Rw2G053960

Xyloglucan glycosyltransferase 4-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
81706448 .. 81708778
2331 bp
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UTR
Exon/CDS
Intron
Rw2G053960.1

Sequence Viewer

Length: 1980 bp
ATGGCTCCAAACAACTCAGTTGCAATCACAATCCAGAAGCCAAACAACTCTTTCTCAAAGGCAAAGTCTTTGGAGTCCTCTGTTTTCTTTGAGAAGCAGAAAGCAGCGAGCCCCAAGCAATTCACATGGGTTCTTCTTCTCAAAGTCAACAGAATCTTTGCTTGTCTTTCATGGCTTCCAATGGCATTCAGAAAACGCATTGCTTTATCGGATATGAGCGATGAGGAGCCGAGGAATCGAGGAAAGTTGTACAGATTCATCAAGGCTTTTCTTATGTTGTCAATTGTGGCTTTGGGAGTTGAAGTTATTGCTCATTACAAGAAATGGAATTTAAATCTGGTTCATCATCCATCTTGGGAAGTTCAGGGTCTGGTGCGGTGGTCCTATATGGCTTGGTTGTCTTTCAGAGTTGACTATATTGCACCAGTGGCCATCTTCCTCTCTAAATTCTGCATTGTTCTGTTCCTGATTCAGTCTCTTGATAGATTGGTTTTGTGTCTTGGATGTTTCTGGATCAAGTTCAAGAAGGTAAAGCCTAGGATTGAGCCAGATGCTTATGATGTTGAAGACCCTTCTAGCTTCCCAATGGTCCTTCTTCAGATTCCCATGTGCAATGAGAGAGAGGTGTACGAACAAGCCATTGCCGCCGCATGCCAGATGGATTGGCCTAGGGACAGACTTTTGATTCAAGTTTTGGACAACTCGGACGACATAGTTCTACAGAATTTAATCCAAGATGAAATCTCGGCATGGAATCAGAAAGGCATTAACATAATCTACAGGCACAGATTGATCAGAACTGGCTACAAAGCTGGGAATCTTAAATCGGCCATGGGATGTGAGTATGTCAAACACTACGAGTTTGTGGCAATTTTTGATGCTGATTTCACACCCAATCCTGATTTCCTTAAACTCACTGTTCCTCACTTCAAGGGAAATCCAGAATTAGGACTAGTCCAGGCTAGGTGGTCATTTGTGAACAAGGATGAGAATTTACTTACAAGGCTGCAAAACATCAACTTGTGCTTCCATTTTGAAGTGGAGCAGCAAGTTAATGGTGTCTTTCTCAATTTCTTCGGATTCAATGGAACTGCAGGAGTTTGGAGAATTAAGGCCCTGGAAGAATCAGGAGGTTGGCTAGAGAGAACAACAGTTGAAGACATGGACATTGCAGTTCGAGCACACTTGAATGGGTGGAAATTCATCTTCCTCAATGATGTAAAAGCCCTCTGTGAATTACCAGAGTCTTATGAAACTTATAAGAAGCAGCAGCATCGATGGCATTCAGGTCCGATGCAGCTCTTCAGATTATGCCTTCCTGCTATCTTAACTTCCAAGGTTGATATCTATATTCAAGAAGGCCAACTTAATATTTCTTTCTTTCTTTTGAGGAAGCTAATTCTTCCCTTTTACTCATTCACATTGTTCTGCATCATACTTCCATTGACCATGTTCATACCTGAGGCTGAATTACCTCTTTGGGTAATTTGCTATGTACCAATTTTCATGTCCTTCCTCAACATTCTACCATCCCCAAAATCTTTCCCTTTCCTAGTCCCATACCTTCTCTTTGAAAACACAATGTCCGTCACAAAATTCAATGCCATGGTCTCCGGCCTATTTCAGCTGGGAAGTTCTTATGAGTGGGTGGTGACAAAGAAGACCGGAAGATCATCTGAGTCAGATTTGTTAGCGTTTGCTGAAAGGGAATCGTCAAATGATGAGAAGATCCTAAGGAGGAACTCTGAGTCTGGTTTAGAATCGTTAAGTAAACTCAAGGAACAAGAAGTAGCAGCACCTCCCAAGAAAAAGAAGAAAAATGGGATTTATAGGAAGGAACTTGCTCTTTCTTTTCTGCTACTCACAGCCTCAGCAAGAAGTTTCCTATCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGCTTGTCATTTCTTGTTGTAGGTTTGGACTTAATAGGTGAGCAGATTAGCTAA

