Rh2AG659000

Xyloglucan glycosyltransferase 4-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
87523309 .. 87526465
3157 bp
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UTR
Exon/CDS
Intron
Rh2AG659000.1

Sequence Viewer

Length: 1977 bp
ATGGCTCCAAACAACTCAGTTGCAATCACAATCCAGAAGCCAAACAACTCTTTCTCAAAGGCAAAGTCTTTGGAGTCCTCTGTTTTCTTTGAGAAGCAGAAAGCAGCGAGCCCCAAGCAATTCACATGGGTTCTTCTTCTCAAAGTCAACAGAATCTTTGCTTGTCTTTCATGGCTTCCAATGGCATTCAGAAAACGCATTGCTTTATCGGATATGAGCGATGAGGAGCCGAGGAATCGAGGAAAGTTGTACAGATTCATCAAGGCTTTTCTTATGTTGTCAATTGTGGCTTTGGGAGTTGAAGTTATTGCTCATTACAAGAAATGGAATTTAAATCTGGTTCATCATCCATCTTGGGAAGTTCAGGGTCTGGTGCGGTGGTCCTATATGGCTTGGTTGTCTTTCAGAGTTGACTATATTGCACCAGTGGTTATCTTCCTCTCTAAATTCTGCATTGTTCTGTTCCTGATTCAGTCTCTTGATAGATTGGTTTTGTGTCTTGGATGTTTCTGGATCAAGTTCAAGAAGGTAAAGCCTAGGATTGAGCCAGATGCTTATGATGTTGAAGACCCTTCTAGCTTCCCAATGGTCCTTCTTCAGATTCCCATGTGCAATGAGAGAGAGGTGTACGAACAAGCCATTGCCGCCGCATGCCAGATGGATTGGCCTAGGGACAGACTTTTGATTCAAGTTTTGGACGACTCGGACGACATAGTTCTACAGAATTTAATCCAAGATGAAATCTCGGCATGGAATCAGAAAGGCATTAACATAATCTACAGGCACAGATTGATCAGAACTGGCTACAAAGCTGGGAATCTTAAATCGGCCATGGGATGTGAGTATGTCAAACACTACGAGTTTGTGGCAATTTTTGATGCTGATTTCACACCCAATCCTGATTTCCTTAAACTCACTGTTCCTCACTTCAAGGGAAATCCAGAATTAGGACTAGTCCAGGCTAGGTGGTCATTTGTGAACAAGGATGAGAATTTACTTACAAGGCTGCAAAACATCAACTTGTGCTTCCATTTTGAAGTGGAGCAGCAAGTTAATGGTGTCTTTCTCAATTTCTTCGGATTCAATGGAACTGCAGGAGTTTGGAGAATTAAGGCCCTGGAAGAATCAGGAGGTTGGCTAGAGAGAACAACAGTTGAAGACATGGACATTGCAGTTCGAGCACACTTGAATGGGTGGAAATTCATCTTCCTCAATGATGTAAAAGCCCTCTGTGAATTACCAGAGTCTTATGAAACTTATAAAAAGCAGCAGCATCGATGGCATTCAGGTCCGATGCAGCTCTTCAGACTATGCCTTCCTGCTATCTTAACTTCCAAGATATCTATATTCAAGAAGGCCAACTTAATATTTCTATTCTTTCTTTTGAGGAAGCTAATTCTTCCCTTTTACTCATTCACATTGTTCTGCATCATACTTCCATTGACCATGTTCATACCTGAGGCTGAATTACCTCTTTGGGTAATTTGCTATGTACCAATTTTCATGTCCTTCCTCAACATTCTACCATGCCCAAAATCTTTCCCTTTCCTAGTCCCATACCTACTCTTTGAAAACACAATGTCTGTCACAAAATTCAATGCCATGGTCTCCGGCCTATTTCAGCTGGGAAGTTCTTATGAGTGGGTGGTGACAAAGAAGACCGGAAGATCATCTGAGTCAGATTTGTTAGCGTTTGCTGAAAGGGAATCGTCAAATGATGAGAAGATCCTAAGGAGGAACTCTGAGTCTGGTTTAGAATCGTTAAGTAAACTCAAGGAACAAGAAGTAGCAGCACCTCCCAAGAAAAAAAAGAAAAATGGGATTTATAGGAAGGAACTTGCTCTTGCTCTTCTGCTACTCACAGCATCAGCAAGAAGTTTCCTATCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGCTTGTCATTTCTTGTTGTAGGTTTGGACTTAATAGGTGAGCAGATTAGCTAA

