Rorug02G0577900

Xyloglucan glycosyltransferase 4-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
70170154 .. 70175236
5083 bp
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UTR
Exon/CDS
Intron
Rorug02G0577900.1

Sequence Viewer

Length: 1578 bp
ATGCAGCTTCACTTCTCGCCGAGCATGAGAAGCATAACGATCTCGAGCAGCAATGGGTTTATTGACTTGATGAAGATCAAGGTCGCAGCTCGTCACATCTCTTATAGAACAGTCTTCCACACCATTCTAGTCCTCGCTTTCTTGTTGCCCTTTGTCTTCATTCTCACTGCTGTTGTTACTCTTGAAGATTGTTTAGGTAGGCGCTTGGGACCAAGGCTTCTTGGTAGGGTTGATGATTCAGGGAGACTGGTTAGAGACTTTTACAAGATTCTCAACCAAGTGAACACTGAAGAAATCCCAGCTGGTCTAAAGCTGCCAAATTCATTTAATAAACTTGTTTCTGAGATGAAGAACAACCAGTATGATGCAAGGACCTTTGCTTTCATGCTAAGAGCCATGATGGAGAATTTTGAAAAGGAAATCAGAGAGTCTAAGTTTTCAGAGCTGATGAACAAACACTTTGCGGCAAGTTCTGTACCCAAAGGCATCCACTGTCTGTCTTTGCGTTTGACTGATGAATATTCATCCAATGCTCATGCCAGGAAGCAATTGCCTCCTCCAGAGTTACTTCCGTTACTCTCTGACAACTCTTACCACCACTTTATCCTATCAACTGATAACATCTTGGCTGCTTCAGTTGTTGTTGCATCTGCTGTCCAGACGTCTCTCAAACCTGAAAAGATAGTCTTCCATGTCATTACTGACAAGAAAACTTACGCTGGCATGCACTCATGGTTTGCACTAAACCCTGTCTCCCCTGCTATTGTTGAAGTGAAAGGTGTCCACCAGTTTGATTGGTTAACAAGAGAAAATGTTCCAGTCCTTGAAGCTGTTGAAAATCAAAATGGGATCAGGGATTATTACCATGGGAATCATCTTGCTGGGGCCAATCTCAGTGCTACAACTCCACGAACTTTCGCATCTAAATTGCAGGCTAGAAGTCCCAAATACATATCCATACTCAACCATCTTCGCATATATTTACCTGAGCTCTTCCCGAATCTTGACAAGGTGGTTTTCCTAGATGATGATGTTGTGATTCAGCGAGATTTATCGTCACTTTGGGACATTGACCTTGGGGGAAAGGTCAATGGAGCTGTTGAAACTTGTAAAGGTGAAGATGAGTGGGTAATGTCCAAGCGATTCAGGAACTACTTCAATTTTTCCCATCCCCTCGTAGCAAAGAATTTGGACCCTGAAGAATGTGCATGGGCTTATGGGATGAATATCTTTGATCTTAGTGCCTGGAGAAAGACAAATATAAGAGAGACTTATCATTCCTGGCTGAAAGAGAATCTGAAGTCAAACCTCACGATATGGAAGCTTGGAACCCTACCACCAGCTTTAATTGCATTTAGAGGTCATGTTCACTCAATTGATCCATCGTGGCACATGCTTGGATTGGGTTATCAAAATAACACCAATATTGAAAGGGTTGAGAAGGCTGCAGTTATCCACTATAATGGTCAGTCAAAACCCTGGTTGCAGATTGGCTTTGATCATCTTCGGCCATTCTGGACCAAATACGTCAATTACTCCAATGATTTTGTTAGGAACTGCCACATCTTGGAGTCATAG

Protein Analysis

525

Amino Acids

60.09

Weight (kDa)