Protein Analysis

659

Amino Acids

76.01

Weight (kDa)

8.77

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 196 - 428 7e-11 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 201 - 349 5.8e-07 Glycosyl transferase family 2
Glyco_transf_21 PF13506 279 - 427 1.6e-06 Glycosyl transferase family 21
Glyco_trans_2_3 PF13632 289 - 499 5.9e-18 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
AciI CCGC 3 cut(s) 376, 645, 648
AclWI GGATC 2 cut(s) 521, 1723
AcoI YGGCCR 2 cut(s) 429, 828
AcsI RAATTY 6 cut(s) 328, 446, 724, 991, 1199, 1595
AcuI CTGAAG 2 cut(s) 581, 1288
AfaI GTAC 3 cut(s) 251, 629, 1497
AfiI CCNNNNNNNGG 1 cut(s) 947
AhlI ACTAGT 1 cut(s) 952
AjnI CCWGG 2 cut(s) 957, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AluBI AGCT 6 cut(s) 579, 812, 1300, 1396, 1627, 1977
AluI AGCT 6 cut(s) 579, 812, 1300, 1396, 1627, 1977
Alw21I GWGCWC 1 cut(s) 1183
Alw26I GTCTC 2 cut(s) 480, 1615
AlwI GGATC 2 cut(s) 521, 1723
AlwNI CAGNNNCTG 1 cut(s) 370
AoxI GGCC 6 cut(s) 429, 665, 828, 1113, 1360, 1615
ApeKI GCWGC 7 cut(s) 104, 1006, 1045, 1267, 1270, 1297, 1793
ApoI RAATTY 6 cut(s) 328, 446, 724, 991, 1199, 1595
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspA2I CCTAGG 2 cut(s) 536, 668
AspS9I GGNCC 4 cut(s) 381, 589, 1114, 1289
AsuHPI GGTGA 2 cut(s) 1663, 1976
AvaII GGWCC 3 cut(s) 381, 589, 1289
AvrII CCTAGG 2 cut(s) 536, 668
AxyI CCTNAGG 2 cut(s) 1461, 1733
BalI TGGCCA 1 cut(s) 431
BanII GRGCYC 1 cut(s) 113
BbsI GAAGAC 3 cut(s) 573, 1164, 1667
Bbv12I GWGCWC 1 cut(s) 1183
BbvCI CCTCAGC 1 cut(s) 1870
BbvI GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1805
BccI CCATC 5 cut(s) 358, 440, 652, 1272, 1537
BcgI CGANNNNNNTGC 2 cut(s) 1256, 1290
BciT130I CCWGG 2 cut(s) 959, 1118
BclI TGATCA 1 cut(s) 792
BcoDI GTCTC 2 cut(s) 480, 1615
BcuI ACTAGT 1 cut(s) 952
BfaI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1553
BfmI CTRYAG 3 cut(s) 719, 778, 1092
BisI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1794
BlnI CCTAGG 2 cut(s) 536, 668
BlsI GCNGC 9 cut(s) 106, 646, 649, 1008, 1047, 1269, 1272, 1299, 1795
Bme1390I CCNGG 2 cut(s) 959, 1118
Bme18I GGWCC 3 cut(s) 381, 589, 1289
BmgT120I GGNCC 4 cut(s) 381, 589, 1114, 1289
BmiI GGNNCC 2 cut(s) 6, 228
BmrFI CCNGG 2 cut(s) 959, 1118
BmsI GCATC 5 cut(s) 541, 868, 1282, 1284, 1440
BpiI GAAGAC 3 cut(s) 573, 1164, 1667
Bpu10I CCTNAGC 1 cut(s) 1870
BpuEI CTTGAG 1 cut(s) 1760
Bsa29I ATCGAT 1 cut(s) 1276
BsaI GGTCTC 1 cut(s) 1615
BsaJI CCNNGG 8 cut(s) 230, 536, 668, 831, 1116, 1335, 1605, 1924
BsaWI WCCGGW 1 cut(s) 1664
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 947
Bse1I ACTGG 2 cut(s) 425, 805
Bse21I CCTNAGG 2 cut(s) 1461, 1733