Protein Analysis

658

Amino Acids

75.92

Weight (kDa)

8.93

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 196 - 428 1.7e-10 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 201 - 349 6e-07 Glycosyl transferase family 2
Glyco_transf_21 PF13506 279 - 427 1.6e-06 Glycosyl transferase family 21
Glyco_trans_2_3 PF13632 289 - 495 1.5e-18 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
AciI CCGC 3 cut(s) 376, 645, 648
AclWI GGATC 2 cut(s) 521, 1720
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 6 cut(s) 328, 446, 724, 991, 1199, 1592
AcuI CTGAAG 2 cut(s) 581, 1288
AfaI GTAC 3 cut(s) 251, 629, 1494
AfiI CCNNNNNNNGG 1 cut(s) 947
AhlI ACTAGT 1 cut(s) 952
AjnI CCWGG 2 cut(s) 957, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AluBI AGCT 6 cut(s) 579, 812, 1300, 1393, 1624, 1974
AluI AGCT 6 cut(s) 579, 812, 1300, 1393, 1624, 1974
Alw21I GWGCWC 1 cut(s) 1183
Alw26I GTCTC 2 cut(s) 480, 1612
AlwI GGATC 2 cut(s) 521, 1720
AlwNI CAGNNNCTG 1 cut(s) 370
AoxI GGCC 5 cut(s) 665, 828, 1113, 1356, 1612
ApeKI GCWGC 7 cut(s) 104, 1006, 1045, 1267, 1270, 1297, 1790
ApoI RAATTY 6 cut(s) 328, 446, 724, 991, 1199, 1592
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspA2I CCTAGG 2 cut(s) 536, 668
AspS9I GGNCC 4 cut(s) 381, 589, 1114, 1289
AsuHPI GGTGA 2 cut(s) 1660, 1973
AvaII GGWCC 3 cut(s) 381, 589, 1289
AvrII CCTAGG 2 cut(s) 536, 668
AxyI CCTNAGG 2 cut(s) 1458, 1730
BanII GRGCYC 1 cut(s) 113
BbsI GAAGAC 3 cut(s) 573, 1164, 1664
Bbv12I GWGCWC 1 cut(s) 1183
BbvI GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1802
BccI CCATC 3 cut(s) 358, 652, 1272
BcgI CGANNNNNNTGC 2 cut(s) 1256, 1290
BciT130I CCWGG 2 cut(s) 959, 1118
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 2 cut(s) 480, 1612
BcuI ACTAGT 1 cut(s) 952
BfaI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1550
BfmI CTRYAG 3 cut(s) 719, 778, 1092
BisI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
BlnI CCTAGG 2 cut(s) 536, 668
BlsI GCNGC 9 cut(s) 106, 646, 649, 1008, 1047, 1269, 1272, 1299, 1792
Bme1390I CCNGG 2 cut(s) 959, 1118
Bme18I GGWCC 3 cut(s) 381, 589, 1289
BmgT120I GGNCC 4 cut(s) 381, 589, 1114, 1289
BmiI GGNNCC 2 cut(s) 6, 228
BmrFI CCNGG 2 cut(s) 959, 1118
BmsI GCATC 6 cut(s) 541, 868, 1282, 1284, 1437, 1874
BpiI GAAGAC 3 cut(s) 573, 1164, 1664
BpuEI CTTGAG 1 cut(s) 1757
Bsa29I ATCGAT 1 cut(s) 1276
BsaI GGTCTC 1 cut(s) 1612
BsaJI CCNNGG 7 cut(s) 230, 536, 668, 831, 1116, 1602, 1921
BsaWI WCCGGW 1 cut(s) 1661
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 947
Bse1I ACTGG 2 cut(s) 425, 805
Bse21I CCTNAGG 2 cut(s) 1458, 1730
