pycom09g01800

cystathionine gamma-lyase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017349
Physical Location & Seq
Forward (+)
1379257 .. 1382001
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01800.1

Sequence Viewer

Length: 1413 bp
ATGGGAATGGGATCTTATAACATTCACAGCAAGGGGAATGGAAGTGGTGGCAGCGGCAGCGGCGGCAACAGAGGGAATGGAAAGTCATATGGATTGATGTTGGTGTTGGCATTCGGGGCAGCGCTGCTCGGAGTGTTGCTTCTCCACAAGCTCAAGGAGCGGCGCATCTTCAACCTCCTCCTCAAAGAGAAGGACTCCGACCTTCTTTCCCTTCAACACCTCCTCCAGAAGGAGAGAGACTACACCAAAGAATTGAGAAGGAAGAACGAAGAGATTAAAGCAAAGCTATACCCAATTAGAACCCAGAAGATGGAGCTTGATAGGAGAATCTCGGAGCTGAAATCCACCATTGGTTCGCTTAAAGAGGAACTACAAACCGTGGAGGCTGTGCTTGAGGAGAAGCAAAGTGAAATCAAGGTGCTGAGACTGAGACTGAATGCCAATAATGGAAATCCACCAGCCATGGAATTGGTAGAAAGCTTGAAGCGCAAGGAAGCTGAAATTGAGGATTTGAAACACCAGGTTGAAGATCCGGTTAAGGTCAGATCGTTGAGCACCGATGATCCATCAAATTCACTTGTAAATTTAACAATGTATGACAGTGTGTCAGGAAAAGATAAAACAGAGGTCACTGAGAAAAAAGAAGAGGGTGATCGATTGCAGGAATCCCCCGGAAACAAGGACATTGCGGAAACAATTTCAGGTGCGCATGGAAATGGGAATAAGTCCATTGGACAAGAAGATCAAATTGGAAATGGAGAGAAAGAAACTGATAGGAGGGAAACGAATAGTGGCACAGAAGAAGTTGAGAAGATTACCAACACAACCGGAAAAGATGGTGGTTTTGTCACTGGTGCCAAGGAAACTAATATTGCAAGTGAGGCTGAGACAATTACCAACACAACCGGGAAAGATGTTGATCATGAAGTAAATGATGGTGAAGAAAATAAGATCACAAGAAACGGGCATGTTGGACATATTGAAAACTCTGAACTAGGCGAGAAGCAGAAACTTTATGCGGCTCCTAAAGGTGGCGACAGACGGAAGAAAGGGAGATTAGTGGCTAGAAACAGGAGACTGGAGAATAGGGGAAATCTTGAGAACGAAGGAGTGGGAAGGGTGAGAAGCAGAAGATTCTTCAAAGATGATCAGGTTGGGTTAATGGGAAGAGAAGATGAAGCAGGTTCAAACGGGAGACTAATAGGGGATCACCTCATTAATTCGTCAGATGTCAAAGGTTTGGAGCTTCAAAACTCTGAAAACACCGAAGAGCTGAAGAACAAACTTGCCCACGTCAACACAAGCAAAGCAAATGGTAAATTCGACAGTGTAACACATAATGTAGAAAACAGAAAGTTGAAGTTGGAGAGTTGGAAGAGCACGAAGCCAGAAACATCCAACAACAGAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

52.16

Weight (kDa)

