Prupe.3G280100_v2.0.a1

Xyloglucan glycosyltransferase 4-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
25596040 .. 25599234
3195 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G280100.1

Sequence Viewer

Length: 1995 bp
ATGGCTCCAAACTCAGTCGTAGTTACAATCGAGAAGCCTGACAGCTCTGCACTAAAGGTTAATGGCTTGGATTCATCTGTGTTTCTTGAGAAACAAAAGGCAGTGAGCACCAAGCAATTCACATGGGTTCTTCTTCTCAAAGTTAATAGAATATTTGCTTGCCTTTCATGGCTGCCAATGGCATTCAGGGCCATGTTTGTTTCACTTAAAAAACGCATTGCCTTATCTGACAAGAGTGATGAAGAGCCCAAAAGCAGAGGAAGGTTGTATAGATTCATCAAAGCTTTTCTTGGTTTGTCAATTGTAGCTCTGGTCATTGAAGTCATTGCCCATTTCAAAAATTGGAATTTGAATCTGATTCAGCCTTGGGAGGTTCAGGGTTTGTTGCAGTGGTCCTATATGACCTGGTCGGCGTTCAGGGTTGACTATATTGCTCCTGTGGCTATAATTCTCTCTAAATTCTGCATTGTACTTTTTCTGATTCAATCTCTTGATCGACTGGTTCTGTGTATTGGATGTTTCTGGATCAAATACAAGAAGATAAAGCCCACAGTAGCAGCAGATGCATATGACATTGAAGATTCTTCTACTTTCCCAATGGTCCTTCTACAGATCCCCATGTGCAATGAGAGAGAGGTGTACGAGCAAGCAATTGAATCTGCTTGTCAGATGGATTGGCCAAGAGACAGACTTTTAATTCAAGTTTTAGATGACTCGGATGATAGGAATTTGCAGCTTTTAATCAAAGACGAAGTCTCAACATGGAACCAGAAAGGTGTCAACATAATCTACAGACATCGGTTGATCAGAACTGGTTACAAAGCAGGCAACCTTAAATCAGCCATGGGTTGTGAGTATGTCAAAGACTATGAGTTTGTGGCAATATTTGATGCTGATTTCCAGCCCAACCCTGATTTCCTTAAGCTGACCATTCCTCATTTCAAGGGAAATCCTGAATTGGGACTTGTCCAGGCTCGCTGGTCCTTTGTGAACAAGGATGAGAACTTACTTACAAGGCTCCAAAACATCAACTTGTGCTTCCATTTTGAAGTGGAACAGCAAGTCAATGGTGTCTTCCTCAATTTCTTCGGATTTAATGGAACTGCAGGAGTTTGGAGAATTAAGGCTTTGGAAGAATCAGGAGGCTGGCTAGAGAGAACAACAGTTGAGGATATGGACATTGCCGTTCGAGCACACTTAAATGGATGGAAATTTATCTTCCTTAATGATGTCAGAGTCCTTTGTGAATTACCAGAGTCTTATGAAACTTACAAGAAGCAACAGCACCGCTGGCATTCGGGTCCTATGCAGCTCTTCAGATTGTGTCTTCCTGCTATCTTAACTTCCAAGATATCAATGTGGAAGAAGAGCAACTTGATATTTCTTTTCTTTCTTTTGAGGAAGCTGATTCTTCCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTGACCATGTTCTTGCCTGAGGCTGAACTGCCTCTTTGGGTAATTTGTTATATCCCCATTTTCATGTCCTTTCTAAACATTCTTCCATCCCCAAAATCTTTCCCTTTCTTGGTTCCATACCTACTGTTCGAGAACACAATGTCTGTCACAAAGTTCAATGCCATGGTTTCTGGGCTATTTCAGCTGGGAAGTTCTTATGAGTGGGTGGTGACAAAGAAGACTGGAAGATCATCTGAATCAGATTTGTTAGCCCTTGCTGAGAGGGAATCACTGTCTTCAAATGAAGAGAAGATCCTAAGGAGGAACTCTGAGTCTGGTTTGGAATTGTTAAGTAAACTCAAGGAACAAGAAGTAGCCCCCATCCCCAAGAAGAAGAAGAAAAATGGGATCTACAGGAAAGAGCTTGCGCTTGCTTTTCTGCTACTCACTGCATCGGCCAGAAGCTTCTTATCAGCACACGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGGCTGTCATTTCTTGCTGTAGGGTTGGACTTAATAGGTGAGCAGATGGGCTAA

