Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28690 |
| fragaria_vesca | FvH4_5g29510 |
| malus_domestica | MD10G1283700.v1.1 |
| prunus_persica | Prupe.4G058100_v2.0.a1 |
| pyrus_communis | pycom05g28160 pycom10g23660 |
| rosa_chinensis | RchiOBHm_Chr5g0010161 |
| rosa_laevigata | RLG00000031727 |
| rosa_roxburghii | Rroxscaffold_1G00066030 |
| rosa_rugosa | Rorug04G0449500 |
| rosa_samantha | Rh5AG080400 Rh5BG074900 Rh5CG088700 Rh5DG075900 |
| rosa_wichuraiana | Rw5G007440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 327 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1176 |
| AccI | GTMKAC | 1 cut(s) | 425 |
| AccII | CGCG | 3 cut(s) | 283, 357, 1281 |
| AccIII | TCCGGA | 1 cut(s) | 1432 |
| AciI | CCGC | 4 cut(s) | 92, 264, 357, 1482 |
| AcoI | YGGCCR | 3 cut(s) | 175, 886, 1442 |
| AcsI | RAATTY | 2 cut(s) | 814, 999 |
| AcuI | CTGAAG | 1 cut(s) | 708 |
| AfaI | GTAC | 3 cut(s) | 18, 1372, 1570 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 173, 1347, 1560 |
| AflIII | ACRYGT | 1 cut(s) | 960 |
| AjnI | CCWGG | 1 cut(s) | 1444 |
| AluBI | AGCT | 7 cut(s) | 99, 857, 1093, 1309, 1406, 1510, 1560 |
| AluI | AGCT | 7 cut(s) | 99, 857, 1093, 1309, 1406, 1510, 1560 |
| Alw21I | GWGCWC | 2 cut(s) | 952, 1095 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1484 |
| Aor13HI | TCCGGA | 1 cut(s) | 1432 |
| AoxI | GGCC | 5 cut(s) | 129, 175, 886, 1192, 1442 |
| ApeKI | GCWGC | 7 cut(s) | 142, 470, 872, 1352, 1406, 1478, 1557 |
| ApoI | RAATTY | 2 cut(s) | 814, 999 |
| AspLEI | GCGC | 4 cut(s) | 283, 285, 1281, 1283 |
| AspS9I | GGNCC | 1 cut(s) | 1192 |
| AsuC2I | CCSGG | 1 cut(s) | 655 |
| AsuHPI | GGTGA | 4 cut(s) | 39, 419, 1394, 1540 |
| BalI | TGGCCA | 2 cut(s) | 177, 888 |
| BanII | GRGCYC | 1 cut(s) | 1095 |
| BbsI | GAAGAC | 1 cut(s) | 920 |
| Bbv12I | GWGCWC | 2 cut(s) | 952, 1095 |
| BbvI | GCAGC | 7 cut(s) | 154, 482, 884, 1339, 1393, 1490, 1569 |
| BccI | CCATC | 3 cut(s) | 413, 1046, 1387 |
| BciT130I | CCWGG | 1 cut(s) | 1446 |
| BcnI | CCSGG | 1 cut(s) | 655 |
| BfaI | CTAG | 1 cut(s) | 843 |
| BfmI | CTRYAG | 2 cut(s) | 140, 1555 |
| BisI | GCNGC | 8 cut(s) | 143, 471, 873, 1353, 1407, 1479, 1482, 1558 |
| BlsI | GCNGC | 8 cut(s) | 144, 472, 874, 1354, 1408, 1480, 1483, 1559 |
| BmcAI | AGTACT | 2 cut(s) | 18, 1372 |
| Bme1390I | CCNGG | 2 cut(s) | 655, 1446 |
