Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Reverse (-)

29723546 .. 29725905

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGCCGTGGATCGCTGCAACTCGCCAACTCGCGAATATGGCGCGGCTTTCCTCTCCCAAGTCCGTTAATAACGCTAAAGCCGTTTCCCTCCTCCAACGGCGAGGCCACGCCGGCGGTGCTGATTATCATGGACCTCCAAAGATGAACTTTTGGGAGGACCCCTTGAATCCATCTAAATGGAAAAAAGAACATTTTGTGACCGTCTCCTTAGTGGGATGGGGGTTACTCATCTATGGGGGTTACAAGCTTTTCACTGGCGACAAGGTCAAGAAGGAATCTAAAAAGGAAGAGATCACAGTTCGAGAAGTGCCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.92

Weight (kDa)

10.05

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	2 cut(s)	35, 46
AciI	CCGC	2 cut(s)	46, 117
AclWI	GGATC	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	7, 46
AspS9I	GGNCC	2 cut(s)	134, 160
AvaII	GGWCC	2 cut(s)	134, 160
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	181, 213
BceAI	ACGGC	2 cut(s)	68, 116
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	18, 47
BlsI	GCNGC	2 cut(s)	19, 48
Bme18I	GGWCC	2 cut(s)	134, 160
BmgT120I	GGNCC	2 cut(s)	134, 160
BmiI	GGNNCC	2 cut(s)	6, 162
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	2 cut(s)	35, 46
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	12, 294
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	2 cut(s)	46, 117
BspANI	GGCC	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	35, 46
BspLI	GGNNCC	2 cut(s)	6, 162
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	12, 294
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	205, 301
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	35, 46
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 46
BstKTI	GATC	2 cut(s)	15, 297
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	12, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 114, 119
BstUI	CGCG	2 cut(s)	35, 46
BstV1I	GCAGC	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	255
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	2 cut(s)	7, 46
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	134, 160
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	4 cut(s)	49, 83, 108, 250
CviKI_1	RGCY	4 cut(s)	49, 83, 108, 250
DdeI	CTNAG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	14, 296
DpnII	GATC	2 cut(s)	12, 294
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	134, 160
EcoO109I	RGGNCCY	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	134
FaiI	YATR	3 cut(s)	41, 132, 237
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	18, 47
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	18, 47
FspBI	CTAG	1 cut(s)	319
GlaI	GCGC	2 cut(s)	6, 45
GluI	GCNGC	2 cut(s)	18, 47
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	2 cut(s)	7, 46
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	2 cut(s)	5, 44
HinP1I	GCGC	2 cut(s)	5, 44
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	169, 278
HpaII	CCGG	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	34, 271, 305
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	205, 301
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 114, 119
HpyF3I	CTNAG	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	2 cut(s)	5, 44
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	12, 294
LpnPI	CCDG	2 cut(s)	127, 243
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	319
MaeIII	GTNAC	3 cut(s)	199, 225, 242
MalI	GATC	2 cut(s)	14, 296
MboI	GATC	2 cut(s)	12, 294
MboII	GAAGA	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	6 cut(s)	64, 98, 101, 104, 147, 151
MreI	CGCCGGCG	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	178
MspI	CCGG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	35, 46
MwoI	GCNNNNNNNGC	3 cut(s)	41, 114, 119
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	12, 294
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	6, 162
NmuCI	GTSAC	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	169, 278
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	19, 48
PluTI	GGCGCC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	6, 162
PspPI	GGNCC	2 cut(s)	134, 160
PspPPI	RGGWCCY	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	266
RruI	TCGCGA	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	18, 47
Sau3AI	GATC	2 cut(s)	12, 294
Sau96I	GGNCC	2 cut(s)	134, 160
SetI	ASST	3 cut(s)	139, 252, 270
SfoI	GGCGCC	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	134, 160
SmiMI	CAYNNNNRTG	1 cut(s)	178
SsiI	CCGC	2 cut(s)	46, 117
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	205, 301
TaqI	TCGA	1 cut(s)	304
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	169, 278
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	134, 160
XspI	CTAG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.