8.83

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 165 - 497 6.8e-77 Glycosyl transferase family 8
Glyco_transf_24 PF18404 313 - 378 1.8e-06 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 665
AccB7I CCANNNNNTGG 1 cut(s) 1567
AciI CCGC 1 cut(s) 464
AclWI GGATC 2 cut(s) 857, 1373
AcoI YGGCCR 1 cut(s) 1508
AcsI RAATTY 3 cut(s) 319, 406, 1186
AcuI CTGAAG 4 cut(s) 309, 618, 1218, 1319
AcyI GRCGYC 1 cut(s) 662
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 1567
AgsI TTSAA 8 cut(s) 185, 413, 770, 827, 836, 1103, 1159, 1430
AjnI CCWGG 4 cut(s) 539, 1244, 1280, 1478
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 5 cut(s) 238, 249, 669, 757, 1262
AlwI GGATC 2 cut(s) 857, 1373
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 2 cut(s) 885, 1508
ApeKI GCWGC 6 cut(s) 4, 48, 86, 313, 629, 1445
ApoI RAATTY 3 cut(s) 319, 406, 1186
Asp700I GAANNNNTTC 2 cut(s) 813, 1154
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 5 cut(s) 209, 372, 885, 1192, 1518
AsuHPI GGTGA 1 cut(s) 1127
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 4 cut(s) 209, 372, 1192, 1518
BanII GRGCYC 1 cut(s) 993
BbsI GAAGAC 3 cut(s) 106, 148, 679
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 6 cut(s) 16, 60, 98, 300, 616, 1432
BccI CCATC 4 cut(s) 394, 975, 1176, 1390
BciT130I CCWGG 4 cut(s) 541, 1246, 1282, 1480
BclI TGATCA 1 cut(s) 1498
BcoDI GTCTC 5 cut(s) 238, 249, 669, 757, 1262
BfaI CTAG 3 cut(s) 128, 936, 1022
BfmI CTRYAG 1 cut(s) 1446
BfoI RGCGCY 1 cut(s) 205
BisI GCNGC 7 cut(s) 5, 49, 87, 314, 465, 630, 1446
BlsI GCNGC 7 cut(s) 6, 50, 88, 315, 466, 631, 1447
Bme1390I CCNGG 4 cut(s) 541, 1246, 1282, 1480
Bme18I GGWCC 4 cut(s) 209, 372, 1192, 1518
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 5 cut(s) 209, 372, 885, 1192, 1518
BmiI GGNNCC 4 cut(s) 210, 886, 1194, 1330
BmrFI CCNGG 4 cut(s) 541, 1246, 1282, 1480
BmsI GCATC 4 cut(s) 355, 495, 656, 929
BpiI GAAGAC 3 cut(s) 106, 148, 679
BpmI CTGGAG 2 cut(s) 543, 1267
Bpu10I CCTNAGC 1 cut(s) 987
BsaBI GATNNNNATC 2 cut(s) 74, 1226
BsaHI GRCGYC 1 cut(s) 662
BsaJI CCNNGG 4 cut(s) 212, 865, 1075, 1478
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 1567
Bse1I ACTGG 4 cut(s) 252, 358, 787, 818
Bse3DI GCAATG 1 cut(s) 58
Bse8I GATNNNNATC 2 cut(s) 74, 1226
BseBI CCWGG 4 cut(s) 541, 1246, 1282, 1480
BseDI CCNNGG 4 cut(s) 212, 865, 1075, 1478
BseGI GGATG 4 cut(s) 486, 524, 1168, 1227
BseJI GATNNNNATC 2 cut(s) 74, 1226
BseLI CCNNNNNNNGG 1 cut(s) 1567
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 333, 907, 978
BseNI ACTGG 4 cut(s) 252, 358, 787, 818
BseRI GAGGAG 1 cut(s) 546
BseXI GCAGC 6 cut(s) 16, 60, 98, 300, 616, 1432
