Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003649.1

Orthogroup ID

OG0006196

Physical Location & Seq

Genomic Coordinates Reverse (-)

24591 .. 26843

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003649.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

atggctccaaacaactcagttgcaatcacaatccagaagccaaacaactctttctcaaaggcaaagtctttggagtcctctgttttctttgagaagcagaaagcagcgagccccaagcaattcacatgggttcttcttctcaaagtcaacagaatctttgcttgtctttcatggcttccaatggcattcagaaaacgcattgctttatcggatatgagcgatgaggagccgaggaatcgaggaaagttgtacagattcatcaaggcttttcttatgttgtcaattgtggctttgggagttgaagttattgctcattacaagaaatggaatttaaatctggttcatcatccatcttgggaagttcagggtctggtgcggtggtcctatatggcttggttgtctttcagagttgactatattgcaccagtggctatcttcctctctaaattctgcattgttctgttcctgattcagtctcttgatagattggttttgtgtcttggatgtttctgggtcaagttcaagaaggtaaagcctatgattgagccagatgcttatgatgttgaagacccttctagcttcccaatggtccttcttcagattcccatgtgcaatgagagagaggtgtacgaacaagccattgccgccgcatgccagatggattggcctagggacagacttttgattcaagttttggacgactcggacgacatagttctacagaatttaatccaagatgaaatctcggcatggaatcagaaaggcattaacataatctacaggcacagattgatcagaactggctacaaagctgggaatcttaaatcggccatgggatgtgagtatgtcaaacactacgagtttgtggcaatttttgatgctgatttcacacccaatcctgatttccttaaactcactgttcctcacttcaagggaaatccagaattaggactagtccaggctaggtggtcatttgtgaacaaggatgagaatttacttacaaggctgcaaaacatcaacttgtgcttccattttgaagtggagcagcaagttaatggtgtctttctcaatttcttcggattcaatggaactgcaggagtttggagaattaaggccctggaagaatcaggaggttggctagagagaacaacagttgaagacatggacattgcagttcgagcacacttgaatgggtggaaattcatcttcctcaatgatgtaaaagccctctgtgaattaccagagtcttatgaaacttataagaagcagcagcatcgatggcattcaggtccgatgcagctcttcagattatgccttcctgctatcttaacttccaagatatctatattcaagaaggccaacttaatatttctattctttcttttgaggaagctaattcttcccttttactcattcacattgttctgcatcatacttccattgaccatgttcatacctgaggctgaattacctctttgggtaatttgctatgtaccaattttcatgtccttcctcaacattctaccatccccaaaatctttccctttcctagtcccataccttctctttgaaaacacaatgtccgtcacaaaattcaatgccatggtctccggcctatttcagctgggaagttcttatgagtgggtggtgacaaagaagaccggaagatcatctgagtcagatttgttagcgtttgctgaaagggaatcgtcaaatgatgagaagatcctaaggaggaactctgagtctggtttagaatcgttaagtaaactcaaggaacaagaagtagcagcacctcccaagaaaaagaagaaaaatgggatttataggaaggaacttgctctttcttttctgctactcacagcctcagcaagaagtttcctatcggaacatggagttcacttctatttcttgcttttccaaggcttgtcatttcttgttgtaggtttggacttaataggtgagcagattagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

658

Amino Acids

75.89

Weight (kDa)