7.22

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017349)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44840
prunus_persica Prupe.3G232500_v2.0.a1
pyrus_communis pycom09g01800
rosa_chinensis RchiOBHm_Chr2g0162021
rosa_laevigata RLG00000021315
rosa_multiflora Rmu_co8492063.1_g000001
rosa_roxburghii Rroxscaffold_2G00088390
rosa_rugosa Rorug02G0494000
rosa_samantha Rh2AG560000 Rh2BG573400 Rh2CG543600 Rh2DG583200
rosa_wichuraiana Rw2G046350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
Acc16I TGCGCA 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 1172
AccB1I GGYRCC 1 cut(s) 854
AccB7I CCANNNNNTGG 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 160
AciI CCGC 6 cut(s) 54, 60, 63, 160, 689, 1019
AclWI GGATC 4 cut(s) 19, 524, 557, 1215
AcsI RAATTY 3 cut(s) 571, 583, 1319
AcuI CTGAAG 1 cut(s) 1295
AfeI AGCGCT 1 cut(s) 123
AfiI CCNNNNNNNGG 3 cut(s) 229, 310, 1031
AhdI GACNNNNNGTC 1 cut(s) 604
AjiI CACGTC 1 cut(s) 1294
AjnI CCWGG 1 cut(s) 519
AjuI GAANNNNNNNTTGG 2 cut(s) 732, 764
AluBI AGCT 8 cut(s) 151, 286, 316, 337, 480, 497, 1246, 1273
AluI AGCT 8 cut(s) 151, 286, 316, 337, 480, 497, 1246, 1273
Alw21I GWGCWC 2 cut(s) 557, 1382
Alw26I GTCTC 6 cut(s) 231, 418, 424, 881, 1069, 1189
AlwI GGATC 4 cut(s) 19, 524, 557, 1215
AlwNI CAGNNNCTG 1 cut(s) 1410
Aor51HI AGCGCT 1 cut(s) 123
ApeKI GCWGC 4 cut(s) 51, 57, 119, 124
ApoI RAATTY 3 cut(s) 571, 583, 1319
AseI ATTAAT 1 cut(s) 1218
AspLEI GCGC 4 cut(s) 124, 165, 489, 709
AsuC2I CCSGG 2 cut(s) 672, 907
AsuHPI GGTGA 4 cut(s) 662, 950, 1132, 1202
BanI GGYRCC 1 cut(s) 854
Bbv12I GWGCWC 2 cut(s) 557, 1382
BbvI GCAGC 4 cut(s) 63, 69, 111, 131
BccI CCATC 4 cut(s) 304, 574, 830, 929
BciT130I CCWGG 1 cut(s) 521
BclI TGATCA 2 cut(s) 919, 1147
BcnI CCSGG 2 cut(s) 672, 907
BcoDI GTCTC 6 cut(s) 231, 418, 424, 881, 1069, 1189
BfaI CTAG 2 cut(s) 995, 1065
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 1172
BisI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 120, 125, 161, 1020
BlsI GCNGC 9 cut(s) 53, 56, 59, 62, 65, 121, 126, 162, 1021
Bme1390I CCNGG 3 cut(s) 521, 672, 907
BmeRI GACNNNNNGTC 1 cut(s) 604
BmgBI CACGTC 1 cut(s) 1294
BmiI GGNNCC 2 cut(s) 856, 1023
BmrFI CCNGG 3 cut(s) 521, 672, 907
BmsI GCATC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpmI CTGGAG 2 cut(s) 209, 1100
BpuEI CTTGAG 3 cut(s) 137, 413, 1118
BpuMI CCSGG 2 cut(s) 672, 907
Bsa29I ATCGAT 1 cut(s) 655
BsaBI GATNNNNATC 1 cut(s) 918
BsaJI CCNNGG 4 cut(s) 378, 462, 670, 858
BsaWI WCCGGW 2 cut(s) 532, 827
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 310, 1031
Bse1I ACTGG 2 cut(s) 856, 1083
Bse3DI GCAATG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 1 cut(s) 521
BseCI ATCGAT 1 cut(s) 655
BseDI CCNNGG 4 cut(s) 378, 462, 670, 858
BseGI GGATG 1 cut(s) 1394
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 3 cut(s) 229, 310, 1031
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 4 cut(s) 413, 419, 624, 876
BseNI ACTGG 2 cut(s) 856, 1083
BseRI GAGGAG 4 cut(s) 167, 170, 212, 410
BseXI GCAGC 4 cut(s) 63, 69, 111, 131
BshNI GGYRCC 1 cut(s) 854
BshVI ATCGAT 1 cut(s) 655
BsiHKAI GWGCWC 2 cut(s) 557, 1382
BsiSI CCGG 4 cut(s) 533, 672, 828, 906
BslI CCNNNNNNNGG 3 cut(s) 229, 310, 1031
BsmAI GTCTC 6 cut(s) 231, 418, 424, 881, 1069, 1189