BseYI CCCAGC 2 cut(s) 298, 881
BshFI GGCC 2 cut(s) 887, 1510
BsiHKAI GWGCWC 1 cut(s) 993
BsiHKCI CYCGRG 1 cut(s) 43
BslFI GGGAC 3 cut(s) 222, 927, 1079
BslI CCNNNNNNNGG 1 cut(s) 1567
BsmAI GTCTC 5 cut(s) 238, 249, 669, 757, 1262
BsmBI CGTCTC 1 cut(s) 669
BsmFI GGGAC 3 cut(s) 222, 927, 1079
BsnI GGCC 2 cut(s) 887, 1510
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 993
Bsp143I GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
Bsp19I CCATGG 1 cut(s) 865
BspACI CCGC 1 cut(s) 464
BspANI GGCC 2 cut(s) 887, 1510
BspCNI CTCAG 3 cut(s) 334, 906, 979
BspLI GGNNCC 4 cut(s) 210, 886, 1194, 1330
BspMAI CTGCAG 1 cut(s) 1450
BspPI GGATC 2 cut(s) 857, 1373
BspQI GCTCTTC 1 cut(s) 998
BsrDI GCAATG 1 cut(s) 58
BsrI ACTGG 4 cut(s) 252, 358, 787, 818
BssECI CCNNGG 4 cut(s) 212, 865, 1075, 1478
BssMI GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
BssNI GRCGYC 1 cut(s) 662
BssT1I CCWWGG 3 cut(s) 212, 865, 1075
Bst2UI CCWGG 4 cut(s) 541, 1246, 1282, 1480
Bst4CI ACNGT 2 cut(s) 112, 494
Bst6I CTCTTC 1 cut(s) 998
BstACI GRCGYC 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 721, 725, 933
BstDEI CTNAG 6 cut(s) 342, 389, 432, 893, 987, 1238
BstDSI CCRYGG 1 cut(s) 865
BstF5I GGATG 4 cut(s) 486, 524, 1168, 1227
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 6 cut(s) 42, 78, 852, 1237, 1381, 1501
BstMAI GTCTC 5 cut(s) 238, 249, 669, 757, 1262
BstMBI GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
BstMWI GCNNNNNNNGC 2 cut(s) 30, 1349
BstNI CCWGG 4 cut(s) 541, 1246, 1282, 1480
BstNSI RCATGY 2 cut(s) 727, 1396
BstSCI CCNGG 4 cut(s) 539, 1244, 1280, 1478
BstSFI CTRYAG 1 cut(s) 1446
BstV1I GCAGC 6 cut(s) 16, 60, 98, 300, 616, 1432
BstV2I GAAGAC 3 cut(s) 106, 148, 679
BstXI CCANNNNNNTGG 1 cut(s) 1463
BsuRI GGCC 2 cut(s) 887, 1510
BtgI CCRYGG 1 cut(s) 865
BtsCI GGATG 4 cut(s) 486, 524, 1168, 1227
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 4 cut(s) 165, 285, 490, 901
Cac8I GCNNGC 3 cut(s) 721, 725, 933
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 5 cut(s) 209, 372, 885, 1192, 1518
Csp6I GTAC 1 cut(s) 476
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 6 cut(s) 342, 389, 432, 893, 987, 1238
DpnI GATC 6 cut(s) 41, 77, 851, 1236, 1380, 1500
DpnII GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
EaeI YGGCCR 1 cut(s) 1508
Eam1104I CTCTTC 1 cut(s) 998
EarI CTCTTC 1 cut(s) 998
Ecl136II GAGCTC 1 cut(s) 991
Eco130I CCWWGG 3 cut(s) 212, 865, 1075
Eco24I GRGCYC 1 cut(s) 993
Eco47I GGWCC 4 cut(s) 209, 372, 1192, 1518
Eco53kI GAGCTC 1 cut(s) 991
Eco57I CTGAAG 4 cut(s) 309, 618, 1218, 1319
Eco88I CYCGRG 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 991
EcoO109I RGGNCCY 1 cut(s) 372
