AI GATC 3 cut(s) 12, 124, 294
Sau96I GGNCC 2 cut(s) 134, 160
SduI GDGCHC 1 cut(s) 173
SetI ASST 4 cut(s) 25, 139, 147, 252
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 134, 160
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SsiI CCGC 4 cut(s) 46, 105, 117, 215
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 205, 301
TaqI TCGA 1 cut(s) 304
TauI GCSGC 2 cut(s) 49, 108
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 134, 160
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.