Bse3DI GCAATG 4 cut(s) 198, 619, 639, 1167
BseBI CCWGG 2 cut(s) 959, 1118
BseCI ATCGAT 1 cut(s) 1276
BseDI CCNNGG 8 cut(s) 230, 536, 668, 831, 1116, 1335, 1605, 1924
BseGI GGATG 5 cut(s) 346, 509, 842, 991, 1529
BseLI CCNNNNNNNGG 1 cut(s) 947
BseMI GCAATG 4 cut(s) 198, 619, 639, 1167
BseMII CTCAG 5 cut(s) 30, 1452, 1668, 1737, 1884
BseNI ACTGG 2 cut(s) 425, 805
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1805
BseYI CCCAGC 2 cut(s) 812, 1627
BshFI GGCC 6 cut(s) 431, 667, 830, 1115, 1362, 1617
BshVI ATCGAT 1 cut(s) 1276
BsiHKAI GWGCWC 1 cut(s) 1183
BsiSI CCGG 2 cut(s) 1614, 1665
BslFI GGGAC 2 cut(s) 686, 1541
BslI CCNNNNNNNGG 1 cut(s) 947
BsmAI GTCTC 2 cut(s) 480, 1615
BsmFI GGGAC 2 cut(s) 686, 1541
BsmI GAATGC 2 cut(s) 185, 1282
BsnI GGCC 6 cut(s) 431, 667, 830, 1115, 1362, 1617
Bso31I GGTCTC 1 cut(s) 1615
Bsp1286I GDGCHC 2 cut(s) 113, 1183
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 4 cut(s) 513, 792, 1670, 1728
Bsp19I CCATGG 2 cut(s) 831, 1605
BspACI CCGC 3 cut(s) 376, 645, 648
BspANI GGCC 6 cut(s) 431, 667, 830, 1115, 1362, 1617
BspCNI CTCAG 5 cut(s) 29, 1453, 1669, 1738, 1883
BspDI ATCGAT 1 cut(s) 1276
BspLI GGNNCC 2 cut(s) 6, 228
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 2 cut(s) 521, 1723
BspQI GCTCTTC 1 cut(s) 1307
BspTNI GGTCTC 1 cut(s) 1615
BsrDI GCAATG 4 cut(s) 198, 619, 639, 1167
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 2 cut(s) 425, 805
BssECI CCNNGG 8 cut(s) 230, 536, 668, 831, 1116, 1335, 1605, 1924
BssMI GATC 4 cut(s) 513, 792, 1670, 1728
BssT1I CCWWGG 6 cut(s) 536, 668, 831, 1335, 1605, 1924
Bst2UI CCWGG 2 cut(s) 959, 1118
Bst4CI ACNGT 2 cut(s) 919, 1153
Bst6I CTCTTC 1 cut(s) 1307
BstAUI TGTACA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 109, 652
BstDEI CTNAG 6 cut(s) 16, 1461, 1677, 1733, 1746, 1870
BstDSI CCRYGG 2 cut(s) 831, 1605
BstF5I GGATG 5 cut(s) 346, 509, 842, 991, 1529
BstKTI GATC 4 cut(s) 516, 795, 1673, 1731
BstMAI GTCTC 2 cut(s) 480, 1615
BstMBI GATC 4 cut(s) 513, 792, 1670, 1728
BstMWI GCNNNNNNNGC 4 cut(s) 428, 644, 1178, 1279
BstNI CCWGG 2 cut(s) 959, 1118
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 957, 1116
BstSFI CTRYAG 3 cut(s) 719, 778, 1092
BstV1I GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1805
BstV2I GAAGAC 3 cut(s) 573, 1164, 1667
BstX2I RGATCY 1 cut(s) 1728
BstYI RGATCY 1 cut(s) 1728
Bsu15I ATCGAT 1 cut(s) 1276
Bsu36I CCTNAGG 2 cut(s) 1461, 1733
BsuRI GGCC 6 cut(s) 431, 667, 830, 1115, 1362, 1617
BsuTUI ATCGAT 1 cut(s) 1276
BtgI CCRYGG 2 cut(s) 831, 1605
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 5 cut(s) 346, 509, 842, 991, 1529
BtsIMutI CAGTG 2 cut(s) 432, 915