| BmgT120I | GGNCC | 1 cut(s) | 1192 |
| BmrFI | CCNGG | 2 cut(s) | 655, 1446 |
| BmsI | GCATC | 4 cut(s) | 673, 979, 1303, 1311 |
| BoxI | GACNNNNGTC | 1 cut(s) | 68 |
| BpiI | GAAGAC | 1 cut(s) | 920 |
| BpuEI | CTTGAG | 1 cut(s) | 1109 |
| BpuMI | CCSGG | 1 cut(s) | 655 |
| Bsa29I | ATCGAT | 2 cut(s) | 644, 1050 |
| BsaJI | CCNNGG | 3 cut(s) | 172, 479, 1410 |
| BsaWI | WCCGGW | 1 cut(s) | 1432 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 173, 1347, 1560 |
| Bse1I | ACTGG | 2 cut(s) | 83, 211 |
| Bse3DI | GCAATG | 2 cut(s) | 744, 1320 |
| BseAI | TCCGGA | 1 cut(s) | 1432 |
| BseBI | CCWGG | 1 cut(s) | 1446 |
| BseCI | ATCGAT | 2 cut(s) | 644, 1050 |
| BseDI | CCNNGG | 3 cut(s) | 172, 479, 1410 |
| BseGI | GGATG | 2 cut(s) | 994, 1326 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 173, 1347, 1560 |
| BseMI | GCAATG | 2 cut(s) | 744, 1320 |
| BseMII | CTCAG | 2 cut(s) | 1162, 1317 |
| BseNI | ACTGG | 2 cut(s) | 83, 211 |
| BsePI | GCGCGC | 2 cut(s) | 281, 1279 |
| BseXI | GCAGC | 7 cut(s) | 154, 482, 884, 1339, 1393, 1490, 1569 |
| BseYI | CCCAGC | 2 cut(s) | 1484, 1560 |
| BsgI | GTGCAG | 2 cut(s) | 236, 291 |
| Bsh1236I | CGCG | 3 cut(s) | 283, 357, 1281 |
| BshFI | GGCC | 5 cut(s) | 131, 177, 888, 1194, 1444 |
| BshVI | ATCGAT | 2 cut(s) | 644, 1050 |
| BsiHKAI | GWGCWC | 2 cut(s) | 952, 1095 |
| BsiSI | CCGG | 2 cut(s) | 654, 1433 |
| BslFI | GGGAC | 3 cut(s) | 56, 1235, 1508 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 173, 1347, 1560 |
| BsmFI | GGGAC | 3 cut(s) | 56, 1235, 1508 |
| BsmI | GAATGC | 1 cut(s) | 1460 |
| BsnI | GGCC | 5 cut(s) | 131, 177, 888, 1194, 1444 |
| Bsp1286I | GDGCHC | 2 cut(s) | 952, 1095 |
| Bsp13I | TCCGGA | 1 cut(s) | 1432 |
| Bsp143I | GATC | 3 cut(s) | 779, 1047, 1267 |
| Bsp19I | CCATGG | 2 cut(s) | 172, 479 |
| BspACI | CCGC | 4 cut(s) | 92, 264, 357, 1482 |
| BspANI | GGCC | 5 cut(s) | 131, 177, 888, 1194, 1444 |
| BspCNI | CTCAG | 2 cut(s) | 1161, 1318 |
| BspDI | ATCGAT | 2 cut(s) | 644, 1050 |
| BspEI | TCCGGA | 1 cut(s) | 1432 |
| BspFNI | CGCG | 3 cut(s) | 283, 357, 1281 |
| BspMAI | CTGCAG | 2 cut(s) | 144, 1559 |
| BspQI | GCTCTTC | 1 cut(s) | 1362 |
| BsrDI | GCAATG | 2 cut(s) | 744, 1320 |
| BsrI | ACTGG | 2 cut(s) | 83, 211 |
| BssECI | CCNNGG | 3 cut(s) | 172, 479, 1410 |
| BssHII | GCGCGC | 2 cut(s) | 281, 1279 |
