Rorug05G0150600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004468
Physical Location & Seq
Reverse (-)
13951712 .. 13953169
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0150600.1

Sequence Viewer

Length: 1314 bp
ATGAGACTTCTTCATCCAATCACCCATGCTTTCTCCAAAAGCCGATCATCAGCTGATGAGCTCATGATCATGCAAATTGAAGAATACCATGGCATGAGCACTCATAATAAAGTGTTCGAAGCTTCAGAGCTTTACTTGCACAACAAGATAAGCCCTTCCACTAGACTCCTCAAAATTGTACAGACTCAGAAAGAGACTAAGTTTGCCATCCATTTCTCAAACAACCAAGAGTTTGAAGACATTTATGAAGGAGTCCAGCTGAAATGGAAATACAATTCCATATCCAAGAAGTCCAATTATCCTAGCAAAGCAGGGAAAAAGCAGCAATTCTTTGAGCTCAGATTTGATGTCAAACACAAGGAAAAGGTCATGGATGCTTACTTGCCTTATGTTGTAGAGACATTCAAGGCTATGAAAGATGCAGGAAAGATTGTCAAGCTGCATACACTTGTAAGGTCAGAGGATTACAAAGTAAGATGGAGTGCAATCAATCTCGAACACCCTGCAACATTCGAGACCATAGCCATGGATTCTGAGCAGAAGAGATCGGTTTTGGAGGATTTGGACAGGTTTGTTAAGAGGAAAGAGTTCTATCAAAGAGTAGGTAGGGCTTGGAAAAGGGGGTATCTACTTTATGGTCCTCCAGGGACTGGTAAATCATCCCTTATAGCTGCTATTGCTAATTATCTGAAGTTTGATATTTATGACTTGCAACTCACGCATTTGATATCGGATATGGAATTAAGAAGAGTGTTGCTGGCAACAACAAATAAATCCATACTCGTGATTGAGGATATAGATTGTAGTCAATTGAAGCTGCAAGATAGAAAGAACAGCAGTAAGAAAAATGACTCAGAAAGCAATCAGCTTTTGCTATTGGGACGACTACTGAACTTCACAGATGGCCTGTGGTATAGTTGTGGAGAAGAGAGAATCATTATATTCACTACCAGTCACAAGAGCAAACTAGACCCTGCATTGCTGCTTTCAGCACGAATGGACATGCACGTCCACATGTCGTATTGCTCATATGAGGGCTTCAAAACATTGGCCTCAAATTACCTAGGCATCAAGGAACACCAGCCTTTGTTTGATGAGATTGAAAGCCTACTGCAGAAGACAGAGGTCACTCCTGCAGAAGTCGCCGAAGAGCTGATGAAGAGTGAGGATGCTGATGTTGCACTCCAAGCTTTGATCACGGGGATAAAGGAAATGAATAAAAGGAAGGAAGATGAAAAAAAGGCCAAAGATGAAGAGAAAGTTAAGAACGATAAAGAGAAGGTTGATCATAAACAGTTGACATATTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

437

Amino Acids

50.8

Weight (kDa)

