RchiOBHm_Chr5g0035221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004468
Physical Location & Seq
Reverse (-)
29112114 .. 29113502
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31413

Sequence Viewer

Length: 360 bp
ATGGCGCCGTGGATCGCTGCAACTCGCCAACTGGCGAATATGACGCGGCTTTCCTCTCCCAAGTCCGTTACTAACGCTAAAGCCGTTTCCATCCTCCAACGGCGAGGCCTCGCCGGCGGTGCTGATCATCATGGACCTCCAAAGGTGAACTTTTGGGAGGACCCCTTGAGTCCATCTAAATGGAAAAAAGAACACTTTGTGATTGTCTCCTTAGCGGGTTGGGGGTTACTCATCTATGGGGGTTACAAGATTTTCACTGGCGACAAGGACAAGAAGGAATCTAAAAAGGAAGAGGTATTTTTTTTCCCTATTGATTATGAGTTTCGACTATCCTCATTCCTAGCTCTCAGAATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.44

Weight (kDa)

9.82

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 46
AciI CCGC 3 cut(s) 46, 117, 215
AclWI GGATC 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 199
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 20
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 134, 160
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 2 cut(s) 134, 160
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 4
BccI CCATC 2 cut(s) 98, 181
BceAI ACGGC 2 cut(s) 68, 116
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 341
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 2 cut(s) 18, 47
BlsI GCNGC 2 cut(s) 19, 48
Bme18I GGWCC 2 cut(s) 134, 160
BmgT120I GGNCC 2 cut(s) 134, 160
BmiI GGNNCC 2 cut(s) 6, 162
Bpu10I CCTNAGC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 36, 262
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 90
BseNI ACTGG 2 cut(s) 36, 262
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 12, 124
BspACI CCGC 3 cut(s) 46, 117, 215
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 360
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 6, 162
BspPI GGATC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 2 cut(s) 36, 262
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 2 cut(s) 12, 124
BssNI GRCGYC 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 211, 347
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 15, 127
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 12, 124
BstMWI GCNNNNNNNGC 2 cut(s) 114, 119
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 134, 160
CseI GACGC 1 cut(s) 52
CviAII CATG 1 cut(s) 131
CviJI RGCY 4 cut(s) 49, 83, 108, 344
CviKI_1 RGCY 4 cut(s) 49, 83, 108, 344
DdeI CTNAG 2 cut(s) 211, 347
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 14, 126
DpnII GATC 2 cut(s) 12, 124
DraIII CACNNNGTG 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 134, 160
EcoO109I RGGNCCY 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 1 cut(s) 134
FaiI YATR 4 cut(s) 41, 132, 237, 318
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 208
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 18, 47
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 18, 47
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 18, 47
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 169, 278
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 119
HpyF3I CTNAG 2 cut(s) 211, 347
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 2 cut(s) 12, 124
LpnPI CCDG 3 cut(s) 17, 127, 243
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 3 cut(s) 67, 225, 242
MalI GATC 2 cut(s) 14, 126
MboI GATC 2 cut(s) 12, 124
MboII GAAGA 1 cut(s) 302
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 8 cut(s) 64, 98, 104, 119, 147, 151, 286, 343
MreI CGCCGGCG 1 cut(s) 113
MroNI GCCGGC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 114, 119
NaeI GCCGGC 1 cut(s) 115
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 12, 124
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 6, 162
PceI AGGCCT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 19, 48
PleI GAGTC 1 cut(s) 177
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 177
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 6, 162
PspPI GGNCC 2 cut(s) 134, 160
PspPPI RGGWCCY 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 178
SatI GCNGC 2 cut(s) 18, 47
Sau3AI GATC 2 cut(s) 12, 124
Sau96I GGNCC 2 cut(s) 134, 160
SchI GAGTC 1 cut(s) 178
SetI ASST 4 cut(s) 139, 147, 297, 346
SfoI GGCGCC 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 2 cut(s) 134, 160
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 3 cut(s) 46, 117, 215
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 341
StuI AGGCCT 1 cut(s) 108
TaqI TCGA 1 cut(s) 325
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 134, 160
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.