Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0016088

Physical Location & Seq

Genomic Coordinates Reverse (-)

28957221 .. 28958297

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATTAGAAAAGACGTTGAGCCTGATGATGTACTTTATACTGCGCTTGTAGACTCTTACGTTAAGAATGGGAAGGTCCAGTATGCGAGGACTGTGTTTGATATGACGTTGGAAAAGAATGTGATATGTTCGACGTCCATGATTTCTGGATACATGAATCGGGGCTCTGTGGAAGATGCTGAAGATATATTTAGGAAAACGGTTGAAAAAGATGTGGTGGTATTTAACGCAATGATTGAAGGTTACAGCAAATCGGTTGAATATGCGAGGAGATCACTTGAGGTTTATATTGACATGCAACGATTGAATTTCCTACCTAATCTCTCTACATTTGCTAGTGTTATTGGAGCTTGCTCAGTGTTGGCATTGTTTGAAGTTGGCCAACAAGTCCATAGTCATCTTATGAAGACTGGATTGTTTTTGGACATAAAGATGGGCAGTGCTCTTATTGACATGTACTCAAAATGTGGAAGAGTTGAGGATGCTCGGAGAGTTTTTGACCACATGCCCGAAAAAAATGTGTTTTTGTGGACTTCAATGATCGATGGTTATGGGAAGAATGGATATCCTGACAAAGCACTTGAGCTCTTTCATATAATGCAAAGAAAACACCAAATTGAACCCAATTTTGTAACATTCCTCAGTGCTCTCTCAGCCTGCGGACACGCTGGGCTAGTAGACAAAGGCATGGAGATCTTTGAAAGTATGGATAGGGACTACTCATTAAAACCAAGGATGGAGCATTATGCTTGCATGGTTGATCTCTTGGGACGTGCAGGAAGTTTGCGTCAAGCGTGGGAGTTTGGAATGGAGATGCCTGAGAAGCCCAACTCCGATGTTTGGGCAGCTCTTCTTAGTTCAAGCACACTACATGGTGATGTTGAGATGGCAAATATAGCTGCCAAGGAACTTTTTAAATTGAATCCTGATGGCCGGCCAGGGGCATATGTTGCATTCTCTAATACTTTGGCGACCGCTGGGAAATGGGAAAGTGTAATTGAGCTTAGAGAGAAAATGAAGTTAAGCGGGATATCTAAAGACACCGCCTGCAGTTGGATTGATACTGATAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

359

Amino Acids

40.22

Weight (kDa)