EcoRII CCWGG 4 cut(s) 539, 1244, 1280, 1478
EcoT14I CCWWGG 3 cut(s) 212, 865, 1075
EcoT38I GRGCYC 1 cut(s) 993
ErhI CCWWGG 3 cut(s) 212, 865, 1075
Esp3I CGTCTC 1 cut(s) 669
FalI AAGNNNNNCTT 4 cut(s) 671, 703, 1255, 1287
FaqI GGGAC 3 cut(s) 222, 927, 1079
FbaI TGATCA 1 cut(s) 1498
Fnu4HI GCNGC 7 cut(s) 5, 49, 87, 314, 465, 630, 1446
FokI GGATG 4 cut(s) 473, 511, 1155, 1234
FriOI GRGCYC 1 cut(s) 993
Fsp4HI GCNGC 7 cut(s) 5, 49, 87, 314, 465, 630, 1446
FspBI CTAG 3 cut(s) 128, 936, 1022
GlaI GCGC 1 cut(s) 203
GluI GCNGC 7 cut(s) 5, 49, 87, 314, 465, 630, 1446
GsaI CCCAGC 2 cut(s) 302, 885
GsuI CTGGAG 2 cut(s) 543, 1267
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 2 cut(s) 887, 1510
HhaI GCGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 662
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HindIII AAGCTT 1 cut(s) 1322
HinfI GANTC 9 cut(s) 236, 268, 428, 871, 1000, 1039, 1143, 1294, 1571
HpaI GTTAAC 1 cut(s) 801
HphI GGTGA 1 cut(s) 1127
Hpy166II GTNNAC 4 cut(s) 283, 784, 801, 1369
Hpy188I TCNGA 5 cut(s) 343, 425, 442, 583, 1299
Hpy188III TCNNGA 9 cut(s) 43, 182, 560, 658, 997, 1004, 1147, 1312, 1516
Hpy8I GTNNAC 4 cut(s) 283, 784, 801, 1369
HpyAV CCTTC 1 cut(s) 1435
HpyCH4III ACNGT 2 cut(s) 112, 494
HpyCH4IV ACGT 2 cut(s) 662, 1527
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 1349
HpyF3I CTNAG 6 cut(s) 342, 389, 432, 893, 987, 1238
HpySE526I ACGT 2 cut(s) 662, 1527
Hsp92I GRCGYC 1 cut(s) 662
HspAI GCGC 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 1498
KspAI GTTAAC 1 cut(s) 801
Kzo9I GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
LguI GCTCTTC 1 cut(s) 998
LmnI GCTCC 1 cut(s) 1094
Lsp1109I GCAGC 6 cut(s) 16, 60, 98, 300, 616, 1432
LweI GCATC 4 cut(s) 355, 495, 656, 929
MaeI CTAG 3 cut(s) 128, 936, 1022
MaeII ACGT 2 cut(s) 662, 1527
MaeIII GTNAC 5 cut(s) 92, 175, 564, 573, 1056
MalI GATC 6 cut(s) 41, 77, 851, 1236, 1380, 1500
MboI GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
MfeI CAATTG 2 cut(s) 548, 1374
MhlI GDGCHC 1 cut(s) 993
MluCI AATT 9 cut(s) 319, 406, 548, 926, 1159, 1186, 1347, 1374, 1531
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 6 cut(s) 143, 564, 567, 1184, 1319, 1352
MroXI GAANNNNTTC 2 cut(s) 813, 1154
MseI TTAA 3 cut(s) 327, 800, 1346
MslI CAYNNNNRTG 1 cut(s) 1461
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 4 cut(s) 541, 1246, 1282, 1480
MunI CAATTG 2 cut(s) 548, 1374
MvaI CCWGG 4 cut(s) 541, 1246, 1282, 1480
MwoI GCNNNNNNNGC 2 cut(s) 30, 1349
NcoI CCATGG 1 cut(s) 865
NdeII GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
NlaIV GGNNCC 4 cut(s) 210, 886, 1194, 1330
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 92, 1056