Bse3DI GCAATG 4 cut(s) 198, 619, 639, 1167
BseBI CCWGG 2 cut(s) 959, 1118
BseCI ATCGAT 1 cut(s) 1276
BseDI CCNNGG 7 cut(s) 230, 536, 668, 831, 1116, 1602, 1921
BseGI GGATG 4 cut(s) 346, 509, 842, 991
BseLI CCNNNNNNNGG 1 cut(s) 947
BseMI GCAATG 4 cut(s) 198, 619, 639, 1167
BseMII CTCAG 4 cut(s) 30, 1449, 1665, 1734
BseNI ACTGG 2 cut(s) 425, 805
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1802
BseYI CCCAGC 2 cut(s) 812, 1624
BshFI GGCC 5 cut(s) 667, 830, 1115, 1358, 1614
BshVI ATCGAT 1 cut(s) 1276
BsiHKAI GWGCWC 1 cut(s) 1183
BsiSI CCGG 2 cut(s) 1611, 1662
BslFI GGGAC 2 cut(s) 686, 1538
BslI CCNNNNNNNGG 1 cut(s) 947
BsmAI GTCTC 2 cut(s) 480, 1612
BsmFI GGGAC 2 cut(s) 686, 1538
BsmI GAATGC 2 cut(s) 185, 1282
BsnI GGCC 5 cut(s) 667, 830, 1115, 1358, 1614
Bso31I GGTCTC 1 cut(s) 1612
Bsp1286I GDGCHC 2 cut(s) 113, 1183
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 4 cut(s) 513, 792, 1667, 1725
Bsp19I CCATGG 2 cut(s) 831, 1602
BspACI CCGC 3 cut(s) 376, 645, 648
BspANI GGCC 5 cut(s) 667, 830, 1115, 1358, 1614
BspCNI CTCAG 4 cut(s) 29, 1450, 1666, 1735
BspDI ATCGAT 1 cut(s) 1276
BspLI GGNNCC 2 cut(s) 6, 228
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 2 cut(s) 521, 1720
BspQI GCTCTTC 2 cut(s) 1307, 1854
BspTNI GGTCTC 1 cut(s) 1612
BsrDI GCAATG 4 cut(s) 198, 619, 639, 1167
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 2 cut(s) 425, 805
BssECI CCNNGG 7 cut(s) 230, 536, 668, 831, 1116, 1602, 1921
BssMI GATC 4 cut(s) 513, 792, 1667, 1725
BssT1I CCWWGG 5 cut(s) 536, 668, 831, 1602, 1921
Bst2UI CCWGG 2 cut(s) 959, 1118
Bst4CI ACNGT 2 cut(s) 919, 1153
Bst6I CTCTTC 2 cut(s) 1307, 1854
BstAUI TGTACA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 109, 652
BstDEI CTNAG 5 cut(s) 16, 1458, 1674, 1730, 1743
BstDSI CCRYGG 2 cut(s) 831, 1602
BstF5I GGATG 4 cut(s) 346, 509, 842, 991
BstKTI GATC 4 cut(s) 516, 795, 1670, 1728
BstMAI GTCTC 2 cut(s) 480, 1612
BstMBI GATC 4 cut(s) 513, 792, 1667, 1725
BstMWI GCNNNNNNNGC 3 cut(s) 644, 1178, 1279
BstNI CCWGG 2 cut(s) 959, 1118
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 957, 1116
BstSFI CTRYAG 3 cut(s) 719, 778, 1092
BstV1I GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1802
BstV2I GAAGAC 3 cut(s) 573, 1164, 1664
BstX2I RGATCY 1 cut(s) 1725
BstYI RGATCY 1 cut(s) 1725
Bsu15I ATCGAT 1 cut(s) 1276
Bsu36I CCTNAGG 2 cut(s) 1458, 1730
BsuRI GGCC 5 cut(s) 667, 830, 1115, 1358, 1614
BsuTUI ATCGAT 1 cut(s) 1276
BtgI CCRYGG 2 cut(s) 831, 1602
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 4 cut(s) 346, 509, 842, 991