5.48

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 118	1.2e-06	PPR repeat family
PPR_2	PF13041	172 - 220	3.5e-10	PPR repeat family
PPR	PF01535	176 - 203	3.7e-09	PPR repeat
E_motif	PF20431	291 - 354	1.9e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28690
fragaria_vesca	FvH4_5g29510
malus_domestica	MD10G1283700.v1.1
prunus_persica	Prupe.4G058100_v2.0.a1
pyrus_communis	pycom05g28160 pycom10g23660
rosa_chinensis	RchiOBHm_Chr5g0010161
rosa_laevigata	RLG00000031727
rosa_roxburghii	Rroxscaffold_1G00066030
rosa_rugosa	Rorug04G0449500
rosa_samantha	Rh5AG080400 Rh5BG074900 Rh5CG088700 Rh5DG075900
rosa_wichuraiana	Rw5G007440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	51, 678
AciI	CCGC	4 cut(s)	660, 975, 1026, 1044
AcoI	YGGCCR	3 cut(s)	379, 931, 935
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	33, 458
AfiI	CCNNNNNNNGG	3 cut(s)	840, 940, 1053
AflIII	ACRYGT	1 cut(s)	453
AjiI	CACGTC	1 cut(s)	773
AjnI	CCWGG	1 cut(s)	937
AluBI	AGCT	5 cut(s)	350, 586, 848, 899, 1003
AluI	AGCT	5 cut(s)	350, 586, 848, 899, 1003
Alw21I	GWGCWC	3 cut(s)	445, 588, 649
AoxI	GGCC	3 cut(s)	379, 931, 935
ApeKI	GCWGC	2 cut(s)	845, 899
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	887
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	2 cut(s)	167, 588
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	3 cut(s)	445, 588, 649
BbvI	GCAGC	2 cut(s)	857, 886
BccI	CCATC	5 cut(s)	427, 539, 730, 880, 923
BciT130I	CCWGG	1 cut(s)	939
BciVI	GTATCC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	336, 674
BfmI	CTRYAG	1 cut(s)	1048
BfuI	GTATCC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	2 cut(s)	846, 900
BlsI	GCNGC	2 cut(s)	847, 901
Bme1390I	CCNGG	1 cut(s)	939
Bme18I	GGWCC	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	939
BmsI	GCATC	3 cut(s)	166, 472, 804
BpiI	GAAGAC	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	299, 602
Bsa29I	ATCGAT	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	731, 903, 938
Bsc4I	CCNNNNNNNGG	3 cut(s)	840, 940, 1053
Bse118I	RCCGGY	1 cut(s)	933
Bse1I	ACTGG	2 cut(s)	79, 415
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	939
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	731, 903, 938
BseGI	GGATG	2 cut(s)	487, 741
BseLI	CCNNNNNNNGG	3 cut(s)	840, 940, 1053
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	4 cut(s)	369, 655, 666, 810
BseNI	ACTGG	2 cut(s)	79, 415
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	857, 886
BseYI	CCCAGC	2 cut(s)	668, 977
BsgI	GTGCAG	1 cut(s)	795
Bsh1285I	CGRYCG	1 cut(s)	975
BshFI	GGCC	3 cut(s)	381, 933, 937
BshVI	ATCGAT	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	975
BsiHKAI	GWGCWC	3 cut(s)	445, 588, 649
BsiSI	CCGG	1 cut(s)	934
BslFI	GGGAC	2 cut(s)	728, 783
BslI	CCNNNNNNNGG	3 cut(s)	840, 940, 1053
BsmFI	GGGAC	2 cut(s)	728, 783
BsmI	GAATGC	1 cut(s)	953
BsnI	GGCC	3 cut(s)	381, 933, 937
Bsp1286I	GDGCHC	4 cut(s)	167, 445, 588, 649
Bsp143I	GATC	4 cut(s)	272, 540, 693, 760
BspACI	CCGC	4 cut(s)	660, 975, 1026, 1044
BspANI	GGCC	3 cut(s)	381, 933, 937
BspCNI	CTCAG	4 cut(s)	368, 654, 665, 811
BspDI	ATCGAT	1 cut(s)	543
BspMAI	CTGCAG	1 cut(s)	1052
BspQI	GCTCTTC	1 cut(s)	855
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	933
BsrI	ACTGG	2 cut(s)	79, 415
BssAI	RCCGGY	1 cut(s)	933
