Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Forward (+)

22900273 .. 22902533

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G232400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTACTTTAGCGGCGGCTGCAGCTCGTCAATTCGCAACTTCGAGTCGAATCTCTTCGGCTAGAACCTCGTCTCAAGCATCGAATCTAATCCAAAGGCGTGGCCTTGCCGGCGCTGCTGATCATCATGGACCCCCAAGGGTTAACGTCTGGCAAGACCCATTGAGCCCATCCAAATGGAAGGAAGAGCATTTTGTAATTGTCTCCTTATCTGGCTGGGGTCTACTCATCTTTGGGGCTTACAAGTTCTTCACTGGAGGCAAGGGCAAAAAGGAAGAGAAACTGGCGGAAGCATCGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.78

Weight (kDa)

10.2

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	3 cut(s)	14, 17, 287
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	78, 208
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	20, 23, 116
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	7, 35, 103
BccI	CCATC	1 cut(s)	178
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	78, 208
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
BlsI	GCNGC	5 cut(s)	16, 19, 22, 25, 118
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	259, 288
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	170
BseNI	ACTGG	2 cut(s)	259, 288
BseXI	GCAGC	3 cut(s)	7, 35, 103
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	78, 208
BsmBI	CGTCTC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	3 cut(s)	14, 17, 287
BspANI	GGCC	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	259, 288
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	137
Bst6I	CTCTTC	3 cut(s)	61, 180, 270
BstC8I	GCNNGC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	78, 208
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 23, 111, 116
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	7, 35, 103
BstXI	CCANNNNNNTGG	2 cut(s)	101, 177
BsuRI	GGCC	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	252, 298
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	8 cut(s)	5, 20, 26, 62, 105, 168, 216, 239
CviKI_1	RGCY	8 cut(s)	5, 20, 26, 62, 105, 168, 216, 239
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	3 cut(s)	61, 180, 270
EarI	CTCTTC	3 cut(s)	61, 180, 270
EciI	GGCGGA	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	1 cut(s)	131
FaiI	YATR	1 cut(s)	129
FatI	CATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	46, 51, 85
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	145, 224
Hpy8I	GTNNAC	2 cut(s)	145, 224
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 23, 111, 116
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	180
LpnPI	CCDG	6 cut(s)	124, 136, 198, 202, 240, 269
Lsp1109I	GCAGC	3 cut(s)	7, 35, 103
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	48, 197, 241, 287
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	2 cut(s)	32, 198
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	79, 251
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	175
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 23, 111, 116
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	51, 85
PkrI	GCNGC	5 cut(s)	16, 19, 22, 25, 118
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	5 cut(s)	15, 18, 21, 24, 117
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	3 cut(s)	28, 71, 150
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	32, 198
SsiI	CCGC	3 cut(s)	14, 17, 287
SspMI	CTAG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	137
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	44, 49, 83
TasI	AATT	2 cut(s)	32, 198
TauI	GCSGC	2 cut(s)	17, 20
TfiI	GAWTC	2 cut(s)	51, 85
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	3 cut(s)	20, 23, 116
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.