BtsIMutI CAGTG 2 cut(s) 432, 915
Cac8I GCNNGC 2 cut(s) 109, 652
CaiI CAGNNNCTG 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 381, 589, 1114, 1289
ClaI ATCGAT 1 cut(s) 1276
Csp6I GTAC 3 cut(s) 250, 628, 1493
CviQI GTAC 3 cut(s) 250, 628, 1493
DdeI CTNAG 5 cut(s) 16, 1458, 1674, 1730, 1743
DpnI GATC 4 cut(s) 515, 794, 1669, 1727
DpnII GATC 4 cut(s) 513, 792, 1667, 1725
DraI TTTAAA 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 2 cut(s) 1307, 1854
EarI CTCTTC 2 cut(s) 1307, 1854
Eco130I CCWWGG 5 cut(s) 536, 668, 831, 1602, 1921
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 1612
Eco32I GATATC 1 cut(s) 1341
Eco47I GGWCC 3 cut(s) 381, 589, 1289
Eco57I CTGAAG 2 cut(s) 581, 1288
Eco81I CCTNAGG 2 cut(s) 1458, 1730
EcoO109I RGGNCCY 1 cut(s) 1114
EcoRII CCWGG 2 cut(s) 957, 1116
EcoRV GATATC 1 cut(s) 1341
EcoT14I CCWWGG 5 cut(s) 536, 668, 831, 1602, 1921
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 5 cut(s) 536, 668, 831, 1602, 1921
FalI AAGNNNNNCTT 2 cut(s) 1346, 1378
FaqI GGGAC 2 cut(s) 686, 1538
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
FokI GGATG 4 cut(s) 333, 516, 849, 998
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
FspBI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1550
GluI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
GsaI CCCAGC 2 cut(s) 816, 1628
HaeIII GGCC 5 cut(s) 667, 830, 1115, 1358, 1614
HapII CCGG 2 cut(s) 1611, 1662
HincII GTYRAC 2 cut(s) 148, 412
HindII GTYRAC 2 cut(s) 148, 412
HpaII CCGG 2 cut(s) 1611, 1662
HphI GGTGA 2 cut(s) 1660, 1973
Hpy166II GTNNAC 6 cut(s) 148, 412, 628, 979, 1769, 1900
Hpy188III TCNNGA 9 cut(s) 34, 466, 479, 511, 523, 899, 941, 1128, 1351
Hpy8I GTNNAC 6 cut(s) 148, 412, 628, 979, 1769, 1900
HpyAV CCTTC 7 cut(s) 520, 582, 602, 1325, 1348, 1519, 1825
HpyCH4III ACNGT 2 cut(s) 919, 1153
HpyCH4V TGCA 9 cut(s) 23, 422, 453, 612, 1009, 1094, 1172, 1297, 1428
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 1178, 1279
HpyF3I CTNAG 5 cut(s) 16, 1458, 1674, 1730, 1743
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 4 cut(s) 513, 792, 1667, 1725
LguI GCTCTTC 2 cut(s) 1307, 1854
LmnI GCTCC 3 cut(s) 10, 226, 1042
Lsp1109I GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1802
LweI GCATC 6 cut(s) 541, 868, 1282, 1284, 1437, 1874
MaeI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1550
MaeIII GTNAC 2 cut(s) 1585, 1648
MalI GATC 4 cut(s) 515, 794, 1669, 1727
MboI GATC 4 cut(s) 513, 792, 1667, 1725
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 1 cut(s) 1725
MhlI GDGCHC 2 cut(s) 113, 1183
MlyI GAGTC 5 cut(s) 83, 695, 1253, 1685, 1754
