Prupe.4G058100_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2779714 .. 2781878
2165 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G058100.1

Sequence Viewer

Length: 1584 bp
ATGAAGAATGGGAAAGTACTCACAAGCAGACCGTCCATGTTCTTCTCACCCCAAAACCATACGACGCTTGTCCCACCAAATCCAGTTTTCCCGCCAAGCTATGTCGCTTCCCCAATTGCCACCACTCTGGCCTCTTCTCTGCAGCACTACATCAATTCAGAAAACCCTTCCCATGGCCAAAAGATTCATACCCATATTCTCAAAACTGGATTCAGACCTAATATCAATGTTTCCATTAAACTGCTTATACTGCACCTGAAATGCGGTTCACTGAAATATGCGCGCCAAGTGTTTGATGAATTGCCTGCACAAACTCTGTCTGCTTATAATTATTTGATTGGTGCATACCTCAAACGCGGGAAAGTTGAAGAATCGCTTAACTTGGTTCGCAGACTTGTTTTTTCTGGTGAAAAGCCTGATGGGTATACGTTTTCTATGGTCTTGAAAGCCTCTACTTGTGCTGGTAATGCAGCATTTCCATGGAGTTTAGGAGTGGTGCATGCCCAGATAATAAAATCAGATGTTGAGCCTGATGATGTTCTTTATACTGTGCTTGTTGACTCTTACATTAAGAATGGGAAGGTCGGCTATGCGAGGACTGTGTTTGATACGATGTTGGAAAAGAATGTTGTATGTTCAACATCGATGATTTCCGGGTATATGAATCAAGGCTCTGTGGAAGATGCTGAAGATATATTCAGGAGAACGGTTGAAAAAGATGTTGTGGTATTTAACGCAATGATTGAAGGTTATAGCAAATCAACTGAATATGCTTGGAGATCATTTGAAGTTTATGTTGACATGCAAAGGTTGAATTTCCGACCTAATATCTCCACGTTTGCTAGTGCTATTGGAGCTTGCTCGGTGTTGGCAGCATTTGAAGTTGGCCAGCAAGTCCAAAGTCAACTTATGAAGACCGAATTATTTTGGGATATAAAAATGGGAAGTGCTCTTATAGACATGTATTCAAAATGTGGAAGAATTGAGGATGCACGGAGAATTTTTGACCACATGCCTCAAAAAAATGTATTTTCGTGGACTTCAATGATCGATGGCTATGGGAAGAATGGATATCCTGATGAAGCACTTGAGCTCTTTAGTATAATGCAAAGAGAACACCAAATTGAACCCAATTTTGTCACATTCCTCAGTGCTTTATCAACTTGTGGACATGCTGGTCTGGTTGACAAGGGCCATGAGATATTTGAAAGCATGAATAGGGACTACTTACTAAAACCAAGAATGGAGCATTATGCTTGCATGGTTGATCTCTTGGGGCGCGCAGGAAGTTTGCATCAAGCATGGGAGCTGGCAATGGGGATGCCTGAGAAGCCCAACTCCGATGTTTGGGCTGCTCTTCTTAGTTCAAGTACTCTACATGGTGATGTTGAGATGGCAAGTATAGCTGCCAAGGAACTTTTTAAGTTGAATCCGGATAGTCGGCCAGGTGCATATGTTGCATTCTCTAATACTTTGGCAGCCGCTGGGAAATGGGACAATGTAAGTGAGCTTAGAGAGAAAATGAAGGTGAGAGGAATATCTAAAGACATCGCCTGCAGCTGGGTTGGTACTGATAGTGGTTGA

Protein Analysis

528

Amino Acids

58.72

Weight (kDa)

