Prupe.4G189100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0004468
Physical Location & Seq
Reverse (-)
11244108 .. 11247472
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G189100.1

Sequence Viewer

Length: 309 bp
ATGGCGGTATGGACAGCGGCGGCTCGGCAAGCCGCGAATATGGCTCGGATCTCCTCTCCCAAGTCGGCTTGTACAGCCCAAGCGGCTTCTCTTGTCCATCGGCGCGGTCTTGCCGGCGGTGGTGATCATCATGGACCTCTAAAGGTGAACTTTTGGGAGGACCCAATGCACCCATCTAAATGGAAGCAAGAACATTTTGTGATTGTCTCTTTAGCTGGATGGGGGACACTCCTGTACGGGGGTTACAAGTTCTTCACCAAAGACAAAAAGGACAAGAAGGACGAGAAAGTTGGAGAACCATCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.23

Weight (kDa)

9.67

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 35, 105
AciI CCGC 7 cut(s) 5, 17, 20, 33, 83, 105, 117
AclWI GGATC 1 cut(s) 56
AfaI GTAC 2 cut(s) 73, 236
AfiI CCNNNNNNNGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 134, 160
AsuHPI GGTGA 3 cut(s) 134, 157, 247
AvaII GGWCC 2 cut(s) 134, 160
BccI CCATC 4 cut(s) 105, 181, 213, 307
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 4 cut(s) 18, 21, 33, 84
BlsI GCNGC 4 cut(s) 19, 22, 34, 85
Bme18I GGWCC 2 cut(s) 134, 160
BmgT120I GGNCC 2 cut(s) 134, 160
BmiI GGNNCC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 113
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 35, 105
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 238
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 2 cut(s) 48, 124
BspACI CCGC 7 cut(s) 5, 17, 20, 33, 83, 105, 117
BspFNI CGCG 2 cut(s) 35, 105
BspLI GGNNCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 2 cut(s) 48, 124
BstAUI TGTACA 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 30, 115
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 2 cut(s) 35, 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 51, 127
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 48, 124
BstMWI GCNNNNNNNGC 4 cut(s) 29, 41, 74, 83
BstUI CGCG 2 cut(s) 35, 105
BstX2I RGATCY 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 180
BstYI RGATCY 1 cut(s) 48
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 30, 115
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 134, 160
Csp6I GTAC 2 cut(s) 72, 235
CviAII CATG 1 cut(s) 131
CviJI RGCY 7 cut(s) 23, 32, 44, 68, 77, 86, 215
CviKI_1 RGCY 7 cut(s) 23, 32, 44, 68, 77, 86, 215
CviQI GTAC 2 cut(s) 72, 235
DpnI GATC 2 cut(s) 50, 126
DpnII GATC 2 cut(s) 48, 124
Eco47I GGWCC 2 cut(s) 134, 160
EcoO109I RGGNCCY 1 cut(s) 160
FaeI CATG 1 cut(s) 134
FaiI YATR 3 cut(s) 10, 41, 132
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 18, 21, 33, 84
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 18, 21, 33, 84
FspBI CTAG 1 cut(s) 307
GlaI GCGC 1 cut(s) 104
GluI GCNGC 4 cut(s) 18, 21, 33, 84
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 134, 157, 247
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 41, 74, 83
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 48, 124
LpnPI CCDG 3 cut(s) 127, 201, 245
MaeI CTAG 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 50, 126
MboI GATC 2 cut(s) 48, 124
MboII GAAGA 1 cut(s) 244
MflI RGATCY 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 3 cut(s) 64, 147, 151
MroNI GCCGGC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 114
MvnI CGCG 2 cut(s) 35, 105
MwoI GCNNNNNNNGC 4 cut(s) 29, 41, 74, 83
NaeI GCCGGC 1 cut(s) 115
NdeII GATC 2 cut(s) 48, 124
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 162
NmeAIII GCCGAG 1 cut(s) 4
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 4 cut(s) 19, 22, 34, 85
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 134, 160
PspPPI RGGWCCY 1 cut(s) 160
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 2 cut(s) 73, 236
RsaNI GTAC 2 cut(s) 72, 235
RseI CAYNNNNRTG 1 cut(s) 178
SatI GCNGC 4 cut(s) 18, 21, 33, 84
Sau3AI GATC 2 cut(s) 48, 124
Sau96I GGNCC 2 cut(s) 134, 160
SetI ASST 3 cut(s) 139, 147, 217
SinI GGWCC 2 cut(s) 134, 160
SmiMI CAYNNNNRTG 1 cut(s) 178
SsiI CCGC 7 cut(s) 5, 17, 20, 33, 83, 105, 117
SspMI CTAG 1 cut(s) 307
TatI WGTACW 1 cut(s) 71
TauI GCSGC 4 cut(s) 20, 23, 35, 86
VpaK11BI GGWCC 2 cut(s) 134, 160
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.