8.9

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28180
fragaria_vesca	FvH4_6g50280 FvH4_6g52870
malus_domestica	MD09G1037900.v1.1 MD17G1038900.v1.1
prunus_persica	Prupe.3G280100_v2.0.a1
pyrus_communis	pycom111g03020 pycom17g03510
rosa_chinensis	RchiOBHm_Chr2g0170601 RchiOBHm_Chr2g0174571
rosa_laevigata	RLG00000021967 RLG00000022274
rosa_multiflora	Rmu_sc0003649.1_g000006
rosa_roxburghii	Rroxscaffold_2G00078050 Rroxscaffold_2G00081190
rosa_rugosa	Rorug02G0549700 Rorug02G0577900
rosa_samantha	Rh2AG621800 Rh2AG659000 Rh2BG633200 Rh2BG669800 Rh2CG602500 Rh2CG633000 Rh2DG646000 Rh2DG683500
rosa_wichuraiana	Rw2G051560 Rw2G053960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1260
AciI	CCGC	3 cut(s)	376, 645, 648
AclWI	GGATC	1 cut(s)	1720
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	6 cut(s)	328, 446, 724, 991, 1199, 1592
AcuI	CTGAAG	2 cut(s)	581, 1288
AfaI	GTAC	3 cut(s)	251, 629, 1494
AfiI	CCNNNNNNNGG	1 cut(s)	947
AhlI	ACTAGT	1 cut(s)	952
AjnI	CCWGG	2 cut(s)	957, 1116
AjuI	GAANNNNNNNTTGG	2 cut(s)	887, 919
AluBI	AGCT	6 cut(s)	579, 812, 1300, 1393, 1624, 1974
AluI	AGCT	6 cut(s)	579, 812, 1300, 1393, 1624, 1974
Alw21I	GWGCWC	1 cut(s)	1183
Alw26I	GTCTC	2 cut(s)	480, 1612
AlwI	GGATC	1 cut(s)	1720
AlwNI	CAGNNNCTG	1 cut(s)	370
AoxI	GGCC	5 cut(s)	665, 828, 1113, 1356, 1612
ApeKI	GCWGC	7 cut(s)	104, 1006, 1045, 1267, 1270, 1297, 1790
ApoI	RAATTY	6 cut(s)	328, 446, 724, 991, 1199, 1592
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspA2I	CCTAGG	1 cut(s)	668
AspS9I	GGNCC	4 cut(s)	381, 589, 1114, 1289
AsuHPI	GGTGA	2 cut(s)	1660, 1973
AvaII	GGWCC	3 cut(s)	381, 589, 1289
AvrII	CCTAGG	1 cut(s)	668
AxyI	CCTNAGG	2 cut(s)	1458, 1730
BanII	GRGCYC	1 cut(s)	113
BbsI	GAAGAC	3 cut(s)	573, 1164, 1664
Bbv12I	GWGCWC	1 cut(s)	1183
BbvCI	CCTCAGC	1 cut(s)	1867
BbvI	GCAGC	7 cut(s)	116, 993, 1057, 1279, 1282, 1309, 1802
BccI	CCATC	4 cut(s)	358, 652, 1272, 1534
BcgI	CGANNNNNNTGC	2 cut(s)	1256, 1290
BciT130I	CCWGG	2 cut(s)	959, 1118
BclI	TGATCA	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	480, 1612
BcuI	ACTAGT	1 cut(s)	952
BfaI	CTAG	6 cut(s)	576, 669, 953, 963, 1139, 1550
BfmI	CTRYAG	3 cut(s)	719, 778, 1092
BisI	GCNGC	9 cut(s)	105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
BlnI	CCTAGG	1 cut(s)	668
BlsI	GCNGC	9 cut(s)	106, 646, 649, 1008, 1047, 1269, 1272, 1299, 1792
Bme1390I	CCNGG	2 cut(s)	959, 1118
Bme18I	GGWCC	3 cut(s)	381, 589, 1289
BmgT120I	GGNCC	4 cut(s)	381, 589, 1114, 1289
BmiI	GGNNCC	2 cut(s)	6, 228
BmrFI	CCNGG	2 cut(s)	959, 1118
BmsI	GCATC	5 cut(s)	541, 868, 1282, 1284, 1437
BpiI	GAAGAC	3 cut(s)	573, 1164, 1664
Bpu10I	CCTNAGC	1 cut(s)	1867
BpuEI	CTTGAG	1 cut(s)	1757
Bsa29I	ATCGAT	1 cut(s)	1276
BsaI	GGTCTC	1 cut(s)	1612