| BssMI | GATC | 3 cut(s) | 779, 1047, 1267 |
| BssNAI | GTATAC | 1 cut(s) | 426 |
| BssT1I | CCWWGG | 3 cut(s) | 172, 479, 1410 |
| Bst1107I | GTATAC | 1 cut(s) | 426 |
| Bst2UI | CCWGG | 1 cut(s) | 1446 |
| Bst4CI | ACNGT | 4 cut(s) | 33, 550, 601, 709 |
| Bst6I | CTCTTC | 2 cut(s) | 139, 1362 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1457 |
| BstC8I | GCNNGC | 9 cut(s) | 283, 306, 501, 859, 890, 1258, 1281, 1311, 1555 |
| BstDEI | CTNAG | 4 cut(s) | 1148, 1326, 1361, 1511 |
| BstDSI | CCRYGG | 2 cut(s) | 172, 479 |
| BstF5I | GGATG | 2 cut(s) | 994, 1326 |
| BstFNI | CGCG | 3 cut(s) | 283, 357, 1281 |
| BstHHI | GCGC | 4 cut(s) | 283, 285, 1281, 1283 |
| BstKTI | GATC | 3 cut(s) | 782, 1050, 1270 |
| BstMBI | GATC | 3 cut(s) | 779, 1047, 1267 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 250, 467, 854, 1330, 1403, 1457 |
| BstNI | CCWGG | 1 cut(s) | 1446 |
| BstNSI | RCATGY | 5 cut(s) | 503, 805, 964, 1015, 1175 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 68 |
| BstSCI | CCNGG | 2 cut(s) | 653, 1444 |
| BstSFI | CTRYAG | 2 cut(s) | 140, 1555 |
| BstUI | CGCG | 3 cut(s) | 283, 357, 1281 |
| BstV1I | GCAGC | 7 cut(s) | 154, 482, 884, 1339, 1393, 1490, 1569 |
| BstV2I | GAAGAC | 1 cut(s) | 920 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 127 |
| BstZ17I | GTATAC | 1 cut(s) | 426 |
| Bsu15I | ATCGAT | 2 cut(s) | 644, 1050 |
| BsuRI | GGCC | 5 cut(s) | 131, 177, 888, 1194, 1444 |
| BsuTUI | ATCGAT | 2 cut(s) | 644, 1050 |
| BtgI | CCRYGG | 2 cut(s) | 172, 479 |
| BtgZI | GCGATG | 1 cut(s) | 1534 |
| BtsCI | GGATG | 2 cut(s) | 994, 1326 |
| BtsIMutI | CAGTG | 2 cut(s) | 269, 1156 |
| Cac8I | GCNNGC | 9 cut(s) | 283, 306, 501, 859, 890, 1258, 1281, 1311, 1555 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1484 |
| CfoI | GCGC | 4 cut(s) | 283, 285, 1281, 1283 |
| Cfr13I | GGNCC | 1 cut(s) | 1192 |
| ClaI | ATCGAT | 2 cut(s) | 644, 1050 |
| CseI | GACGC | 1 cut(s) | 73 |
| Csp6I | GTAC | 3 cut(s) | 17, 1371, 1569 |
| CviQI | GTAC | 3 cut(s) | 17, 1371, 1569 |
| DdeI | CTNAG | 4 cut(s) | 1148, 1326, 1361, 1511 |
| DpnI | GATC | 3 cut(s) | 781, 1049, 1269 |
| DpnII | GATC | 3 cut(s) | 779, 1047, 1267 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1176 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1176 |
| EaeI | YGGCCR | 3 cut(s) | 175, 886, 1442 |