Cac8I GCNNGC 2 cut(s) 109, 652
CaiI CAGNNNCTG 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 381, 589, 1114, 1289
ClaI ATCGAT 1 cut(s) 1276
Csp6I GTAC 3 cut(s) 250, 628, 1496
CviQI GTAC 3 cut(s) 250, 628, 1496
DdeI CTNAG 6 cut(s) 16, 1461, 1677, 1733, 1746, 1870
DpnI GATC 4 cut(s) 515, 794, 1672, 1730
DpnII GATC 4 cut(s) 513, 792, 1670, 1728
DraI TTTAAA 1 cut(s) 333
EaeI YGGCCR 2 cut(s) 429, 828
Eam1104I CTCTTC 1 cut(s) 1307
EarI CTCTTC 1 cut(s) 1307
Eco130I CCWWGG 6 cut(s) 536, 668, 831, 1335, 1605, 1924
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 1615
Eco32I GATATC 1 cut(s) 1345
Eco47I GGWCC 3 cut(s) 381, 589, 1289
Eco57I CTGAAG 2 cut(s) 581, 1288
Eco81I CCTNAGG 2 cut(s) 1461, 1733
EcoO109I RGGNCCY 1 cut(s) 1114
EcoRII CCWGG 2 cut(s) 957, 1116
EcoRV GATATC 1 cut(s) 1345
EcoT14I CCWWGG 6 cut(s) 536, 668, 831, 1335, 1605, 1924
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 6 cut(s) 536, 668, 831, 1335, 1605, 1924
FalI AAGNNNNNCTT 2 cut(s) 1350, 1382
FaqI GGGAC 2 cut(s) 686, 1541
FbaI TGATCA 1 cut(s) 792
Fnu4HI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1794
FokI GGATG 5 cut(s) 333, 516, 849, 998, 1516
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1794
FspBI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1553
GluI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1794
GsaI CCCAGC 2 cut(s) 816, 1631
HaeIII GGCC 6 cut(s) 431, 667, 830, 1115, 1362, 1617
HapII CCGG 2 cut(s) 1614, 1665
HincII GTYRAC 2 cut(s) 148, 412
HindII GTYRAC 2 cut(s) 148, 412
HpaII CCGG 2 cut(s) 1614, 1665
HphI GGTGA 2 cut(s) 1663, 1976
Hpy166II GTNNAC 6 cut(s) 148, 412, 628, 979, 1772, 1903
Hpy188III TCNNGA 9 cut(s) 34, 466, 479, 511, 523, 899, 941, 1128, 1355
Hpy8I GTNNAC 6 cut(s) 148, 412, 628, 979, 1772, 1903
HpyAV CCTTC 8 cut(s) 520, 582, 602, 1325, 1352, 1522, 1574, 1828
HpyCH4III ACNGT 2 cut(s) 919, 1153
HpyCH4V TGCA 9 cut(s) 23, 422, 453, 612, 1009, 1094, 1172, 1297, 1431
HpyF10VI GCNNNNNNNGC 4 cut(s) 428, 644, 1178, 1279
HpyF3I CTNAG 6 cut(s) 16, 1461, 1677, 1733, 1746, 1870
Ksp22I TGATCA 1 cut(s) 792
Kzo9I GATC 4 cut(s) 513, 792, 1670, 1728
LguI GCTCTTC 1 cut(s) 1307
LmnI GCTCC 3 cut(s) 10, 226, 1042
Lsp1109I GCAGC 7 cut(s) 116, 993, 1057, 1279, 1282, 1309, 1805
LweI GCATC 5 cut(s) 541, 868, 1282, 1284, 1440
MaeI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1553
MaeIII GTNAC 2 cut(s) 1588, 1651
MalI GATC 4 cut(s) 515, 794, 1672, 1730
MboI GATC 4 cut(s) 513, 792, 1670, 1728
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 1 cut(s) 1728
MhlI GDGCHC 2 cut(s) 113, 1183
MlsI TGGCCA 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 4 cut(s) 83, 1253, 1688, 1757
Mox20I TGGCCA 1 cut(s) 431