Protein Analysis

665

Amino Acids

76.47

Weight (kDa)

8.84

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1288
AclWI GGATC 4 cut(s) 533, 607, 1738, 1847
AcoI YGGCCR 2 cut(s) 677, 1887
AcsI RAATTY 4 cut(s) 346, 458, 727, 1211
AcuI CTGAAG 1 cut(s) 1300
AfaI GTAC 2 cut(s) 471, 641
AfiI CCNNNNNNNGG 2 cut(s) 959, 1561
AflII CTTAAG 1 cut(s) 920
AjnI CCWGG 2 cut(s) 404, 969
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
Alw21I GWGCWC 2 cut(s) 110, 1195
Alw26I GTCTC 2 cut(s) 678, 760
AlwI GGATC 4 cut(s) 533, 607, 1738, 1847
AoxI GGCC 3 cut(s) 189, 677, 1887
ApeKI GCWGC 4 cut(s) 172, 557, 733, 1309
ApoI RAATTY 4 cut(s) 346, 458, 727, 1211
ArsI GACNNNNNNTTYG 4 cut(s) 738, 770, 857, 889
AspLEI GCGC 1 cut(s) 1861
AspS9I GGNCC 5 cut(s) 189, 393, 601, 981, 1301
AsuHPI GGTGA 2 cut(s) 1672, 1991
AvaII GGWCC 4 cut(s) 393, 601, 981, 1301
AxyI CCTNAGG 2 cut(s) 1470, 1748
BalI TGGCCA 1 cut(s) 679
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 4 cut(s) 1066, 1319, 1676, 1719
Bbv12I GWGCWC 2 cut(s) 110, 1195
BbvI GCAGC 4 cut(s) 159, 569, 745, 1321
BccI CCATC 5 cut(s) 664, 1200, 1546, 1820, 1981
BceAI ACGGC 1 cut(s) 1169
BciT130I CCWGG 2 cut(s) 406, 971
BclI TGATCA 1 cut(s) 804
BcoDI GTCTC 2 cut(s) 678, 760
BfaI CTAG 1 cut(s) 1151
BfmI CTRYAG 5 cut(s) 608, 790, 1104, 1843, 1959
BfrI CTTAAG 1 cut(s) 920
BisI GCNGC 4 cut(s) 173, 558, 734, 1310
BlsI GCNGC 4 cut(s) 174, 559, 735, 1311
Bme1390I CCNGG 2 cut(s) 406, 971
Bme18I GGWCC 4 cut(s) 393, 601, 981, 1301
BmgT120I GGNCC 5 cut(s) 189, 393, 601, 981, 1301
BmiI GGNNCC 5 cut(s) 6, 767, 1019, 1302, 1566
BmrFI CCNGG 2 cut(s) 406, 971
BmsI GCATC 3 cut(s) 553, 880, 1892
BpiI GAAGAC 4 cut(s) 1066, 1319, 1676, 1719
BpuEI CTTGAG 2 cut(s) 107, 1775
BsaJI CCNNGG 4 cut(s) 365, 843, 1614, 1939
Bsc4I CCNNNNNNNGG 2 cut(s) 959, 1561
Bse1I ACTGG 3 cut(s) 504, 817, 1678
Bse21I CCTNAGG 2 cut(s) 1470, 1748
Bse3DI GCAATG 4 cut(s) 216, 324, 631, 1179
BseBI CCWGG 2 cut(s) 406, 971
BseDI CCNNGG 4 cut(s) 365, 843, 1614, 1939
BseGI GGATG 6 cut(s) 521, 724, 1003, 1211, 1538, 1812
BseLI CCNNNNNNNGG 2 cut(s) 959, 1561
BseMI GCAATG 4 cut(s) 216, 324, 631, 1179
BseMII CTCAG 4 cut(s) 27, 1461, 1701, 1752
BseNI ACTGG 3 cut(s) 504, 817, 1678
BseXI GCAGC 4 cut(s) 159, 569, 745, 1321
BseYI CCCAGC 1 cut(s) 1636
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 3 cut(s) 191, 679, 1889
BsiHKAI GWGCWC 2 cut(s) 110, 1195
BslFI GGGAC 1 cut(s) 975
BslI CCNNNNNNNGG 2 cut(s) 959, 1561
BsmAI GTCTC 2 cut(s) 678, 760
BsmFI GGGAC 1 cut(s) 975
BsmI GAATGC 2 cut(s) 182, 1294