8.55

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 8 - 91 1.9e-15 Domain associated at C-terminal with AAA
AAA PF00004 209 - 340 2.1e-17 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 342 - 414 4.1e-26 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1007
AccB7I CCANNNNNTGG 1 cut(s) 650
AcuI CTGAAG 2 cut(s) 108, 710
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 650
AflIII ACRYGT 1 cut(s) 1014
AgsI TTSAA 6 cut(s) 80, 236, 406, 814, 1042, 1103
AjiI CACGTC 1 cut(s) 1009
AjnI CCWGG 1 cut(s) 643
Alw21I GWGCWC 3 cut(s) 63, 101, 339
Alw26I GTCTC 3 cut(s) 188, 392, 509
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 3 cut(s) 904, 1050, 1242
ApeKI GCWGC 5 cut(s) 322, 439, 671, 817, 982
Asp700I GAANNNNTTC 1 cut(s) 587
AspA2I CCTAGG 1 cut(s) 1063
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 13
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 638
AvrII CCTAGG 1 cut(s) 1063
BanII GRGCYC 2 cut(s) 63, 339
BauI CACGAG 1 cut(s) 782
BbsI GAAGAC 2 cut(s) 243, 1124
Bbv12I GWGCWC 3 cut(s) 63, 101, 339
BbvI GCAGC 5 cut(s) 334, 426, 658, 804, 969
BccI CCATC 3 cut(s) 215, 471, 896
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 645
BclI TGATCA 3 cut(s) 66, 1194, 1285
BcoDI GTCTC 3 cut(s) 188, 392, 509
BfaI CTAG 4 cut(s) 162, 303, 968, 1064
BfmI CTRYAG 2 cut(s) 1112, 1134
BisI GCNGC 5 cut(s) 323, 440, 672, 818, 983
BlnI CCTAGG 1 cut(s) 1063
BlsI GCNGC 5 cut(s) 324, 441, 673, 819, 984
Bme1390I CCNGG 1 cut(s) 645
Bme18I GGWCC 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 638
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 4 cut(s) 364, 409, 1077, 1159
BoxI GACNNNNGTC 1 cut(s) 1124
BpiI GAAGAC 2 cut(s) 243, 1124
BpmI CTGGAG 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 88, 525, 644, 1063
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 2 cut(s) 655, 951
Bse3DI GCAATG 1 cut(s) 977
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 4 cut(s) 88, 525, 644, 1063
BseGI GGATG 5 cut(s) 13, 207, 379, 659, 1174
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 1 cut(s) 977
BseMII CTCAG 4 cut(s) 200, 352, 525, 867
BseNI ACTGG 2 cut(s) 655, 951
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 5 cut(s) 334, 426, 658, 804, 969
BshFI GGCC 3 cut(s) 906, 1052, 1244
BsiHKAI GWGCWC 3 cut(s) 63, 101, 339
BslFI GGGAC 2 cut(s) 661, 894
BslI CCNNNNNNNGG 1 cut(s) 650
BsmAI GTCTC 3 cut(s) 188, 392, 509
BsmFI GGGAC 2 cut(s) 661, 894
BsnI GGCC 3 cut(s) 906, 1052, 1244
Bso31I GGTCTC 1 cut(s) 509
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 3 cut(s) 63, 101, 339
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 5 cut(s) 44, 66, 545, 1194, 1285
Bsp19I CCATGG 2 cut(s) 88, 525
BspANI GGCC 3 cut(s) 906, 1052, 1244
BspCNI CTCAG 4 cut(s) 199, 351, 526, 866
BspHI TCATGA 1 cut(s) 63
BspMAI CTGCAG 2 cut(s) 1116, 1138
BspQI GCTCTTC 1 cut(s) 1143
BspT104I TTCGAA 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 977
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 2 cut(s) 655, 951
BssECI CCNNGG 4 cut(s) 88, 525, 644, 1063
BssMI GATC 5 cut(s) 44, 66, 545, 1194, 1285
BssSI CACGAG 1 cut(s) 782
BssT1I CCWWGG 3 cut(s) 88, 525, 1063
Bst2BI CACGAG 1 cut(s) 782