MscI TGGCCA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 1188
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 1627
MspI CCGG 2 cut(s) 1614, 1665
MspR9I CCNGG 2 cut(s) 959, 1118
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 2 cut(s) 185, 1282
MvaI CCWGG 2 cut(s) 959, 1118
MwoI GCNNNNNNNGC 4 cut(s) 428, 644, 1178, 1279
NcoI CCATGG 2 cut(s) 831, 1605
NdeII GATC 4 cut(s) 513, 792, 1670, 1728
NlaIV GGNNCC 2 cut(s) 6, 228
NmeAIII GCCGAG 2 cut(s) 255, 725
NmuCI GTSAC 2 cut(s) 1588, 1651
NspI RCATGY 1 cut(s) 654
PaeI GCATGC 1 cut(s) 654
PciSI GCTCTTC 1 cut(s) 1307
PctI GAATGC 2 cut(s) 185, 1282
PkrI GCNGC 9 cut(s) 106, 646, 649, 1008, 1047, 1269, 1272, 1299, 1795
PleI GAGTC 4 cut(s) 82, 1252, 1687, 1756
PpsI GAGTC 4 cut(s) 82, 1252, 1687, 1756
PsiI TTATAA 1 cut(s) 1260
Psp6I CCWGG 2 cut(s) 957, 1116
PspFI CCCAGC 2 cut(s) 812, 1627
PspGI CCWGG 2 cut(s) 957, 1116
PspN4I GGNNCC 2 cut(s) 6, 228
PspPI GGNCC 4 cut(s) 381, 589, 1114, 1289
PstI CTGCAG 1 cut(s) 1096
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 1728
PvuII CAGCTG 1 cut(s) 1627
RsaI GTAC 3 cut(s) 251, 629, 1497
RsaNI GTAC 3 cut(s) 250, 628, 1496
RseI CAYNNNNRTG 1 cut(s) 1188
SapI GCTCTTC 1 cut(s) 1307
SatI GCNGC 9 cut(s) 105, 645, 648, 1007, 1046, 1268, 1271, 1298, 1794
Sau3AI GATC 4 cut(s) 513, 792, 1670, 1728
Sau96I GGNCC 4 cut(s) 381, 589, 1114, 1289
SchI GAGTC 4 cut(s) 83, 1253, 1688, 1757
ScrFI CCNGG 2 cut(s) 959, 1118
SduI GDGCHC 2 cut(s) 113, 1183
SfaNI GCATC 5 cut(s) 541, 868, 1282, 1284, 1440
SfcI CTRYAG 3 cut(s) 719, 778, 1092
SinI GGWCC 3 cut(s) 381, 589, 1289
SmiI ATTTAAAT 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 1188
SmlI CTYRAG 1 cut(s) 1775
SmoI CTYRAG 1 cut(s) 1775
SpeI ACTAGT 1 cut(s) 952
SphI GCATGC 1 cut(s) 654
SsiI CCGC 3 cut(s) 376, 645, 648
SspI AATATT 1 cut(s) 1372
SspMI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1553
StyD4I CCNGG 2 cut(s) 957, 1116
StyI CCWWGG 6 cut(s) 536, 668, 831, 1335, 1605, 1924
SwaI ATTTAAAT 1 cut(s) 333
TaaI ACNGT 2 cut(s) 919, 1153
TaqI TCGA 3 cut(s) 238, 1177, 1276
TatI WGTACW 1 cut(s) 249
TauI GCSGC 2 cut(s) 647, 650
TscAI CASTG 2 cut(s) 432, 922
TseFI GTSAC 2 cut(s) 1588, 1651
TseI GCWGC 7 cut(s) 104, 1006, 1045, 1267, 1270, 1297, 1793
Tsp45I GTSAC 2 cut(s) 1588, 1651
TspDTI ATGAA 8 cut(s) 159, 247, 332, 753, 1192, 1266, 1444, 1495
TspGWI ACGGA 1 cut(s) 1576
TspRI CASTG 2 cut(s) 432, 922
VpaK11BI GGWCC 3 cut(s) 381, 589, 1289
XapI RAATTY 6 cut(s) 328, 446, 724, 991, 1199, 1595
XceI RCATGY 1 cut(s) 654
XmaJI CCTAGG 2 cut(s) 536, 668
XspI CTAG 7 cut(s) 537, 576, 669, 953, 963, 1139, 1553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.