Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Reverse (-)

6794492 .. 6796840

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1092800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCCTCTCTAGCGGCGGCGGCAGCTCGTCAACTTGCAACTTCAAGTCGCATCTCCACCACGAGGACCTCGTCTCTGACTTCCAATCTAATCCACCGCCGTGGCCTCGCCGGCGCTGCTGATCACCATGGACCCCCAAGGGTTAATGTCTGGCAAGACCCGTTGAGCCCATCTAAATGGAAGGAAGAGCATTTCGTAATTGTATCTCTGTCTGGCTGGGGTCTACTCATCTATAGCAGTTACAAGTTTTTCTCTGGAGGCAAGAAGGAAGAGAAACTGGTGGAAGCATCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.69

Weight (kDa)

9.99

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	4 cut(s)	14, 17, 20, 97
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	45
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	3, 103
ApeKI	GCWGC	2 cut(s)	23, 116
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	66, 131
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	66, 131
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	35, 103
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	84
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
BlsI	GCNGC	5 cut(s)	16, 19, 22, 25, 118
Bme18I	GGWCC	2 cut(s)	66, 131
BmgT120I	GGNCC	2 cut(s)	66, 131
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	100, 127, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	100, 127, 137
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	282
BseXI	GCAGC	2 cut(s)	35, 103
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	2 cut(s)	5, 105
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	5, 105
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	4 cut(s)	14, 17, 20, 97
BspANI	GGCC	2 cut(s)	5, 105
BspLI	GGNNCC	1 cut(s)	133
BspQI	GCTCTTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	100, 127, 137
BssMI	GATC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	127, 137
Bst2BI	CACGAG	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	180, 264
BstC8I	GCNNGC	1 cut(s)	112
BstDSI	CCRYGG	2 cut(s)	100, 127
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 23, 111, 116
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	35, 103
BstXI	CCANNNNNNTGG	2 cut(s)	101, 177
BsuRI	GGCC	2 cut(s)	5, 105
BtgI	CCRYGG	2 cut(s)	100, 127
BtgZI	GCGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	66, 131
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	5 cut(s)	5, 26, 105, 168, 216
CviKI_1	RGCY	5 cut(s)	5, 26, 105, 168, 216
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	180, 264
EarI	CTCTTC	2 cut(s)	180, 264
Eco130I	CCWWGG	2 cut(s)	127, 137
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	66, 131
EcoO109I	RGGNCCY	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	127, 137
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	127, 137
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	129, 234
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	5, 105
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	32, 224
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	2 cut(s)	32, 224
HpyAV	CCTTC	2 cut(s)	175, 259
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 23, 111, 116
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	180
LpnPI	CCDG	6 cut(s)	124, 136, 198, 202, 240, 263
Lsp1109I	GCAGC	2 cut(s)	35, 103
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	197, 281
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	5 cut(s)	16, 57, 79, 116, 251
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	99, 175
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 23, 111, 116
NaeI	GCCGGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdiI	GCCGGC	1 cut(s)	112
PflFI	GACNNNGTC	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	16, 19, 22, 25, 118
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	66, 131
PspPPI	RGGWCCY	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	99, 175
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	66, 131
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	2 cut(s)	28, 71
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	232
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	66, 131
SmiMI	CAYNNNNRTG	2 cut(s)	99, 175
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	4 cut(s)	14, 17, 20, 97
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	2 cut(s)	127, 137
TasI	AATT	1 cut(s)	198
TauI	GCSGC	3 cut(s)	17, 20, 23
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	2 cut(s)	23, 116
Tth111I	GACNNNGTC	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	66, 131
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.