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 1296
Bst6I CTCTTC 6 cut(s) 536, 742, 921, 1143, 1154, 1248
BstAUI TGTACA 1 cut(s) 178
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 759
BstDEI CTNAG 5 cut(s) 186, 198, 338, 534, 853
BstDSI CCRYGG 2 cut(s) 88, 525
BstF5I GGATG 5 cut(s) 13, 207, 379, 659, 1174
BstKTI GATC 5 cut(s) 47, 69, 548, 1197, 1288
BstMAI GTCTC 3 cut(s) 188, 392, 509
BstMBI GATC 5 cut(s) 44, 66, 545, 1194, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 136, 677, 718, 1142, 1178, 1187
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 2 cut(s) 1006, 1018
BstPAI GACNNNNGTC 1 cut(s) 1124
BstSCI CCNGG 1 cut(s) 643
BstSFI CTRYAG 2 cut(s) 1112, 1134
BstV1I GCAGC 5 cut(s) 334, 426, 658, 804, 969
BstV2I GAAGAC 2 cut(s) 243, 1124
BstXI CCANNNNNNTGG 1 cut(s) 526
BsuRI GGCC 3 cut(s) 906, 1052, 1244
BtgI CCRYGG 2 cut(s) 88, 525
BtrI CACGTC 1 cut(s) 1009
BtsCI GGATG 5 cut(s) 13, 207, 379, 659, 1174
Cac8I GCNNGC 1 cut(s) 759
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 638
Csp6I GTAC 1 cut(s) 179
CviAII CATG 9 cut(s) 26, 64, 70, 89, 94, 370, 526, 1003, 1015
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 5 cut(s) 186, 198, 338, 534, 853
DpnI GATC 5 cut(s) 46, 68, 547, 1196, 1287
DpnII GATC 5 cut(s) 44, 66, 545, 1194, 1285
DrdI GACNNNNNNGTC 1 cut(s) 1007
DseDI GACNNNNNNGTC 1 cut(s) 1007
Eam1104I CTCTTC 6 cut(s) 536, 742, 921, 1143, 1154, 1248
EarI CTCTTC 6 cut(s) 536, 742, 921, 1143, 1154, 1248
Ecl136II GAGCTC 2 cut(s) 61, 337
Eco130I CCWWGG 3 cut(s) 88, 525, 1063
Eco24I GRGCYC 2 cut(s) 63, 339
Eco31I GGTCTC 1 cut(s) 509
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 638
Eco53kI GAGCTC 2 cut(s) 61, 337
Eco57I CTGAAG 2 cut(s) 108, 710
EcoICRI GAGCTC 2 cut(s) 61, 337
EcoRII CCWGG 1 cut(s) 643
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 3 cut(s) 88, 525, 1063
EcoT38I GRGCYC 2 cut(s) 63, 339
ErhI CCWWGG 3 cut(s) 88, 525, 1063
FaeI CATG 9 cut(s) 29, 67, 73, 92, 97, 373, 529, 1006, 1018
FaqI GGGAC 2 cut(s) 661, 894
FatI CATG 9 cut(s) 25, 63, 69, 88, 93, 369, 525, 1002, 1014
FauNDI CATATG 1 cut(s) 1030
FbaI TGATCA 3 cut(s) 66, 1194, 1285
Fnu4HI GCNGC 5 cut(s) 323, 440, 672, 818, 983
FokI GGATG 4 cut(s) 194, 386, 646, 1181
FriOI GRGCYC 2 cut(s) 63, 339
Fsp4HI GCNGC 5 cut(s) 323, 440, 672, 818, 983
FspBI CTAG 4 cut(s) 162, 303, 968, 1064
GluI GCNGC 5 cut(s) 323, 440, 672, 818, 983
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 3 cut(s) 906, 1052, 1244
Hin1II CATG 9 cut(s) 29, 67, 73, 92, 97, 373, 529, 1006, 1018
HincII GTYRAC 1 cut(s) 1299
HindII GTYRAC 1 cut(s) 1299
HindIII AAGCTT 2 cut(s) 120, 1188
HinfI GANTC 6 cut(s) 165, 184, 252, 530, 851, 933
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 2 cut(s) 1012, 1299
Hpy188I TCNGA 8 cut(s) 127, 189, 341, 460, 535, 690, 733, 856
Hpy188III TCNNGA 4 cut(s) 64, 494, 514, 784
Hpy8I GTNNAC 2 cut(s) 1012, 1299
HpyAV CCTTC 4 cut(s) 165, 242, 1219, 1273
HpyCH4III ACNGT 1 cut(s) 1296
HpyCH4IV ACGT 1 cut(s) 1008
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 677, 718, 1142, 1178, 1187
HpyF3I CTNAG 5 cut(s) 186, 198, 338, 534, 853
HpySE526I ACGT 1 cut(s) 1008
Hsp92II CATG 9 cut(s) 29, 67, 73, 92, 97, 373, 529, 1006, 1018