BsaJI	CCNNGG	6 cut(s)	230, 668, 831, 1116, 1602, 1921
BsaWI	WCCGGW	1 cut(s)	1661
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	947
Bse1I	ACTGG	2 cut(s)	425, 805
Bse21I	CCTNAGG	2 cut(s)	1458, 1730
Bse3DI	GCAATG	4 cut(s)	198, 619, 639, 1167
BseBI	CCWGG	2 cut(s)	959, 1118
BseCI	ATCGAT	1 cut(s)	1276
BseDI	CCNNGG	6 cut(s)	230, 668, 831, 1116, 1602, 1921
BseGI	GGATG	5 cut(s)	346, 509, 842, 991, 1526
BseLI	CCNNNNNNNGG	1 cut(s)	947
BseMI	GCAATG	4 cut(s)	198, 619, 639, 1167
BseMII	CTCAG	5 cut(s)	30, 1449, 1665, 1734, 1881
BseNI	ACTGG	2 cut(s)	425, 805
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	7 cut(s)	116, 993, 1057, 1279, 1282, 1309, 1802
BseYI	CCCAGC	2 cut(s)	812, 1624
BshFI	GGCC	5 cut(s)	667, 830, 1115, 1358, 1614
BshVI	ATCGAT	1 cut(s)	1276
BsiHKAI	GWGCWC	1 cut(s)	1183
BsiSI	CCGG	2 cut(s)	1611, 1662
BslFI	GGGAC	2 cut(s)	686, 1538
BslI	CCNNNNNNNGG	1 cut(s)	947
BsmAI	GTCTC	2 cut(s)	480, 1612
BsmFI	GGGAC	2 cut(s)	686, 1538
BsmI	GAATGC	2 cut(s)	185, 1282
BsnI	GGCC	5 cut(s)	667, 830, 1115, 1358, 1614
Bso31I	GGTCTC	1 cut(s)	1612
Bsp1286I	GDGCHC	2 cut(s)	113, 1183
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	792, 1667, 1725
Bsp19I	CCATGG	2 cut(s)	831, 1602
BspACI	CCGC	3 cut(s)	376, 645, 648
BspANI	GGCC	5 cut(s)	667, 830, 1115, 1358, 1614
BspCNI	CTCAG	5 cut(s)	29, 1450, 1666, 1735, 1880
BspDI	ATCGAT	1 cut(s)	1276
BspLI	GGNNCC	2 cut(s)	6, 228
BspMAI	CTGCAG	1 cut(s)	1096
BspPI	GGATC	1 cut(s)	1720
BspQI	GCTCTTC	1 cut(s)	1307
BspTNI	GGTCTC	1 cut(s)	1612
BsrDI	GCAATG	4 cut(s)	198, 619, 639, 1167
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	425, 805
BssECI	CCNNGG	6 cut(s)	230, 668, 831, 1116, 1602, 1921
BssMI	GATC	3 cut(s)	792, 1667, 1725
BssT1I	CCWWGG	4 cut(s)	668, 831, 1602, 1921
Bst2UI	CCWGG	2 cut(s)	959, 1118
Bst4CI	ACNGT	2 cut(s)	919, 1153
Bst6I	CTCTTC	1 cut(s)	1307
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	109, 652
BstDEI	CTNAG	6 cut(s)	16, 1458, 1674, 1730, 1743, 1867
BstDSI	CCRYGG	2 cut(s)	831, 1602
BstF5I	GGATG	5 cut(s)	346, 509, 842, 991, 1526
BstKTI	GATC	3 cut(s)	795, 1670, 1728
BstMAI	GTCTC	2 cut(s)	480, 1612
BstMBI	GATC	3 cut(s)	792, 1667, 1725
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 644, 1178, 1279
BstNI	CCWGG	2 cut(s)	959, 1118
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	957, 1116
BstSFI	CTRYAG	3 cut(s)	719, 778, 1092
BstV1I	GCAGC	7 cut(s)	116, 993, 1057, 1279, 1282, 1309, 1802
BstV2I	GAAGAC	3 cut(s)	573, 1164, 1664
BstX2I	RGATCY	1 cut(s)	1725
BstYI	RGATCY	1 cut(s)	1725
Bsu15I	ATCGAT	1 cut(s)	1276
Bsu36I	CCTNAGG	2 cut(s)	1458, 1730
BsuRI	GGCC	5 cut(s)	667, 830, 1115, 1358, 1614
BsuTUI	ATCGAT	1 cut(s)	1276
BtgI	CCRYGG	2 cut(s)	831, 1602