BsnI GGCC 3 cut(s) 191, 679, 1889
Bsp1286I GDGCHC 3 cut(s) 110, 249, 1195
Bsp143I GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
Bsp19I CCATGG 2 cut(s) 843, 1614
BspACI CCGC 1 cut(s) 1288
BspANI GGCC 3 cut(s) 191, 679, 1889
BspCNI CTCAG 4 cut(s) 26, 1462, 1702, 1753
BspLI GGNNCC 5 cut(s) 6, 767, 1019, 1302, 1566
BspMAI CTGCAG 1 cut(s) 1108
BspPI GGATC 4 cut(s) 533, 607, 1738, 1847
BspQI GCTCTTC 3 cut(s) 237, 1319, 1361
BspTI CTTAAG 1 cut(s) 920
BsrDI GCAATG 4 cut(s) 216, 324, 631, 1179
BsrI ACTGG 3 cut(s) 504, 817, 1678
BssECI CCNNGG 4 cut(s) 365, 843, 1614, 1939
BssMI GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
BssT1I CCWWGG 4 cut(s) 365, 843, 1614, 1939
Bst2UI CCWGG 2 cut(s) 406, 971
Bst4CI ACNGT 4 cut(s) 553, 1165, 1578, 1725
Bst6I CTCTTC 4 cut(s) 237, 1319, 1361, 1731
BstAFI CTTAAG 1 cut(s) 920
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 8 cut(s) 160, 648, 826, 976, 1148, 1292, 1857, 1863
BstDEI CTNAG 5 cut(s) 13, 1470, 1710, 1748, 1761
BstDSI CCRYGG 2 cut(s) 843, 1614
BstF5I GGATG 6 cut(s) 521, 724, 1003, 1211, 1538, 1812
BstHHI GCGC 1 cut(s) 1861
BstKTI GATC 7 cut(s) 496, 528, 615, 807, 1682, 1746, 1842
BstMAI GTCTC 2 cut(s) 678, 760
BstMBI GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
BstMWI GCNNNNNNNGC 6 cut(s) 188, 440, 563, 1190, 1291, 1633
BstNI CCWGG 2 cut(s) 406, 971
BstSCI CCNGG 2 cut(s) 404, 969
BstSFI CTRYAG 5 cut(s) 608, 790, 1104, 1843, 1959
BstV1I GCAGC 4 cut(s) 159, 569, 745, 1321
BstV2I GAAGAC 4 cut(s) 1066, 1319, 1676, 1719
BstX2I RGATCY 3 cut(s) 612, 1743, 1839
BstYI RGATCY 3 cut(s) 612, 1743, 1839
Bsu36I CCTNAGG 2 cut(s) 1470, 1748
BsuRI GGCC 3 cut(s) 191, 679, 1889
BtgI CCRYGG 2 cut(s) 843, 1614
BtsCI GGATG 6 cut(s) 521, 724, 1003, 1211, 1538, 1812
BtsI GCAGTG 3 cut(s) 108, 395, 1878
BtsIMutI CAGTG 4 cut(s) 108, 395, 1721, 1878
Cac8I GCNNGC 8 cut(s) 160, 648, 826, 976, 1148, 1292, 1857, 1863
CfoI GCGC 1 cut(s) 1861
Cfr13I GGNCC 5 cut(s) 189, 393, 601, 981, 1301
CsiI ACCWGGT 1 cut(s) 404
Csp6I GTAC 2 cut(s) 470, 640
CviAII CATG 9 cut(s) 123, 168, 193, 619, 762, 844, 1459, 1516, 1615
CviQI GTAC 2 cut(s) 470, 640
DdeI CTNAG 5 cut(s) 13, 1470, 1710, 1748, 1761
DpnI GATC 7 cut(s) 495, 527, 614, 806, 1681, 1745, 1841
DpnII GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
EaeI YGGCCR 2 cut(s) 677, 1887
Eam1104I CTCTTC 4 cut(s) 237, 1319, 1361, 1731
EarI CTCTTC 4 cut(s) 237, 1319, 1361, 1731
Eco130I CCWWGG 4 cut(s) 365, 843, 1614, 1939
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 1353
Eco47I GGWCC 4 cut(s) 393, 601, 981, 1301