6.71

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28690
fragaria_vesca FvH4_5g29510
malus_domestica MD10G1283700.v1.1
prunus_persica Prupe.4G058100_v2.0.a1
pyrus_communis pycom05g28160 pycom10g23660
rosa_chinensis RchiOBHm_Chr5g0010161
rosa_laevigata RLG00000031727
rosa_roxburghii Rroxscaffold_1G00066030
rosa_rugosa Rorug04G0449500
rosa_samantha Rh5AG080400 Rh5BG074900 Rh5CG088700 Rh5DG075900
rosa_wichuraiana Rw5G007440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AasI GACNNNNNNGTC 1 cut(s) 1176
AccI GTMKAC 1 cut(s) 425
AccII CGCG 3 cut(s) 283, 357, 1281
AccIII TCCGGA 1 cut(s) 1432
AciI CCGC 4 cut(s) 92, 264, 357, 1482
AcoI YGGCCR 3 cut(s) 175, 886, 1442
AcsI RAATTY 2 cut(s) 814, 999
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 3 cut(s) 18, 1372, 1570
AfiI CCNNNNNNNGG 3 cut(s) 173, 1347, 1560
AflIII ACRYGT 1 cut(s) 960
AjnI CCWGG 1 cut(s) 1444
AluBI AGCT 7 cut(s) 99, 857, 1093, 1309, 1406, 1510, 1560
AluI AGCT 7 cut(s) 99, 857, 1093, 1309, 1406, 1510, 1560
Alw21I GWGCWC 2 cut(s) 952, 1095
AlwNI CAGNNNCTG 1 cut(s) 1484
Aor13HI TCCGGA 1 cut(s) 1432
AoxI GGCC 5 cut(s) 129, 175, 886, 1192, 1442
ApeKI GCWGC 7 cut(s) 142, 470, 872, 1352, 1406, 1478, 1557
ApoI RAATTY 2 cut(s) 814, 999
AspLEI GCGC 4 cut(s) 283, 285, 1281, 1283
AspS9I GGNCC 1 cut(s) 1192
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 4 cut(s) 39, 419, 1394, 1540
BalI TGGCCA 2 cut(s) 177, 888
BanII GRGCYC 1 cut(s) 1095
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 2 cut(s) 952, 1095
BbvI GCAGC 7 cut(s) 154, 482, 884, 1339, 1393, 1490, 1569
BccI CCATC 3 cut(s) 413, 1046, 1387
BciT130I CCWGG 1 cut(s) 1446
BcnI CCSGG 1 cut(s) 655
BfaI CTAG 1 cut(s) 843
BfmI CTRYAG 2 cut(s) 140, 1555
BisI GCNGC 8 cut(s) 143, 471, 873, 1353, 1407, 1479, 1482, 1558
BlsI GCNGC 8 cut(s) 144, 472, 874, 1354, 1408, 1480, 1483, 1559
BmcAI AGTACT 2 cut(s) 18, 1372
Bme1390I CCNGG 2 cut(s) 655, 1446
BmgT120I GGNCC 1 cut(s) 1192
BmrFI CCNGG 2 cut(s) 655, 1446
BmsI GCATC 4 cut(s) 673, 979, 1303, 1311
BoxI GACNNNNGTC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 1109
BpuMI CCSGG 1 cut(s) 655
Bsa29I ATCGAT 2 cut(s) 644, 1050
BsaJI CCNNGG 3 cut(s) 172, 479, 1410
BsaWI WCCGGW 1 cut(s) 1432
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 1347, 1560
Bse1I ACTGG 2 cut(s) 83, 211
Bse3DI GCAATG 2 cut(s) 744, 1320
BseAI TCCGGA 1 cut(s) 1432
BseBI CCWGG 1 cut(s) 1446
BseCI ATCGAT 2 cut(s) 644, 1050
BseDI CCNNGG 3 cut(s) 172, 479, 1410
BseGI GGATG 2 cut(s) 994, 1326
BseLI CCNNNNNNNGG 3 cut(s) 173, 1347, 1560
BseMI GCAATG 2 cut(s) 744, 1320
BseMII CTCAG 2 cut(s) 1162, 1317
BseNI ACTGG 2 cut(s) 83, 211
BsePI GCGCGC 2 cut(s) 281, 1279
BseXI GCAGC 7 cut(s) 154, 482, 884, 1339, 1393, 1490, 1569
BseYI CCCAGC 2 cut(s) 1484, 1560