NspI RCATGY 2 cut(s) 727, 1396
PaeI GCATGC 1 cut(s) 727
PaeR7I CTCGAG 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 998
PdmI GAANNNNTTC 2 cut(s) 813, 1154
PfeI GAWTC 7 cut(s) 236, 268, 871, 1000, 1039, 1143, 1294
PflMI CCANNNNNTGG 1 cut(s) 1567
PkrI GCNGC 7 cut(s) 6, 50, 88, 315, 466, 631, 1447
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PpuMI RGGWCCY 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 993
Psp5II RGGWCCY 1 cut(s) 372
Psp6I CCWGG 4 cut(s) 539, 1244, 1280, 1478
PspFI CCCAGC 2 cut(s) 298, 881
PspGI CCWGG 4 cut(s) 539, 1244, 1280, 1478
PspN4I GGNNCC 4 cut(s) 210, 886, 1194, 1330
PspPI GGNCC 5 cut(s) 209, 372, 885, 1192, 1518
PspPPI RGGWCCY 1 cut(s) 372
PstI CTGCAG 1 cut(s) 1450
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
RseI CAYNNNNRTG 1 cut(s) 1461
SacI GAGCTC 1 cut(s) 993
SapI GCTCTTC 1 cut(s) 998
SaqAI TTAA 3 cut(s) 327, 800, 1346
SatI GCNGC 7 cut(s) 5, 49, 87, 314, 465, 630, 1446
Sau3AI GATC 6 cut(s) 39, 75, 849, 1234, 1378, 1498
Sau96I GGNCC 5 cut(s) 209, 372, 885, 1192, 1518
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 4 cut(s) 541, 1246, 1282, 1480
SduI GDGCHC 1 cut(s) 993
SfaNI GCATC 4 cut(s) 355, 495, 656, 929
SfcI CTRYAG 1 cut(s) 1446
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 4 cut(s) 209, 372, 1192, 1518
SlaI CTCGAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 1461
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SphI GCATGC 1 cut(s) 727
Sse9I AATT 9 cut(s) 319, 406, 548, 926, 1159, 1186, 1347, 1374, 1531
SsiI CCGC 1 cut(s) 464
SspI AATATT 2 cut(s) 521, 1426
SspMI CTAG 3 cut(s) 128, 936, 1022
SstI GAGCTC 1 cut(s) 993
StyD4I CCNGG 4 cut(s) 539, 1244, 1280, 1478
StyI CCWWGG 3 cut(s) 212, 865, 1075
TaaI ACNGT 2 cut(s) 112, 494
TaiI ACGT 2 cut(s) 665, 1530
TaqI TCGA 1 cut(s) 44
TasI AATT 9 cut(s) 319, 406, 548, 926, 1159, 1186, 1347, 1374, 1531
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 7 cut(s) 236, 268, 871, 1000, 1039, 1143, 1294
Tru1I TTAA 3 cut(s) 327, 800, 1346
Tru9I TTAA 3 cut(s) 327, 800, 1346
TscAI CASTG 4 cut(s) 172, 292, 497, 901
TseFI GTSAC 2 cut(s) 92, 1056
TseI GCWGC 6 cut(s) 4, 48, 86, 313, 629, 1445
Tsp45I GTSAC 2 cut(s) 92, 1056
TspDTI ATGAA 9 cut(s) 86, 148, 312, 362, 373, 464, 513, 531, 1238
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 4 cut(s) 172, 292, 497, 901
Van91I CCANNNNNTGG 1 cut(s) 1567
VpaK11BI GGWCC 4 cut(s) 209, 372, 1192, 1518
XapI RAATTY 3 cut(s) 319, 406, 1186
XceI RCATGY 2 cut(s) 727, 1396
XhoI CTCGAG 1 cut(s) 43
XmnI GAANNNNTTC 2 cut(s) 813, 1154
XspI CTAG 3 cut(s) 128, 936, 1022
ZraI GACGTC 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.