Eco57I CTGAAG 1 cut(s) 1300
Eco81I CCTNAGG 2 cut(s) 1470, 1748
EcoO109I RGGNCCY 1 cut(s) 1301
EcoRII CCWGG 2 cut(s) 404, 969
EcoRV GATATC 1 cut(s) 1353
EcoT14I CCWWGG 4 cut(s) 365, 843, 1614, 1939
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 4 cut(s) 365, 843, 1614, 1939
FaeI CATG 9 cut(s) 126, 171, 196, 622, 765, 847, 1462, 1519, 1618
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 1358, 1390
FaqI GGGAC 1 cut(s) 975
FatI CATG 9 cut(s) 122, 167, 192, 618, 761, 843, 1458, 1515, 1614
FauNDI CATATG 1 cut(s) 568
FbaI TGATCA 1 cut(s) 804
Fnu4HI GCNGC 4 cut(s) 173, 558, 734, 1310
FokI GGATG 6 cut(s) 528, 731, 1010, 1218, 1525, 1799
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 173, 558, 734, 1310
FspBI CTAG 1 cut(s) 1151
GlaI GCGC 1 cut(s) 1860
GluI GCNGC 4 cut(s) 173, 558, 734, 1310
GsaI CCCAGC 1 cut(s) 1640
HaeIII GGCC 3 cut(s) 191, 679, 1889
HhaI GCGC 1 cut(s) 1861
Hin1II CATG 9 cut(s) 126, 171, 196, 622, 765, 847, 1462, 1519, 1618
Hin6I GCGC 1 cut(s) 1859
HinP1I GCGC 1 cut(s) 1859
HincII GTYRAC 2 cut(s) 424, 781
HindII GTYRAC 2 cut(s) 424, 781
HindIII AAGCTT 2 cut(s) 282, 1894
HphI GGTGA 2 cut(s) 1672, 1991
Hpy166II GTNNAC 6 cut(s) 424, 640, 781, 991, 1787, 1918
Hpy188III TCNNGA 7 cut(s) 31, 86, 491, 523, 953, 1140, 1582
Hpy8I GTNNAC 6 cut(s) 424, 640, 781, 991, 1787, 1918
HpyAV CCTTC 2 cut(s) 255, 614
HpyCH4III ACNGT 4 cut(s) 553, 1165, 1578, 1725
HpyCH4V TGCA 9 cut(s) 50, 388, 465, 566, 624, 733, 1106, 1309, 1883
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 440, 563, 1190, 1291, 1633
HpyF3I CTNAG 5 cut(s) 13, 1470, 1710, 1748, 1761
Hsp92II CATG 9 cut(s) 126, 171, 196, 622, 765, 847, 1462, 1519, 1618
HspAI GCGC 1 cut(s) 1859
Ksp22I TGATCA 1 cut(s) 804
Kzo9I GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
LguI GCTCTTC 3 cut(s) 237, 1319, 1361
LmnI GCTCC 3 cut(s) 10, 439, 1023
Lsp1109I GCAGC 4 cut(s) 159, 569, 745, 1321
LweI GCATC 3 cut(s) 553, 880, 1892
MabI ACCWGGT 1 cut(s) 404
MaeI CTAG 1 cut(s) 1151
MaeIII GTNAC 4 cut(s) 22, 815, 1597, 1660
MalI GATC 7 cut(s) 495, 527, 614, 806, 1681, 1745, 1841
MboI GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
MfeI CAATTG 2 cut(s) 300, 651
MflI RGATCY 3 cut(s) 612, 1743, 1839
MhlI GDGCHC 3 cut(s) 110, 249, 1195
MlsI TGGCCA 1 cut(s) 679
MluNI TGGCCA 1 cut(s) 679
MlyI GAGTC 4 cut(s) 707, 1245, 1265, 1772
MmeI TCCRAC 1 cut(s) 1947
Mox20I TGGCCA 1 cut(s) 679
Mph1103I ATGCAT 1 cut(s) 568
MscI TGGCCA 1 cut(s) 679
MslI CAYNNNNRTG 2 cut(s) 1200, 1514
Msp20I TGGCCA 1 cut(s) 679
MspA1I CMGCKG 2 cut(s) 1290, 1636