BssECI	CCNNGG	3 cut(s)	731, 903, 938
BssMI	GATC	4 cut(s)	272, 540, 693, 760
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	2 cut(s)	731, 903
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	2 cut(s)	94, 202
Bst6I	CTCTTC	2 cut(s)	466, 855
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstC8I	GCNNGC	5 cut(s)	352, 658, 751, 935, 1048
BstDEI	CTNAG	6 cut(s)	355, 641, 652, 819, 854, 1004
BstF5I	GGATG	2 cut(s)	487, 741
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	275, 543, 696, 763
BstMBI	GATC	4 cut(s)	272, 540, 693, 760
BstMCI	CGRYCG	1 cut(s)	975
BstMWI	GCNNNNNNNGC	4 cut(s)	653, 823, 896, 950
BstNI	CCWGG	1 cut(s)	939
BstNSI	RCATGY	3 cut(s)	298, 457, 508
BstSCI	CCNGG	1 cut(s)	937
BstSFI	CTRYAG	1 cut(s)	1048
BstV1I	GCAGC	2 cut(s)	857, 886
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
Bsu15I	ATCGAT	1 cut(s)	543
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	381, 933, 937
BsuTUI	ATCGAT	1 cut(s)	543
BtrI	CACGTC	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	487, 741
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	3 cut(s)	363, 445, 649
Cac8I	GCNNGC	5 cut(s)	352, 658, 751, 935, 1048
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	933
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	543
CseI	GACGC	1 cut(s)	776
Csp6I	GTAC	2 cut(s)	32, 457
CviAII	CATG	8 cut(s)	139, 154, 295, 454, 505, 688, 754, 872
CviQI	GTAC	2 cut(s)	32, 457
DdeI	CTNAG	6 cut(s)	355, 641, 652, 819, 854, 1004
DpnI	GATC	4 cut(s)	274, 542, 695, 762
DpnII	GATC	4 cut(s)	272, 540, 693, 760
DraI	TTTAAA	1 cut(s)	916
EaeI	YGGCCR	3 cut(s)	379, 931, 935
Eam1104I	CTCTTC	2 cut(s)	466, 855
EarI	CTCTTC	2 cut(s)	466, 855
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	2 cut(s)	731, 903
Eco24I	GRGCYC	2 cut(s)	167, 588
Eco32I	GATATC	2 cut(s)	566, 1032
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	937
EcoRV	GATATC	2 cut(s)	566, 1032
EcoT14I	CCWWGG	2 cut(s)	731, 903
EcoT38I	GRGCYC	2 cut(s)	167, 588
ErhI	CCWWGG	2 cut(s)	731, 903
FaeI	CATG	8 cut(s)	142, 157, 298, 457, 508, 691, 757, 875
FaqI	GGGAC	2 cut(s)	728, 783
FatI	CATG	8 cut(s)	138, 153, 294, 453, 504, 687, 753, 871
FauI	CCCGC	1 cut(s)	1019
FauNDI	CATATG	1 cut(s)	946
FblI	GTMKAC	2 cut(s)	51, 678
Fnu4HI	GCNGC	2 cut(s)	846, 900
FokI	GGATG	2 cut(s)	494, 748
FriOI	GRGCYC	2 cut(s)	167, 588
FseI	GGCCGGCC	1 cut(s)	937
Fsp4HI	GCNGC	2 cut(s)	846, 900
FspBI	CTAG	2 cut(s)	336, 674
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	846, 900
GsaI	CCCAGC	2 cut(s)	672, 981
HaeIII	GGCC	3 cut(s)	381, 933, 937
HapII	CCGG	1 cut(s)	934
HgaI	GACGC	1 cut(s)	776
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	8 cut(s)	142, 157, 298, 457, 508, 691, 757, 875
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	53, 157, 922
HpaII	CCGG	1 cut(s)	934
HphI	GGTGA	1 cut(s)	887
Hpy166II	GTNNAC	3 cut(s)	52, 531, 679
Hpy188I	TCNGA	2 cut(s)	489, 835
Hpy188III	TCNNGA	3 cut(s)	147, 569, 926
Hpy8I	GTNNAC	3 cut(s)	52, 531, 679
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	67, 233
HpyCH4III	ACNGT	2 cut(s)	94, 202
HpyCH4IV	ACGT	5 cut(s)	15, 60, 107, 134, 772
HpyCH4V	TGCA	6 cut(s)	298, 601, 753, 776, 953, 1050
HpyF10VI	GCNNNNNNNGC	4 cut(s)	653, 823, 896, 950
HpyF3I	CTNAG	6 cut(s)	355, 641, 652, 819, 854, 1004
HpySE526I	ACGT	5 cut(s)	15, 60, 107, 134, 772
