Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Forward (+)

81363391 .. 81365709

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG583100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTACTCTGGCAGCTGCCGCAGCTCGACAAGCCGCCAATTCACTCCGTCTGTCTTCGTCCAGAACCGCCAGTCAAGCATCTACTCTAGTCCAGCGCCGCGGCCTCGCCGGCGCTGCAGATCACCATGGCCCGCCAAAGGTTAACTGCTGGTCCGACCCGATGAGCCCATCTAAATGGAAGGAGGAGCATGTCAGTCTCTCTCCCTCTGCTTCGTTTTTTATATCTTTAATCAAATTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

8.57

Weight (kDa)

10.42

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AciI	CCGC	6 cut(s)	21, 36, 69, 100, 102, 134
AfiI	CCNNNNNNNGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	17, 26
AluI	AGCT	2 cut(s)	17, 26
Alw26I	GTCTC	1 cut(s)	203
AoxI	GGCC	2 cut(s)	103, 130
ApeKI	GCWGC	4 cut(s)	14, 17, 23, 116
AspLEI	GCGC	2 cut(s)	99, 116
AspS9I	GGNCC	2 cut(s)	131, 153
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	4, 26, 35, 103
BccI	CCATC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	2 cut(s)	100, 117
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 100, 103, 117
BlsI	GCNGC	8 cut(s)	16, 19, 22, 25, 37, 101, 104, 118
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	131, 153
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	100, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	100, 127
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	4, 26, 35, 103
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	105, 132
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	105, 132
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	121
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	6 cut(s)	21, 36, 69, 100, 102, 134
BspANI	GGCC	2 cut(s)	105, 132
BspFNI	CGCG	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	100, 127
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	112, 134
BstDSI	CCRYGG	2 cut(s)	100, 127
BstFNI	CGCG	1 cut(s)	102
BstH2I	RGCGCY	2 cut(s)	100, 117
BstHHI	GCGC	2 cut(s)	99, 116
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 20, 23, 32, 77, 111, 116
BstNSI	RCATGY	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	4 cut(s)	4, 26, 35, 103
BstV2I	GAAGAC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	105, 132
BtgI	CCRYGG	2 cut(s)	100, 127
Cac8I	GCNNGC	2 cut(s)	112, 134
CfoI	GCGC	2 cut(s)	99, 116
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	131, 153
Cfr42I	CCGCGG	1 cut(s)	103
CviAII	CATG	2 cut(s)	128, 191
CviJI	RGCY	7 cut(s)	5, 17, 26, 35, 105, 132, 168
CviKI_1	RGCY	7 cut(s)	5, 17, 26, 35, 105, 132, 168
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	131, 194
FaiI	YATR	3 cut(s)	129, 192, 224
FatI	CATG	2 cut(s)	127, 190
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 100, 103, 117
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 100, 103, 117
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	98, 115
GluI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 100, 103, 117
HaeII	RGCGCY	2 cut(s)	100, 117
HaeIII	GGCC	2 cut(s)	105, 132
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	99, 116
Hin1II	CATG	2 cut(s)	131, 194
Hin6I	GCGC	2 cut(s)	97, 114
HinP1I	GCGC	2 cut(s)	97, 114
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 20, 23, 32, 77, 111, 116
Hsp92II	CATG	2 cut(s)	131, 194
HspAI	GCGC	2 cut(s)	97, 114
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	145
KspI	CCGCGG	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	5 cut(s)	76, 85, 107, 124, 136
Lsp1109I	GCAGC	4 cut(s)	4, 26, 35, 103
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	89
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	2 cut(s)	40, 236
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	3 cut(s)	116, 178, 217
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	2 cut(s)	144, 230
MslI	CAYNNNNRTG	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	17, 102
MspI	CCGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	7 cut(s)	11, 20, 23, 32, 77, 111, 116
NaeI	GCCGGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	131, 194
NspI	RCATGY	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	112
PkrI	GCNGC	8 cut(s)	16, 19, 22, 25, 37, 101, 104, 118
PspPI	GGNCC	2 cut(s)	131, 153
PstI	CTGCAG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	175
SacII	CCGCGG	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	144, 230
SatI	GCNGC	8 cut(s)	15, 18, 21, 24, 36, 100, 103, 117
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	131, 153
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	3 cut(s)	19, 28, 144
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	117
Sfr303I	CCGCGG	1 cut(s)	103
SgrAI	CRCCGGYG	1 cut(s)	110
SgrBI	CCGCGG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	175
Sse9I	AATT	2 cut(s)	40, 236
SsiI	CCGC	6 cut(s)	21, 36, 69, 100, 102, 134
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	127
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	40, 236
TauI	GCSGC	4 cut(s)	23, 38, 102, 105
Tru1I	TTAA	2 cut(s)	144, 230
Tru9I	TTAA	2 cut(s)	144, 230
TseI	GCWGC	4 cut(s)	14, 17, 23, 116
TspGWI	ACGGA	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.