MslI CAYNNNNRTG 1 cut(s) 1188
MspA1I CMGCKG 1 cut(s) 1624
MspI CCGG 2 cut(s) 1611, 1662
MspR9I CCNGG 2 cut(s) 959, 1118
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 2 cut(s) 185, 1282
MvaI CCWGG 2 cut(s) 959, 1118
MwoI GCNNNNNNNGC 3 cut(s) 644, 1178, 1279
NcoI CCATGG 2 cut(s) 831, 1602
NdeII GATC 4 cut(s) 513, 792, 1667, 1725
NlaIV GGNNCC 2 cut(s) 6, 228
NmeAIII GCCGAG 2 cut(s) 255, 725
NmuCI GTSAC 2 cut(s) 1585, 1648
NspI RCATGY 1 cut(s) 654
PaeI GCATGC 1 cut(s) 654
PciSI GCTCTTC 2 cut(s) 1307, 1854
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PctI GAATGC 2 cut(s) 185, 1282
PkrI GCNGC 9 cut(s) 106, 646, 649, 1008, 1047, 1269, 1272, 1299, 1792
PleI GAGTC 5 cut(s) 82, 695, 1252, 1684, 1753
PpsI GAGTC 5 cut(s) 82, 695, 1252, 1684, 1753
PsiI TTATAA 1 cut(s) 1260
Psp6I CCWGG 2 cut(s) 957, 1116
PspFI CCCAGC 2 cut(s) 812, 1624
PspGI CCWGG 2 cut(s) 957, 1116
PspN4I GGNNCC 2 cut(s) 6, 228
PspPI GGNCC 4 cut(s) 381, 589, 1114, 1289
PstI CTGCAG 1 cut(s) 1096
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 1725
PvuII CAGCTG 1 cut(s) 1624
RsaI GTAC 3 cut(s) 251, 629, 1494
RsaNI GTAC 3 cut(s) 250, 628, 1493
RseI CAYNNNNRTG 1 cut(s) 1188
SapI GCTCTTC 2 cut(s) 1307, 1854
SatI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1791
Sau3AI GATC 4 cut(s) 513, 792, 1667, 1725
Sau96I GGNCC 4 cut(s) 381, 589, 1114, 1289
SchI GAGTC 5 cut(s) 83, 695, 1253, 1685, 1754
ScrFI CCNGG 2 cut(s) 959, 1118
SduI GDGCHC 2 cut(s) 113, 1183
SfaNI GCATC 6 cut(s) 541, 868, 1282, 1284, 1437, 1874
SfcI CTRYAG 3 cut(s) 719, 778, 1092
SinI GGWCC 3 cut(s) 381, 589, 1289
SmiI ATTTAAAT 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 1 cut(s) 1772
SmoI CTYRAG 1 cut(s) 1772
SpeI ACTAGT 1 cut(s) 952
SphI GCATGC 1 cut(s) 654
SsiI CCGC 3 cut(s) 376, 645, 648
SspI AATATT 1 cut(s) 1368
SspMI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1550
StyD4I CCNGG 2 cut(s) 957, 1116
StyI CCWWGG 5 cut(s) 536, 668, 831, 1602, 1921
SwaI ATTTAAAT 1 cut(s) 333
TaaI ACNGT 2 cut(s) 919, 1153
TaqI TCGA 3 cut(s) 238, 1177, 1276
TatI WGTACW 1 cut(s) 249
TauI GCSGC 2 cut(s) 647, 650
TscAI CASTG 2 cut(s) 432, 922
TseFI GTSAC 2 cut(s) 1585, 1648
TseI GCWGC 7 cut(s) 104, 1006, 1045, 1267, 1270, 1297, 1790
Tsp45I GTSAC 2 cut(s) 1585, 1648
TspDTI ATGAA 8 cut(s) 159, 247, 332, 753, 1192, 1266, 1441, 1492
TspRI CASTG 2 cut(s) 432, 922
VpaK11BI GGWCC 3 cut(s) 381, 589, 1289
XapI RAATTY 6 cut(s) 328, 446, 724, 991, 1199, 1592
XceI RCATGY 1 cut(s) 654
XmaJI CCTAGG 2 cut(s) 536, 668
XspI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.