Ksp22I TGATCA 3 cut(s) 66, 1194, 1285
Kzo9I GATC 5 cut(s) 44, 66, 545, 1194, 1285
LguI GCTCTTC 1 cut(s) 1143
Lsp1109I GCAGC 5 cut(s) 334, 426, 658, 804, 969
LweI GCATC 4 cut(s) 364, 409, 1077, 1159
MaeI CTAG 4 cut(s) 162, 303, 968, 1064
MaeII ACGT 1 cut(s) 1008
MaeIII GTNAC 2 cut(s) 953, 1126
MalI GATC 5 cut(s) 46, 68, 547, 1196, 1287
MboI GATC 5 cut(s) 44, 66, 545, 1194, 1285
MfeI CAATTG 1 cut(s) 809
MhlI GDGCHC 3 cut(s) 63, 101, 339
MluCI AATT 9 cut(s) 75, 174, 274, 295, 326, 682, 740, 809, 1057
MlyI GAGTC 4 cut(s) 159, 178, 261, 845
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 3 cut(s) 576, 743, 1263
MslI CAYNNNNRTG 3 cut(s) 68, 524, 782
MspA1I CMGCKG 2 cut(s) 53, 259
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 1 cut(s) 809
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 6 cut(s) 136, 677, 718, 1142, 1178, 1187
NcoI CCATGG 2 cut(s) 88, 525
NdeI CATATG 1 cut(s) 1030
NdeII GATC 5 cut(s) 44, 66, 545, 1194, 1285
NlaIII CATG 9 cut(s) 29, 67, 73, 92, 97, 373, 529, 1006, 1018
NmuCI GTSAC 2 cut(s) 953, 1126
NspI RCATGY 2 cut(s) 1006, 1018
NspV TTCGAA 1 cut(s) 117
PagI TCATGA 1 cut(s) 63
PciI ACATGT 1 cut(s) 1014
PciSI GCTCTTC 1 cut(s) 1143
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 2 cut(s) 530, 933
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 5 cut(s) 324, 441, 673, 819, 984
PleI GAGTC 4 cut(s) 159, 178, 260, 845
PpsI GAGTC 4 cut(s) 159, 178, 260, 845
PscI ACATGT 1 cut(s) 1014
PshAI GACNNNNGTC 1 cut(s) 1124
Psp124BI GAGCTC 2 cut(s) 63, 339
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspPI GGNCC 1 cut(s) 638
PstI CTGCAG 2 cut(s) 1116, 1138
PstNI CAGNNNCTG 1 cut(s) 650
PvuII CAGCTG 2 cut(s) 53, 259
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 3 cut(s) 68, 524, 782
SacI GAGCTC 2 cut(s) 63, 339
SapI GCTCTTC 1 cut(s) 1143
SaqAI TTAA 3 cut(s) 576, 743, 1263
SatI GCNGC 5 cut(s) 323, 440, 672, 818, 983
Sau3AI GATC 5 cut(s) 44, 66, 545, 1194, 1285
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 4 cut(s) 159, 178, 261, 845
ScrFI CCNGG 1 cut(s) 645
SduI GDGCHC 3 cut(s) 63, 101, 339
SfaNI GCATC 4 cut(s) 364, 409, 1077, 1159
SfcI CTRYAG 2 cut(s) 1112, 1134
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 638
SmiMI CAYNNNNRTG 3 cut(s) 68, 524, 782
Sse9I AATT 9 cut(s) 75, 174, 274, 295, 326, 682, 740, 809, 1057
SspMI CTAG 4 cut(s) 162, 303, 968, 1064
SstI GAGCTC 2 cut(s) 63, 339
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 3 cut(s) 88, 525, 1063
TaaI ACNGT 1 cut(s) 1296
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 3 cut(s) 117, 495, 513
TasI AATT 9 cut(s) 75, 174, 274, 295, 326, 682, 740, 809, 1057
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 2 cut(s) 530, 933
Tru1I TTAA 3 cut(s) 576, 743, 1263
Tru9I TTAA 3 cut(s) 576, 743, 1263
TseFI GTSAC 2 cut(s) 953, 1126
TseI GCWGC 5 cut(s) 322, 439, 671, 817, 982
Tsp45I GTSAC 2 cut(s) 953, 1126
TspDTI ATGAA 6 cut(s) 261, 428, 1172, 1229, 1248, 1266
Van91I CCANNNNNTGG 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 638
XceI RCATGY 2 cut(s) 1006, 1018
XmaJI CCTAGG 1 cut(s) 1063
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 4 cut(s) 162, 303, 968, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.