Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Forward (+)

34497935 .. 34500299

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44830.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTACTCTAGCAGCTGCCGCAGCTCGCCAAGCCGCAAGCTCACTCCGCTTGTCAACGGCCAGGTCCGCCGGTCAATCCTCCAGTATAATCCAGCGACGTGGCCTCGCCGGCGCCGCAGATCACCATGGGCCGCCCAAGGTTAACTGCTGGTCCGACCCGATGAGCCCATCTAAATGGAAGGACGAGCATTTCGTAATTGTCTCTTTGACTGGTTGGGGTGTGCTTATTTTTAGTGGATACAAGTTTTTCACCGGCGGCAAAGGCAAGAAGGACGAGAAACTGGTAGAAGCAAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.67

Weight (kDa)

10.01

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	7 cut(s)	21, 36, 49, 69, 117, 134, 258
AcoI	YGGCCR	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	114
AjiI	CACGTC	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	17, 26, 42
AluI	AGCT	3 cut(s)	17, 26, 42
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	3 cut(s)	60, 103, 131
ApeKI	GCWGC	3 cut(s)	14, 17, 23
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	66, 131, 153
AsuHPI	GGTGA	2 cut(s)	116, 244
AvaII	GGWCC	2 cut(s)	66, 153
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	4, 26, 35
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	233
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 117, 134, 259
BlsI	GCNGC	8 cut(s)	16, 19, 22, 25, 37, 118, 135, 260
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	66, 153
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	3 cut(s)	66, 131, 153
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	127, 138
Bse118I	RCCGGY	3 cut(s)	71, 110, 254
Bse1I	ACTGG	3 cut(s)	84, 217, 288
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	127, 138
BseNI	ACTGG	3 cut(s)	84, 217, 288
BseXI	GCAGC	3 cut(s)	4, 26, 35
BshFI	GGCC	3 cut(s)	62, 105, 133
BshNI	GGYRCC	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	72, 111, 255
BsmAI	GTCTC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	62, 105, 133
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	7 cut(s)	21, 36, 49, 69, 117, 134, 258
BspANI	GGCC	3 cut(s)	62, 105, 133
BspLI	GGNNCC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	113
BsrFI	RCCGGY	3 cut(s)	71, 110, 254
BsrI	ACTGG	3 cut(s)	84, 217, 288
BssAI	RCCGGY	3 cut(s)	71, 110, 254
BssECI	CCNNGG	2 cut(s)	127, 138
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	127, 138
Bst2UI	CCWGG	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	28, 40, 112
BstDSI	CCRYGG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 20, 23, 32, 48, 68, 111, 116, 264
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	4, 26, 35
BstXI	CCANNNNNNTGG	2 cut(s)	101, 177
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	62, 105, 133
BtgI	CCRYGG	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	3 cut(s)	28, 40, 112
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	3 cut(s)	71, 110, 254
Cfr13I	GGNCC	3 cut(s)	66, 131, 153
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	9 cut(s)	5, 17, 26, 35, 42, 62, 105, 133, 168
CviKI_1	RGCY	9 cut(s)	5, 17, 26, 35, 42, 62, 105, 133, 168
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	127, 138
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	66, 153
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	127, 138
EcoT38I	GRGCYC	1 cut(s)	170
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	2 cut(s)	127, 138
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	89, 129
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 117, 134, 259
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 117, 134, 259
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 117, 134, 259
GsuI	CTGGAG	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	62, 105, 133
HapII	CCGG	3 cut(s)	72, 111, 255
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	2 cut(s)	57, 145
HindII	GTYRAC	2 cut(s)	57, 145
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	3 cut(s)	72, 111, 255
HphI	GGTGA	2 cut(s)	116, 244
Hpy166II	GTNNAC	2 cut(s)	57, 145
Hpy188I	TCNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	57, 145
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	175, 265
HpyCH4IV	ACGT	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 20, 23, 32, 48, 68, 111, 116, 264
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	121
Lsp1109I	GCAGC	3 cut(s)	4, 26, 35
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	100
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	1 cut(s)	198
Mly113I	GGCGCC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	91, 116
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	175
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	3 cut(s)	72, 111, 255
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	9 cut(s)	11, 20, 23, 32, 48, 68, 111, 116, 264
NaeI	GCCGGC	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	112
PkrI	GCNGC	8 cut(s)	16, 19, 22, 25, 37, 118, 135, 260
PluTI	GGCGCC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	3 cut(s)	66, 131, 153
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 117, 134, 259
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	3 cut(s)	66, 131, 153
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	6 cut(s)	19, 28, 44, 68, 103, 144
SfoI	GGCGCC	1 cut(s)	115
SgrAI	CRCCGGYG	2 cut(s)	110, 254
SinI	GGWCC	2 cut(s)	66, 153
SmiMI	CAYNNNNRTG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	7 cut(s)	21, 36, 49, 69, 117, 134, 258
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	127, 138
TaiI	ACGT	1 cut(s)	103
TasI	AATT	1 cut(s)	198
TauI	GCSGC	5 cut(s)	23, 38, 119, 136, 261
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	3 cut(s)	14, 17, 23
VpaK11BI	GGWCC	2 cut(s)	66, 153
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.