BsmI GAATGC 2 cut(s) 110, 442
Bsp1286I GDGCHC 2 cut(s) 557, 1382
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 6 cut(s) 54, 60, 63, 160, 689, 1019
BspCNI CTCAG 4 cut(s) 414, 420, 625, 877
BspDI ATCGAT 1 cut(s) 655
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 2 cut(s) 856, 1023
BspMI ACCTGC 1 cut(s) 1172
BspPI GGATC 4 cut(s) 19, 524, 557, 1215
BspQI GCTCTTC 2 cut(s) 1263, 1370
BspT107I GGYRCC 1 cut(s) 854
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 684
BsrI ACTGG 2 cut(s) 856, 1083
BssECI CCNNGG 4 cut(s) 378, 462, 670, 858
BssT1I CCWWGG 2 cut(s) 462, 858
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 3 cut(s) 379, 602, 1328
Bst6I CTCTTC 5 cut(s) 264, 639, 1162, 1263, 1370
BstDEI CTNAG 4 cut(s) 422, 428, 633, 885
BstDSI CCRYGG 2 cut(s) 378, 462
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 1394
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 4 cut(s) 124, 165, 489, 709
BstMAI GTCTC 6 cut(s) 231, 418, 424, 881, 1069, 1189
BstMWI GCNNNNNNNGC 7 cut(s) 57, 60, 63, 116, 157, 486, 881
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 971
BstSCI CCNGG 3 cut(s) 519, 670, 905
BstV1I GCAGC 4 cut(s) 63, 69, 111, 131
BstX2I RGATCY 2 cut(s) 11, 529
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 2 cut(s) 11, 529
Bsu15I ATCGAT 1 cut(s) 655
BsuTUI ATCGAT 1 cut(s) 655
BtgI CCRYGG 2 cut(s) 378, 462
BtrI CACGTC 1 cut(s) 1294
BtsCI GGATG 1 cut(s) 1394
BtsIMutI CAGTG 4 cut(s) 607, 630, 849, 1333
BveI ACCTGC 1 cut(s) 1172
CaiI CAGNNNCTG 1 cut(s) 1410
CciI TCATGA 1 cut(s) 922
CfoI GCGC 4 cut(s) 124, 165, 489, 709
ClaI ATCGAT 1 cut(s) 655
CsiI ACCWGGT 1 cut(s) 519
CviAII CATG 4 cut(s) 463, 710, 923, 968
DdeI CTNAG 4 cut(s) 422, 428, 633, 885
DriI GACNNNNNGTC 1 cut(s) 604
Eam1104I CTCTTC 5 cut(s) 264, 639, 1162, 1263, 1370
Eam1105I GACNNNNNGTC 1 cut(s) 604
EarI CTCTTC 5 cut(s) 264, 639, 1162, 1263, 1370
Eco130I CCWWGG 2 cut(s) 462, 858
Eco47III AGCGCT 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 1295
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 519
EcoT14I CCWWGG 2 cut(s) 462, 858
ErhI CCWWGG 2 cut(s) 462, 858
FaeI CATG 4 cut(s) 466, 713, 926, 971
FatI CATG 4 cut(s) 462, 709, 922, 967
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 2 cut(s) 919, 1147
Fnu4HI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 120, 125, 161, 1020
FokI GGATG 1 cut(s) 1381
Fsp4HI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 120, 125, 161, 1020
FspAI RTGCGCAY 1 cut(s) 708
FspBI CTAG 2 cut(s) 995, 1065
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 4 cut(s) 123, 164, 488, 708
GluI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 120, 125, 161, 1020
GsuI CTGGAG 2 cut(s) 209, 1100
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 4 cut(s) 533, 672, 828, 906
HhaI GCGC 4 cut(s) 124, 165, 489, 709
Hin1II CATG 4 cut(s) 466, 713, 926, 971
Hin6I GCGC 4 cut(s) 122, 163, 487, 707
HinP1I GCGC 4 cut(s) 122, 163, 487, 707
HincII GTYRAC 1 cut(s) 1297
HindII GTYRAC 1 cut(s) 1297
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 4 cut(s) 194, 327, 665, 1134
HpaII CCGG 4 cut(s) 533, 672, 828, 906
HphI GGTGA 4 cut(s) 662, 950, 1132, 1202
Hpy166II GTNNAC 1 cut(s) 1297