| Eam1104I | CTCTTC | 2 cut(s) | 139, 1362 |
| EarI | CTCTTC | 2 cut(s) | 139, 1362 |
| Ecl136II | GAGCTC | 1 cut(s) | 1093 |
| Eco130I | CCWWGG | 3 cut(s) | 172, 479, 1410 |
| Eco24I | GRGCYC | 1 cut(s) | 1095 |
| Eco32I | GATATC | 1 cut(s) | 1073 |
| Eco53kI | GAGCTC | 1 cut(s) | 1093 |
| Eco57I | CTGAAG | 1 cut(s) | 708 |
| EcoICRI | GAGCTC | 1 cut(s) | 1093 |
| EcoRII | CCWGG | 1 cut(s) | 1444 |
| EcoRV | GATATC | 1 cut(s) | 1073 |
| EcoT14I | CCWWGG | 3 cut(s) | 172, 479, 1410 |
| EcoT38I | GRGCYC | 1 cut(s) | 1095 |
| ErhI | CCWWGG | 3 cut(s) | 172, 479, 1410 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 360, 392 |
| FaqI | GGGAC | 3 cut(s) | 56, 1235, 1508 |
| FauI | CCCGC | 2 cut(s) | 99, 350 |
| FauNDI | CATATG | 1 cut(s) | 1453 |
| FblI | GTMKAC | 1 cut(s) | 425 |
| Fnu4HI | GCNGC | 8 cut(s) | 143, 471, 873, 1353, 1407, 1479, 1482, 1558 |
| FokI | GGATG | 2 cut(s) | 1001, 1333 |
| FriOI | GRGCYC | 1 cut(s) | 1095 |
| Fsp4HI | GCNGC | 8 cut(s) | 143, 471, 873, 1353, 1407, 1479, 1482, 1558 |
| FspBI | CTAG | 1 cut(s) | 843 |
| GlaI | GCGC | 4 cut(s) | 282, 284, 1280, 1282 |
| GluI | GCNGC | 8 cut(s) | 143, 471, 873, 1353, 1407, 1479, 1482, 1558 |
| GsaI | CCCAGC | 2 cut(s) | 1488, 1564 |
| HaeIII | GGCC | 5 cut(s) | 131, 177, 888, 1194, 1444 |
| HapII | CCGG | 2 cut(s) | 654, 1433 |
| HgaI | GACGC | 1 cut(s) | 73 |
| HhaI | GCGC | 4 cut(s) | 283, 285, 1281, 1283 |
| Hin6I | GCGC | 4 cut(s) | 281, 283, 1279, 1281 |
| HinP1I | GCGC | 4 cut(s) | 281, 283, 1279, 1281 |
| HincII | GTYRAC | 4 cut(s) | 559, 799, 905, 1186 |
| HindII | GTYRAC | 4 cut(s) | 559, 799, 905, 1186 |
| HinfI | GANTC | 6 cut(s) | 184, 210, 371, 560, 664, 1429 |
| HpaII | CCGG | 2 cut(s) | 654, 1433 |
| HphI | GGTGA | 4 cut(s) | 39, 419, 1394, 1540 |
| Hpy166II | GTNNAC | 8 cut(s) | 269, 426, 559, 799, 905, 1038, 1169, 1186 |
| Hpy188I | TCNGA | 5 cut(s) | 160, 215, 520, 821, 1342 |
| Hpy188III | TCNNGA | 4 cut(s) | 442, 700, 1076, 1433 |
| Hpy8I | GTNNAC | 8 cut(s) | 269, 426, 559, 799, 905, 1038, 1169, 1186 |
| Hpy99I | CGWCG | 1 cut(s) | 67 |
| HpyAV | CCTTC | 4 cut(s) | 177, 574, 740, 1519 |
| HpyCH4III | ACNGT | 4 cut(s) | 33, 550, 601, 709 |
| HpyCH4IV | ACGT | 2 cut(s) | 428, 836 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 250, 467, 854, 1330, 1403, 1457 |