BsgI GTGCAG 2 cut(s) 236, 291
Bsh1236I CGCG 3 cut(s) 283, 357, 1281
BshFI GGCC 5 cut(s) 131, 177, 888, 1194, 1444
BshVI ATCGAT 2 cut(s) 644, 1050
BsiHKAI GWGCWC 2 cut(s) 952, 1095
BsiSI CCGG 2 cut(s) 654, 1433
BslFI GGGAC 3 cut(s) 56, 1235, 1508
BslI CCNNNNNNNGG 3 cut(s) 173, 1347, 1560
BsmFI GGGAC 3 cut(s) 56, 1235, 1508
BsmI GAATGC 1 cut(s) 1460
BsnI GGCC 5 cut(s) 131, 177, 888, 1194, 1444
Bsp1286I GDGCHC 2 cut(s) 952, 1095
Bsp13I TCCGGA 1 cut(s) 1432
Bsp143I GATC 3 cut(s) 779, 1047, 1267
Bsp19I CCATGG 2 cut(s) 172, 479
BspACI CCGC 4 cut(s) 92, 264, 357, 1482
BspANI GGCC 5 cut(s) 131, 177, 888, 1194, 1444
BspCNI CTCAG 2 cut(s) 1161, 1318
BspDI ATCGAT 2 cut(s) 644, 1050
BspEI TCCGGA 1 cut(s) 1432
BspFNI CGCG 3 cut(s) 283, 357, 1281
BspMAI CTGCAG 2 cut(s) 144, 1559
BspQI GCTCTTC 1 cut(s) 1362
BsrDI GCAATG 2 cut(s) 744, 1320
BsrI ACTGG 2 cut(s) 83, 211
BssECI CCNNGG 3 cut(s) 172, 479, 1410
BssHII GCGCGC 2 cut(s) 281, 1279
BssMI GATC 3 cut(s) 779, 1047, 1267
BssNAI GTATAC 1 cut(s) 426
BssT1I CCWWGG 3 cut(s) 172, 479, 1410
Bst1107I GTATAC 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 1446
Bst4CI ACNGT 4 cut(s) 33, 550, 601, 709
Bst6I CTCTTC 2 cut(s) 139, 1362
BstAPI GCANNNNNTGC 1 cut(s) 1457
BstC8I GCNNGC 9 cut(s) 283, 306, 501, 859, 890, 1258, 1281, 1311, 1555
BstDEI CTNAG 4 cut(s) 1148, 1326, 1361, 1511
BstDSI CCRYGG 2 cut(s) 172, 479
BstF5I GGATG 2 cut(s) 994, 1326
BstFNI CGCG 3 cut(s) 283, 357, 1281
BstHHI GCGC 4 cut(s) 283, 285, 1281, 1283
BstKTI GATC 3 cut(s) 782, 1050, 1270
BstMBI GATC 3 cut(s) 779, 1047, 1267
BstMWI GCNNNNNNNGC 6 cut(s) 250, 467, 854, 1330, 1403, 1457
BstNI CCWGG 1 cut(s) 1446
BstNSI RCATGY 5 cut(s) 503, 805, 964, 1015, 1175
BstPAI GACNNNNGTC 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 653, 1444
BstSFI CTRYAG 2 cut(s) 140, 1555
BstUI CGCG 3 cut(s) 283, 357, 1281
BstV1I GCAGC 7 cut(s) 154, 482, 884, 1339, 1393, 1490, 1569
BstV2I GAAGAC 1 cut(s) 920
BstXI CCANNNNNNTGG 1 cut(s) 127
BstZ17I GTATAC 1 cut(s) 426
Bsu15I ATCGAT 2 cut(s) 644, 1050
BsuRI GGCC 5 cut(s) 131, 177, 888, 1194, 1444
BsuTUI ATCGAT 2 cut(s) 644, 1050
BtgI CCRYGG 2 cut(s) 172, 479
BtgZI GCGATG 1 cut(s) 1534
BtsCI GGATG 2 cut(s) 994, 1326
BtsIMutI CAGTG 2 cut(s) 269, 1156
Cac8I GCNNGC 9 cut(s) 283, 306, 501, 859, 890, 1258, 1281, 1311, 1555
CaiI CAGNNNCTG 1 cut(s) 1484
CfoI GCGC 4 cut(s) 283, 285, 1281, 1283
Cfr13I GGNCC 1 cut(s) 1192
ClaI ATCGAT 2 cut(s) 644, 1050
CseI GACGC 1 cut(s) 73
Csp6I GTAC 3 cut(s) 17, 1371, 1569
CviQI GTAC 3 cut(s) 17, 1371, 1569
DdeI CTNAG 4 cut(s) 1148, 1326, 1361, 1511
DpnI GATC 3 cut(s) 781, 1049, 1269
DpnII GATC 3 cut(s) 779, 1047, 1267
DrdI GACNNNNNNGTC 1 cut(s) 1176
DseDI GACNNNNNNGTC 1 cut(s) 1176
EaeI YGGCCR 3 cut(s) 175, 886, 1442