MspCI CTTAAG 1 cut(s) 920
MspR9I CCNGG 2 cut(s) 406, 971
MunI CAATTG 2 cut(s) 300, 651
Mva1269I GAATGC 2 cut(s) 182, 1294
MvaI CCWGG 2 cut(s) 406, 971
MwoI GCNNNNNNNGC 6 cut(s) 188, 440, 563, 1190, 1291, 1633
NcoI CCATGG 2 cut(s) 843, 1614
NdeI CATATG 1 cut(s) 568
NdeII GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
NlaIII CATG 9 cut(s) 126, 171, 196, 622, 765, 847, 1462, 1519, 1618
NlaIV GGNNCC 5 cut(s) 6, 767, 1019, 1302, 1566
NmuCI GTSAC 2 cut(s) 1597, 1660
NsiI ATGCAT 1 cut(s) 568
PciSI GCTCTTC 3 cut(s) 237, 1319, 1361
PctI GAATGC 2 cut(s) 182, 1294
PflFI GACNNNGTC 2 cut(s) 406, 752
PkrI GCNGC 4 cut(s) 174, 559, 735, 1311
PleI GAGTC 4 cut(s) 707, 1244, 1264, 1771
PpsI GAGTC 4 cut(s) 707, 1244, 1264, 1771
PpuMI RGGWCCY 1 cut(s) 1301
Psp5II RGGWCCY 1 cut(s) 1301
Psp6I CCWGG 2 cut(s) 404, 969
PspFI CCCAGC 1 cut(s) 1636
PspGI CCWGG 2 cut(s) 404, 969
PspN4I GGNNCC 5 cut(s) 6, 767, 1019, 1302, 1566
PspPI GGNCC 5 cut(s) 189, 393, 601, 981, 1301
PspPPI RGGWCCY 1 cut(s) 1301
PstI CTGCAG 1 cut(s) 1108
PsuI RGATCY 3 cut(s) 612, 1743, 1839
PsyI GACNNNGTC 2 cut(s) 406, 752
PvuII CAGCTG 1 cut(s) 1636
RsaI GTAC 2 cut(s) 471, 641
RsaNI GTAC 2 cut(s) 470, 640
RseI CAYNNNNRTG 2 cut(s) 1200, 1514
SapI GCTCTTC 3 cut(s) 237, 1319, 1361
SatI GCNGC 4 cut(s) 173, 558, 734, 1310
Sau3AI GATC 7 cut(s) 493, 525, 612, 804, 1679, 1743, 1839
Sau96I GGNCC 5 cut(s) 189, 393, 601, 981, 1301
SchI GAGTC 4 cut(s) 707, 1245, 1265, 1772
ScrFI CCNGG 2 cut(s) 406, 971
SduI GDGCHC 3 cut(s) 110, 249, 1195
SexAI ACCWGGT 1 cut(s) 404
SfaNI GCATC 3 cut(s) 553, 880, 1892
SfcI CTRYAG 5 cut(s) 608, 790, 1104, 1843, 1959
SinI GGWCC 4 cut(s) 393, 601, 981, 1301
SmiMI CAYNNNNRTG 2 cut(s) 1200, 1514
SmlI CTYRAG 3 cut(s) 86, 920, 1790
SmoI CTYRAG 3 cut(s) 86, 920, 1790
SsiI CCGC 1 cut(s) 1288
SspI AATATT 2 cut(s) 153, 885
SspMI CTAG 1 cut(s) 1151
StyD4I CCNGG 2 cut(s) 404, 969
StyI CCWWGG 4 cut(s) 365, 843, 1614, 1939
TaaI ACNGT 4 cut(s) 553, 1165, 1578, 1725
TaqI TCGA 4 cut(s) 30, 496, 1189, 1581
TatI WGTACW 1 cut(s) 469
TscAI CASTG 4 cut(s) 108, 395, 1728, 1885
TseFI GTSAC 2 cut(s) 1597, 1660
TseI GCWGC 4 cut(s) 172, 557, 733, 1309
Tsp45I GTSAC 2 cut(s) 1597, 1660
TspDTI ATGAA 7 cut(s) 63, 156, 255, 265, 1278, 1504, 1749
TspGWI ACGGA 1 cut(s) 1926
TspRI CASTG 4 cut(s) 108, 395, 1728, 1885
Tth111I GACNNNGTC 2 cut(s) 406, 752
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 4 cut(s) 393, 601, 981, 1301
XapI RAATTY 4 cut(s) 346, 458, 727, 1211
XspI CTAG 1 cut(s) 1151
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.