| HpyF3I | CTNAG | 4 cut(s) | 1148, 1326, 1361, 1511 |
| HpySE526I | ACGT | 2 cut(s) | 428, 836 |
| HspAI | GCGC | 4 cut(s) | 281, 283, 1279, 1281 |
| Kpn2I | TCCGGA | 1 cut(s) | 1432 |
| Kzo9I | GATC | 3 cut(s) | 779, 1047, 1267 |
| LguI | GCTCTTC | 1 cut(s) | 1362 |
| LmnI | GCTCC | 3 cut(s) | 854, 1246, 1306 |
| Lsp1109I | GCAGC | 7 cut(s) | 154, 482, 884, 1339, 1393, 1490, 1569 |
| LweI | GCATC | 4 cut(s) | 673, 979, 1303, 1311 |
| MaeI | CTAG | 1 cut(s) | 843 |
| MaeII | ACGT | 2 cut(s) | 428, 836 |
| MaeIII | GTNAC | 1 cut(s) | 1138 |
| MalI | GATC | 3 cut(s) | 781, 1049, 1269 |
| MboI | GATC | 3 cut(s) | 779, 1047, 1267 |
| MfeI | CAATTG | 1 cut(s) | 114 |
| MhlI | GDGCHC | 2 cut(s) | 952, 1095 |
| MlsI | TGGCCA | 2 cut(s) | 177, 888 |
| MluNI | TGGCCA | 2 cut(s) | 177, 888 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MmeI | TCCRAC | 2 cut(s) | 597, 844 |
| MnlI | CCTC | 8 cut(s) | 142, 359, 460, 588, 979, 1026, 1157, 1526 |
| Mox20I | TGGCCA | 2 cut(s) | 177, 888 |
| MroI | TCCGGA | 1 cut(s) | 1432 |
| MscI | TGGCCA | 2 cut(s) | 177, 888 |
| MseI | TTAA | 5 cut(s) | 237, 378, 570, 732, 1422 |
| MslI | CAYNNNNRTG | 2 cut(s) | 478, 1383 |
| Msp20I | TGGCCA | 2 cut(s) | 177, 888 |
| MspA1I | CMGCKG | 2 cut(s) | 1484, 1560 |
| MspI | CCGG | 2 cut(s) | 654, 1433 |
| MspR9I | CCNGG | 2 cut(s) | 655, 1446 |
| MunI | CAATTG | 1 cut(s) | 114 |
| Mva1269I | GAATGC | 1 cut(s) | 1460 |
| MvaI | CCWGG | 1 cut(s) | 1446 |
| MvnI | CGCG | 3 cut(s) | 283, 357, 1281 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 250, 467, 854, 1330, 1403, 1457 |
| NciI | CCSGG | 1 cut(s) | 655 |
| NcoI | CCATGG | 2 cut(s) | 172, 479 |
| NdeI | CATATG | 1 cut(s) | 1453 |
| NdeII | GATC | 3 cut(s) | 779, 1047, 1267 |
| NmuCI | GTSAC | 1 cut(s) | 1138 |
| NspI | RCATGY | 5 cut(s) | 503, 805, 964, 1015, 1175 |
| PaeI | GCATGC | 1 cut(s) | 503 |
| PauI | GCGCGC | 2 cut(s) | 281, 1279 |
| PciI | ACATGT | 1 cut(s) | 960 |
| PciSI | GCTCTTC | 1 cut(s) | 1362 |
| PctI | GAATGC | 1 cut(s) | 1460 |
| PfeI | GAWTC | 5 cut(s) | 184, 210, 371, 664, 1429 |
| PkrI | GCNGC | 8 cut(s) | 144, 472, 874, 1354, 1408, 1480, 1483, 1559 |
| PleI | GAGTC | 1 cut(s) | 554 |
| PpsI | GAGTC | 1 cut(s) | 554 |
| PscI | ACATGT | 1 cut(s) | 960 |
| PshAI | GACNNNNGTC | 1 cut(s) | 68 |
| PsiI | TTATAA | 1 cut(s) | 327 |
| Psp124BI | GAGCTC | 1 cut(s) | 1095 |