Eam1104I CTCTTC 2 cut(s) 139, 1362
EarI CTCTTC 2 cut(s) 139, 1362
Ecl136II GAGCTC 1 cut(s) 1093
Eco130I CCWWGG 3 cut(s) 172, 479, 1410
Eco24I GRGCYC 1 cut(s) 1095
Eco32I GATATC 1 cut(s) 1073
Eco53kI GAGCTC 1 cut(s) 1093
Eco57I CTGAAG 1 cut(s) 708
EcoICRI GAGCTC 1 cut(s) 1093
EcoRII CCWGG 1 cut(s) 1444
EcoRV GATATC 1 cut(s) 1073
EcoT14I CCWWGG 3 cut(s) 172, 479, 1410
EcoT38I GRGCYC 1 cut(s) 1095
ErhI CCWWGG 3 cut(s) 172, 479, 1410
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 3 cut(s) 56, 1235, 1508
FauI CCCGC 2 cut(s) 99, 350
FauNDI CATATG 1 cut(s) 1453
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 8 cut(s) 143, 471, 873, 1353, 1407, 1479, 1482, 1558
FokI GGATG 2 cut(s) 1001, 1333
FriOI GRGCYC 1 cut(s) 1095
Fsp4HI GCNGC 8 cut(s) 143, 471, 873, 1353, 1407, 1479, 1482, 1558
FspBI CTAG 1 cut(s) 843
GlaI GCGC 4 cut(s) 282, 284, 1280, 1282
GluI GCNGC 8 cut(s) 143, 471, 873, 1353, 1407, 1479, 1482, 1558
GsaI CCCAGC 2 cut(s) 1488, 1564
HaeIII GGCC 5 cut(s) 131, 177, 888, 1194, 1444
HapII CCGG 2 cut(s) 654, 1433
HgaI GACGC 1 cut(s) 73
HhaI GCGC 4 cut(s) 283, 285, 1281, 1283
Hin6I GCGC 4 cut(s) 281, 283, 1279, 1281
HinP1I GCGC 4 cut(s) 281, 283, 1279, 1281
HincII GTYRAC 4 cut(s) 559, 799, 905, 1186
HindII GTYRAC 4 cut(s) 559, 799, 905, 1186
HinfI GANTC 6 cut(s) 184, 210, 371, 560, 664, 1429
HpaII CCGG 2 cut(s) 654, 1433
HphI GGTGA 4 cut(s) 39, 419, 1394, 1540
Hpy166II GTNNAC 8 cut(s) 269, 426, 559, 799, 905, 1038, 1169, 1186
Hpy188I TCNGA 5 cut(s) 160, 215, 520, 821, 1342
Hpy188III TCNNGA 4 cut(s) 442, 700, 1076, 1433
Hpy8I GTNNAC 8 cut(s) 269, 426, 559, 799, 905, 1038, 1169, 1186
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 177, 574, 740, 1519
HpyCH4III ACNGT 4 cut(s) 33, 550, 601, 709
HpyCH4IV ACGT 2 cut(s) 428, 836
HpyF10VI GCNNNNNNNGC 6 cut(s) 250, 467, 854, 1330, 1403, 1457
HpyF3I CTNAG 4 cut(s) 1148, 1326, 1361, 1511
HpySE526I ACGT 2 cut(s) 428, 836
HspAI GCGC 4 cut(s) 281, 283, 1279, 1281
Kpn2I TCCGGA 1 cut(s) 1432
Kzo9I GATC 3 cut(s) 779, 1047, 1267
LguI GCTCTTC 1 cut(s) 1362
LmnI GCTCC 3 cut(s) 854, 1246, 1306
Lsp1109I GCAGC 7 cut(s) 154, 482, 884, 1339, 1393, 1490, 1569
LweI GCATC 4 cut(s) 673, 979, 1303, 1311
MaeI CTAG 1 cut(s) 843
MaeII ACGT 2 cut(s) 428, 836
MaeIII GTNAC 1 cut(s) 1138
MalI GATC 3 cut(s) 781, 1049, 1269
MboI GATC 3 cut(s) 779, 1047, 1267
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 952, 1095
MlsI TGGCCA 2 cut(s) 177, 888
MluNI TGGCCA 2 cut(s) 177, 888
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 597, 844
MnlI CCTC 8 cut(s) 142, 359, 460, 588, 979, 1026, 1157, 1526
Mox20I TGGCCA 2 cut(s) 177, 888
MroI TCCGGA 1 cut(s) 1432
MscI TGGCCA 2 cut(s) 177, 888
MseI TTAA 5 cut(s) 237, 378, 570, 732, 1422
MslI CAYNNNNRTG 2 cut(s) 478, 1383