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	5 cut(s)	346, 509, 842, 991, 1526
BtsIMutI	CAGTG	2 cut(s)	432, 915
Cac8I	GCNNGC	2 cut(s)	109, 652
CaiI	CAGNNNCTG	1 cut(s)	370
Cfr13I	GGNCC	4 cut(s)	381, 589, 1114, 1289
ClaI	ATCGAT	1 cut(s)	1276
Csp6I	GTAC	3 cut(s)	250, 628, 1493
CviQI	GTAC	3 cut(s)	250, 628, 1493
DdeI	CTNAG	6 cut(s)	16, 1458, 1674, 1730, 1743, 1867
DpnI	GATC	3 cut(s)	794, 1669, 1727
DpnII	GATC	3 cut(s)	792, 1667, 1725
DraI	TTTAAA	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	1307
EarI	CTCTTC	1 cut(s)	1307
Eco130I	CCWWGG	4 cut(s)	668, 831, 1602, 1921
Eco24I	GRGCYC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	1612
Eco32I	GATATC	1 cut(s)	1341
Eco47I	GGWCC	3 cut(s)	381, 589, 1289
Eco57I	CTGAAG	2 cut(s)	581, 1288
Eco81I	CCTNAGG	2 cut(s)	1458, 1730
EcoO109I	RGGNCCY	1 cut(s)	1114
EcoRII	CCWGG	2 cut(s)	957, 1116
EcoRV	GATATC	1 cut(s)	1341
EcoT14I	CCWWGG	4 cut(s)	668, 831, 1602, 1921
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	4 cut(s)	668, 831, 1602, 1921
FalI	AAGNNNNNCTT	2 cut(s)	1346, 1378
FaqI	GGGAC	2 cut(s)	686, 1538
FbaI	TGATCA	1 cut(s)	792
Fnu4HI	GCNGC	9 cut(s)	105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
FokI	GGATG	5 cut(s)	333, 516, 849, 998, 1513
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	9 cut(s)	105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
FspBI	CTAG	6 cut(s)	576, 669, 953, 963, 1139, 1550
GluI	GCNGC	9 cut(s)	105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
GsaI	CCCAGC	2 cut(s)	816, 1628
HaeIII	GGCC	5 cut(s)	667, 830, 1115, 1358, 1614
HapII	CCGG	2 cut(s)	1611, 1662
HincII	GTYRAC	2 cut(s)	148, 412
HindII	GTYRAC	2 cut(s)	148, 412
HpaII	CCGG	2 cut(s)	1611, 1662
HphI	GGTGA	2 cut(s)	1660, 1973
Hpy166II	GTNNAC	6 cut(s)	148, 412, 628, 979, 1769, 1900
Hpy188III	TCNNGA	8 cut(s)	34, 466, 479, 523, 899, 941, 1128, 1351
Hpy8I	GTNNAC	6 cut(s)	148, 412, 628, 979, 1769, 1900
HpyAV	CCTTC	8 cut(s)	520, 582, 602, 1325, 1348, 1519, 1571, 1825
HpyCH4III	ACNGT	2 cut(s)	919, 1153
HpyCH4V	TGCA	9 cut(s)	23, 422, 453, 612, 1009, 1094, 1172, 1297, 1428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 644, 1178, 1279
HpyF3I	CTNAG	6 cut(s)	16, 1458, 1674, 1730, 1743, 1867
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	3 cut(s)	792, 1667, 1725
LguI	GCTCTTC	1 cut(s)	1307
LmnI	GCTCC	3 cut(s)	10, 226, 1042
Lsp1109I	GCAGC	7 cut(s)	116, 993, 1057, 1279, 1282, 1309, 1802
LweI	GCATC	5 cut(s)	541, 868, 1282, 1284, 1437
MaeI	CTAG	6 cut(s)	576, 669, 953, 963, 1139, 1550
MaeIII	GTNAC	2 cut(s)	1585, 1648
MalI	GATC	3 cut(s)	794, 1669, 1727
MboI	GATC	3 cut(s)	792, 1667, 1725
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	1725
MhlI	GDGCHC	2 cut(s)	113, 1183