| Psp6I | CCWGG | 1 cut(s) | 1444 |
| PspFI | CCCAGC | 2 cut(s) | 1484, 1560 |
| PspGI | CCWGG | 1 cut(s) | 1444 |
| PspPI | GGNCC | 1 cut(s) | 1192 |
| PstI | CTGCAG | 2 cut(s) | 144, 1559 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1484 |
| PteI | GCGCGC | 2 cut(s) | 281, 1279 |
| PvuII | CAGCTG | 1 cut(s) | 1560 |
| RsaI | GTAC | 3 cut(s) | 18, 1372, 1570 |
| RsaNI | GTAC | 3 cut(s) | 17, 1371, 1569 |
| RseI | CAYNNNNRTG | 2 cut(s) | 478, 1383 |
| SacI | GAGCTC | 1 cut(s) | 1095 |
| SapI | GCTCTTC | 1 cut(s) | 1362 |
| SaqAI | TTAA | 5 cut(s) | 237, 378, 570, 732, 1422 |
| SatI | GCNGC | 8 cut(s) | 143, 471, 873, 1353, 1407, 1479, 1482, 1558 |
| Sau3AI | GATC | 3 cut(s) | 779, 1047, 1267 |
| Sau96I | GGNCC | 1 cut(s) | 1192 |
| ScaI | AGTACT | 2 cut(s) | 18, 1372 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 2 cut(s) | 655, 1446 |
| SduI | GDGCHC | 2 cut(s) | 952, 1095 |
| SfaNI | GCATC | 4 cut(s) | 673, 979, 1303, 1311 |
| SfcI | CTRYAG | 2 cut(s) | 140, 1555 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 478, 1383 |
| SmlI | CTYRAG | 1 cut(s) | 1088 |
| SmoI | CTYRAG | 1 cut(s) | 1088 |
| SphI | GCATGC | 1 cut(s) | 503 |
| SsiI | CCGC | 4 cut(s) | 92, 264, 357, 1482 |
| SspMI | CTAG | 1 cut(s) | 843 |
| SstI | GAGCTC | 1 cut(s) | 1095 |
| StyD4I | CCNGG | 2 cut(s) | 653, 1444 |
| StyI | CCWWGG | 3 cut(s) | 172, 479, 1410 |
| TaaI | ACNGT | 4 cut(s) | 33, 550, 601, 709 |
| TaiI | ACGT | 2 cut(s) | 431, 839 |
| TaqI | TCGA | 2 cut(s) | 644, 1050 |
| TaqII | GACCGA | 1 cut(s) | 932 |
| TatI | WGTACW | 2 cut(s) | 16, 1370 |
| TauI | GCSGC | 1 cut(s) | 1484 |
| TfiI | GAWTC | 5 cut(s) | 184, 210, 371, 664, 1429 |
| Tru1I | TTAA | 5 cut(s) | 237, 378, 570, 732, 1422 |
| Tru9I | TTAA | 5 cut(s) | 237, 378, 570, 732, 1422 |
| TscAI | CASTG | 2 cut(s) | 276, 1156 |
| TseFI | GTSAC | 1 cut(s) | 1138 |
| TseI | GCWGC | 7 cut(s) | 142, 470, 872, 1352, 1406, 1478, 1557 |
| Tsp45I | GTSAC | 1 cut(s) | 1138 |
| TspDTI | ATGAA | 8 cut(s) | 17, 176, 312, 677, 926, 1095, 1229, 1538 |
| TspGWI | ACGGA | 1 cut(s) | 1009 |
| TspRI | CASTG | 2 cut(s) | 276, 1156 |
| XapI | RAATTY | 2 cut(s) | 814, 999 |
| XceI | RCATGY | 5 cut(s) | 503, 805, 964, 1015, 1175 |
| XmiI | GTMKAC | 1 cut(s) | 425 |
| XspI | CTAG | 1 cut(s) | 843 |
| ZrmI | AGTACT | 2 cut(s) | 18, 1372 |