Msp20I TGGCCA 2 cut(s) 177, 888
MspA1I CMGCKG 2 cut(s) 1484, 1560
MspI CCGG 2 cut(s) 654, 1433
MspR9I CCNGG 2 cut(s) 655, 1446
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 1460
MvaI CCWGG 1 cut(s) 1446
MvnI CGCG 3 cut(s) 283, 357, 1281
MwoI GCNNNNNNNGC 6 cut(s) 250, 467, 854, 1330, 1403, 1457
NciI CCSGG 1 cut(s) 655
NcoI CCATGG 2 cut(s) 172, 479
NdeI CATATG 1 cut(s) 1453
NdeII GATC 3 cut(s) 779, 1047, 1267
NmuCI GTSAC 1 cut(s) 1138
NspI RCATGY 5 cut(s) 503, 805, 964, 1015, 1175
PaeI GCATGC 1 cut(s) 503
PauI GCGCGC 2 cut(s) 281, 1279
PciI ACATGT 1 cut(s) 960
PciSI GCTCTTC 1 cut(s) 1362
PctI GAATGC 1 cut(s) 1460
PfeI GAWTC 5 cut(s) 184, 210, 371, 664, 1429
PkrI GCNGC 8 cut(s) 144, 472, 874, 1354, 1408, 1480, 1483, 1559
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PscI ACATGT 1 cut(s) 960
PshAI GACNNNNGTC 1 cut(s) 68
PsiI TTATAA 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 1095
Psp6I CCWGG 1 cut(s) 1444
PspFI CCCAGC 2 cut(s) 1484, 1560
PspGI CCWGG 1 cut(s) 1444
PspPI GGNCC 1 cut(s) 1192
PstI CTGCAG 2 cut(s) 144, 1559
PstNI CAGNNNCTG 1 cut(s) 1484
PteI GCGCGC 2 cut(s) 281, 1279
PvuII CAGCTG 1 cut(s) 1560
RsaI GTAC 3 cut(s) 18, 1372, 1570
RsaNI GTAC 3 cut(s) 17, 1371, 1569
RseI CAYNNNNRTG 2 cut(s) 478, 1383
SacI GAGCTC 1 cut(s) 1095
SapI GCTCTTC 1 cut(s) 1362
SaqAI TTAA 5 cut(s) 237, 378, 570, 732, 1422
SatI GCNGC 8 cut(s) 143, 471, 873, 1353, 1407, 1479, 1482, 1558
Sau3AI GATC 3 cut(s) 779, 1047, 1267
Sau96I GGNCC 1 cut(s) 1192
ScaI AGTACT 2 cut(s) 18, 1372
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 655, 1446
SduI GDGCHC 2 cut(s) 952, 1095
SfaNI GCATC 4 cut(s) 673, 979, 1303, 1311
SfcI CTRYAG 2 cut(s) 140, 1555
SmiMI CAYNNNNRTG 2 cut(s) 478, 1383
SmlI CTYRAG 1 cut(s) 1088
SmoI CTYRAG 1 cut(s) 1088
SphI GCATGC 1 cut(s) 503
SsiI CCGC 4 cut(s) 92, 264, 357, 1482
SspMI CTAG 1 cut(s) 843
SstI GAGCTC 1 cut(s) 1095
StyD4I CCNGG 2 cut(s) 653, 1444
StyI CCWWGG 3 cut(s) 172, 479, 1410
TaaI ACNGT 4 cut(s) 33, 550, 601, 709
TaiI ACGT 2 cut(s) 431, 839
TaqI TCGA 2 cut(s) 644, 1050
TaqII GACCGA 1 cut(s) 932
TatI WGTACW 2 cut(s) 16, 1370
TauI GCSGC 1 cut(s) 1484
TfiI GAWTC 5 cut(s) 184, 210, 371, 664, 1429
Tru1I TTAA 5 cut(s) 237, 378, 570, 732, 1422
Tru9I TTAA 5 cut(s) 237, 378, 570, 732, 1422
TscAI CASTG 2 cut(s) 276, 1156
TseFI GTSAC 1 cut(s) 1138
TseI GCWGC 7 cut(s) 142, 470, 872, 1352, 1406, 1478, 1557
Tsp45I GTSAC 1 cut(s) 1138
TspDTI ATGAA 8 cut(s) 17, 176, 312, 677, 926, 1095, 1229, 1538
TspGWI ACGGA 1 cut(s) 1009
TspRI CASTG 2 cut(s) 276, 1156
XapI RAATTY 2 cut(s) 814, 999
XceI RCATGY 5 cut(s) 503, 805, 964, 1015, 1175
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 1 cut(s) 843
ZrmI AGTACT 2 cut(s) 18, 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.