MlyI	GAGTC	5 cut(s)	83, 695, 1253, 1685, 1754
MslI	CAYNNNNRTG	1 cut(s)	1188
MspA1I	CMGCKG	1 cut(s)	1624
MspI	CCGG	2 cut(s)	1611, 1662
MspR9I	CCNGG	2 cut(s)	959, 1118
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	2 cut(s)	185, 1282
MvaI	CCWGG	2 cut(s)	959, 1118
MwoI	GCNNNNNNNGC	4 cut(s)	428, 644, 1178, 1279
NcoI	CCATGG	2 cut(s)	831, 1602
NdeII	GATC	3 cut(s)	792, 1667, 1725
NlaIV	GGNNCC	2 cut(s)	6, 228
NmeAIII	GCCGAG	2 cut(s)	255, 725
NmuCI	GTSAC	2 cut(s)	1585, 1648
NspI	RCATGY	1 cut(s)	654
PaeI	GCATGC	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	1307
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PctI	GAATGC	2 cut(s)	185, 1282
PkrI	GCNGC	9 cut(s)	106, 646, 649, 1008, 1047, 1269, 1272, 1299, 1792
PleI	GAGTC	5 cut(s)	82, 695, 1252, 1684, 1753
PpsI	GAGTC	5 cut(s)	82, 695, 1252, 1684, 1753
PsiI	TTATAA	1 cut(s)	1260
Psp6I	CCWGG	2 cut(s)	957, 1116
PspFI	CCCAGC	2 cut(s)	812, 1624
PspGI	CCWGG	2 cut(s)	957, 1116
PspN4I	GGNNCC	2 cut(s)	6, 228
PspPI	GGNCC	4 cut(s)	381, 589, 1114, 1289
PstI	CTGCAG	1 cut(s)	1096
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	1725
PvuII	CAGCTG	1 cut(s)	1624
RsaI	GTAC	3 cut(s)	251, 629, 1494
RsaNI	GTAC	3 cut(s)	250, 628, 1493
RseI	CAYNNNNRTG	1 cut(s)	1188
SapI	GCTCTTC	1 cut(s)	1307
SatI	GCNGC	9 cut(s)	105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
Sau3AI	GATC	3 cut(s)	792, 1667, 1725
Sau96I	GGNCC	4 cut(s)	381, 589, 1114, 1289
SchI	GAGTC	5 cut(s)	83, 695, 1253, 1685, 1754
ScrFI	CCNGG	2 cut(s)	959, 1118
SduI	GDGCHC	2 cut(s)	113, 1183
SfaNI	GCATC	5 cut(s)	541, 868, 1282, 1284, 1437
SfcI	CTRYAG	3 cut(s)	719, 778, 1092
SinI	GGWCC	3 cut(s)	381, 589, 1289
SmiI	ATTTAAAT	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	1188
SmlI	CTYRAG	1 cut(s)	1772
SmoI	CTYRAG	1 cut(s)	1772
SpeI	ACTAGT	1 cut(s)	952
SphI	GCATGC	1 cut(s)	654
SsiI	CCGC	3 cut(s)	376, 645, 648
SspI	AATATT	1 cut(s)	1368
SspMI	CTAG	6 cut(s)	576, 669, 953, 963, 1139, 1550
StyD4I	CCNGG	2 cut(s)	957, 1116
StyI	CCWWGG	4 cut(s)	668, 831, 1602, 1921
SwaI	ATTTAAAT	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	919, 1153
TaqI	TCGA	3 cut(s)	238, 1177, 1276
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	647, 650
TscAI	CASTG	2 cut(s)	432, 922
TseFI	GTSAC	2 cut(s)	1585, 1648
TseI	GCWGC	7 cut(s)	104, 1006, 1045, 1267, 1270, 1297, 1790
Tsp45I	GTSAC	2 cut(s)	1585, 1648
TspDTI	ATGAA	8 cut(s)	159, 247, 332, 753, 1192, 1266, 1441, 1492
TspGWI	ACGGA	1 cut(s)	1573
TspRI	CASTG	2 cut(s)	432, 922
VpaK11BI	GGWCC	3 cut(s)	381, 589, 1289
XapI	RAATTY	6 cut(s)	328, 446, 724, 991, 1199, 1592
XceI	RCATGY	1 cut(s)	654
XmaJI	CCTAGG	1 cut(s)	668
XspI	CTAG	6 cut(s)	576, 669, 953, 963, 1139, 1550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.