Hpy188I TCNGA 7 cut(s) 131, 199, 334, 545, 991, 1228, 1258
Hpy188III TCNNGA 4 cut(s) 226, 609, 923, 1097
Hpy8I GTNNAC 1 cut(s) 1297
HpyAV CCTTC 7 cut(s) 184, 212, 221, 223, 252, 1100, 1110
HpyCH4III ACNGT 3 cut(s) 379, 602, 1328
HpyCH4IV ACGT 1 cut(s) 1293
HpyCH4V TGCA 2 cut(s) 661, 875
HpyF10VI GCNNNNNNNGC 7 cut(s) 57, 60, 63, 116, 157, 486, 881
HpyF3I CTNAG 4 cut(s) 422, 428, 633, 885
HpySE526I ACGT 1 cut(s) 1293
Hsp92II CATG 4 cut(s) 466, 713, 926, 971
HspAI GCGC 4 cut(s) 122, 163, 487, 707
Ksp22I TGATCA 2 cut(s) 919, 1147
LguI GCTCTTC 2 cut(s) 1263, 1370
LmnI GCTCC 5 cut(s) 157, 313, 334, 1027, 1243
Lsp1109I GCAGC 4 cut(s) 63, 69, 111, 131
LweI GCATC 1 cut(s) 174
MabI ACCWGGT 1 cut(s) 519
MaeI CTAG 2 cut(s) 995, 1065
MaeII ACGT 1 cut(s) 1293
MaeIII GTNAC 3 cut(s) 628, 847, 1330
MbiI CCGCTC 1 cut(s) 160
MflI RGATCY 2 cut(s) 11, 529
MhlI GDGCHC 2 cut(s) 557, 1382
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 4 cut(s) 222, 952, 1344, 1352
MseI TTAA 6 cut(s) 276, 360, 537, 587, 1160, 1218
MslI CAYNNNNRTG 1 cut(s) 714
MspA1I CMGCKG 2 cut(s) 54, 60
MspI CCGG 4 cut(s) 533, 672, 828, 906
MspR9I CCNGG 3 cut(s) 521, 672, 907
Mva1269I GAATGC 2 cut(s) 110, 442
MvaI CCWGG 1 cut(s) 521
MwoI GCNNNNNNNGC 7 cut(s) 57, 60, 63, 116, 157, 486, 881
NciI CCSGG 2 cut(s) 672, 907
NcoI CCATGG 1 cut(s) 462
NdeI CATATG 1 cut(s) 88
NlaIII CATG 4 cut(s) 466, 713, 926, 971
NlaIV GGNNCC 2 cut(s) 856, 1023
NmuCI GTSAC 2 cut(s) 628, 847
NsbI TGCGCA 1 cut(s) 708
NspI RCATGY 1 cut(s) 971
PagI TCATGA 1 cut(s) 922
PciSI GCTCTTC 2 cut(s) 1263, 1370
PctI GAATGC 2 cut(s) 110, 442
PfeI GAWTC 3 cut(s) 327, 665, 1134
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 9 cut(s) 53, 56, 59, 62, 65, 121, 126, 162, 1021
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 1218
PsiI TTATAA 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 2 cut(s) 856, 1023
PstNI CAGNNNCTG 1 cut(s) 1410
PsuI RGATCY 2 cut(s) 11, 529
RseI CAYNNNNRTG 1 cut(s) 714
SapI GCTCTTC 2 cut(s) 1263, 1370
SaqAI TTAA 6 cut(s) 276, 360, 537, 587, 1160, 1218
SatI GCNGC 9 cut(s) 52, 55, 58, 61, 64, 120, 125, 161, 1020
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 521, 672, 907
SduI GDGCHC 2 cut(s) 557, 1382
SexAI ACCWGGT 1 cut(s) 519
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 3 cut(s) 152, 392, 1097
SmoI CTYRAG 3 cut(s) 152, 392, 1097
SsiI CCGC 6 cut(s) 54, 60, 63, 160, 689, 1019
SspI AATATT 1 cut(s) 871
SspMI CTAG 2 cut(s) 995, 1065
StyD4I CCNGG 3 cut(s) 519, 670, 905
StyI CCWWGG 2 cut(s) 462, 858
TaaI ACNGT 3 cut(s) 379, 602, 1328
TaiI ACGT 1 cut(s) 1296
TaqI TCGA 2 cut(s) 655, 1323
TauI GCSGC 5 cut(s) 57, 63, 66, 163, 1022
TfiI GAWTC 3 cut(s) 327, 665, 1134
Tru1I TTAA 6 cut(s) 276, 360, 537, 587, 1160, 1218
Tru9I TTAA 6 cut(s) 276, 360, 537, 587, 1160, 1218
TscAI CASTG 4 cut(s) 607, 637, 856, 1333
TseFI GTSAC 2 cut(s) 628, 847
TseI GCWGC 4 cut(s) 51, 57, 119, 124
Tsp45I GTSAC 2 cut(s) 628, 847
TspDTI ATGAA 2 cut(s) 939, 1191
TspGWI ACGGA 1 cut(s) 1057
TspRI CASTG 4 cut(s) 607, 637, 856, 1333
Van91I CCANNNNNTGG 1 cut(s) 310
VspI ATTAAT 1 cut(s) 1218
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 3 cut(s) 571, 583, 1319
XceI RCATGY 1 cut(s) 971
XspI CTAG 2 cut(s) 995, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.