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	8 cut(s)	142, 157, 298, 457, 508, 691, 757, 875
HspAI	GCGC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	933
KroNI	GCCGGC	1 cut(s)	935
Kzo9I	GATC	4 cut(s)	272, 540, 693, 760
LguI	GCTCTTC	1 cut(s)	855
LmnI	GCTCC	2 cut(s)	347, 739
Lsp1109I	GCAGC	2 cut(s)	857, 886
LweI	GCATC	3 cut(s)	166, 472, 804
MaeI	CTAG	2 cut(s)	336, 674
MaeII	ACGT	5 cut(s)	15, 60, 107, 134, 772
MaeIII	GTNAC	2 cut(s)	242, 631
MalI	GATC	4 cut(s)	274, 542, 695, 762
MboI	GATC	4 cut(s)	272, 540, 693, 760
MboII	GAAGA	6 cut(s)	185, 194, 418, 483, 568, 842
MflI	RGATCY	1 cut(s)	693
MhlI	GDGCHC	4 cut(s)	167, 445, 588, 649
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	5 cut(s)	307, 615, 625, 917, 996
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	90, 1034
MnlI	CCTC	5 cut(s)	81, 261, 274, 472, 650
Mox20I	TGGCCA	1 cut(s)	381
MroNI	GCCGGC	1 cut(s)	933
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	5 cut(s)	63, 225, 725, 915, 1022
MslI	CAYNNNNRTG	2 cut(s)	431, 876
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	1 cut(s)	934
MspR9I	CCNGG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	953
MvaI	CCWGG	1 cut(s)	939
MwoI	GCNNNNNNNGC	4 cut(s)	653, 823, 896, 950
NaeI	GCCGGC	1 cut(s)	935
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	4 cut(s)	272, 540, 693, 760
NgoMIV	GCCGGC	1 cut(s)	933
NlaIII	CATG	8 cut(s)	142, 157, 298, 457, 508, 691, 757, 875
NspI	RCATGY	3 cut(s)	298, 457, 508
PciI	ACATGT	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	855
PctI	GAATGC	1 cut(s)	953
PdiI	GCCGGC	1 cut(s)	935
PfeI	GAWTC	2 cut(s)	157, 922
PkrI	GCNGC	2 cut(s)	847, 901
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	937
PspFI	CCCAGC	2 cut(s)	668, 977
PspGI	CCWGG	1 cut(s)	937
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	1052
PsuI	RGATCY	1 cut(s)	693
RigI	GGCCGGCC	1 cut(s)	937
RsaI	GTAC	2 cut(s)	33, 458
RsaNI	GTAC	2 cut(s)	32, 457
RseI	CAYNNNNRTG	2 cut(s)	431, 876
SacI	GAGCTC	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	855
SaqAI	TTAA	5 cut(s)	63, 225, 725, 915, 1022
SatI	GCNGC	2 cut(s)	846, 900
Sau3AI	GATC	4 cut(s)	272, 540, 693, 760
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	939
SduI	GDGCHC	4 cut(s)	167, 445, 588, 649
SfaNI	GCATC	3 cut(s)	166, 472, 804
SfcI	CTRYAG	1 cut(s)	1048
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	431, 876
SmlI	CTYRAG	2 cut(s)	278, 581
SmoI	CTYRAG	2 cut(s)	278, 581
Sse9I	AATT	5 cut(s)	307, 615, 625, 917, 996
SsiI	CCGC	4 cut(s)	660, 975, 1026, 1044
SspMI	CTAG	2 cut(s)	336, 674
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	937
StyI	CCWWGG	2 cut(s)	731, 903
TaaI	ACNGT	2 cut(s)	94, 202
TaiI	ACGT	5 cut(s)	18, 63, 110, 137, 775
TaqI	TCGA	2 cut(s)	131, 543
TasI	AATT	5 cut(s)	307, 615, 625, 917, 996
TatI	WGTACW	2 cut(s)	31, 456
TfiI	GAWTC	2 cut(s)	157, 922
Tru1I	TTAA	5 cut(s)	63, 225, 725, 915, 1022
Tru9I	TTAA	5 cut(s)	63, 225, 725, 915, 1022
TscAI	CASTG	3 cut(s)	363, 445, 649
TseI	GCWGC	2 cut(s)	845, 899
TspDTI	ATGAA	4 cut(s)	170, 419, 581, 1031
TspRI	CASTG	3 cut(s)	363, 445, 649
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	3 cut(s)	298, 457, 508
XmiI	GTMKAC	2 cut(s)	51, 678
XspI	CTAG	2 cut(s)	336, 674
ZraI	GACGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.