Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 90 - 261 | 1.5e-44 | DEAD/DEAH box helicase |
| ResIII | PF04851 | 109 - 253 | 2.7e-07 | Type III restriction enzyme, res subunit |
| Helicase_C | PF00271 | 298 - 407 | 8.8e-24 | Helicase conserved C-terminal domain |
| CTE_SPB4 | PF13959 | 466 - 509 | 1.5e-10 | ATP-dependent rRNA helicase SPB4-like, C-terminal extension |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 191, 323 |
| AccI | GTMKAC | 2 cut(s) | 1146, 1947 |
| AccII | CGCG | 4 cut(s) | 28, 159, 299, 1216 |
| AciI | CCGC | 8 cut(s) | 28, 105, 128, 181, 306, 327, 368, 1290 |
| AclI | AACGTT | 1 cut(s) | 461 |
| AclWI | GGATC | 3 cut(s) | 89, 1519, 1865 |
| AcoI | YGGCCR | 2 cut(s) | 1204, 1398 |
| AcsI | RAATTY | 3 cut(s) | 622, 931, 1910 |
| AcuI | CTGAAG | 2 cut(s) | 1040, 1781 |
| AcyI | GRCGYC | 3 cut(s) | 192, 237, 324 |
| AfaI | GTAC | 4 cut(s) | 257, 812, 1376, 1421 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 104, 153, 410, 661, 1346 |
| AflIII | ACRYGT | 1 cut(s) | 959 |
| AjnI | CCWGG | 5 cut(s) | 197, 586, 1006, 1137, 1390 |
| Alw26I | GTCTC | 5 cut(s) | 126, 608, 1324, 1578, 1613 |
| AlwI | GGATC | 3 cut(s) | 89, 1519, 1865 |
| Ama87I | CYCGRG | 1 cut(s) | 1752 |
| AoxI | GGCC | 7 cut(s) | 144, 508, 1123, 1204, 1398, 1407, 1862 |
| ApaI | GGGCCC | 1 cut(s) | 1866 |
| ApeKI | GCWGC | 1 cut(s) | 420 |
| ApoI | RAATTY | 3 cut(s) | 622, 931, 1910 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1911 |
| AspLEI | GCGC | 8 cut(s) | 159, 194, 246, 301, 326, 925, 1216, 1218 |
| AspS9I | GGNCC | 9 cut(s) | 145, 163, 652, 802, 1093, 1407, 1840, 1862, 1863 |
| AsuHPI | GGTGA | 3 cut(s) | 1658, 1948, 2141 |
| AsuII | TTCGAA | 1 cut(s) | 1684 |
| AvaI | CYCGRG | 1 cut(s) | 1752 |
| AvaII | GGWCC | 5 cut(s) | 163, 652, 802, 1093, 1840 |
| AxyI | CCTNAGG | 1 cut(s) | 405 |
| BaeGI | GKGCMC | 1 cut(s) | 1866 |
| BalI | TGGCCA | 1 cut(s) | 1400 |
| BanI | GGYRCC | 2 cut(s) | 191, 323 |
| BanII | GRGCYC | 1 cut(s) | 1866 |
| BbsI | GAAGAC | 5 cut(s) | 233, 739, 1019, 1670, 1729 |
| BbvI | GCAGC | 1 cut(s) | 432 |
| BccI | CCATC | 7 cut(s) | 224, 390, 404, 716, 1880, 1936, 2080 |
| BceAI | ACGGC | 2 cut(s) | 1843, 1968 |
| BciT130I | CCWGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| BcoDI | GTCTC | 5 cut(s) | 126, 608, 1324, 1578, 1613 |
| BfaI | CTAG | 6 cut(s) | 453, 896, 936, 1367, 1806, 1875 |
| BfmI | CTRYAG | 1 cut(s) | 641 |
| BfoI | RGCGCY | 2 cut(s) | 195, 327 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1406 |
| BglII | AGATCT | 1 cut(s) | 778 |
| BisI | GCNGC | 5 cut(s) | 106, 307, 327, 421, 1290 |
| BlsI | GCNGC | 5 cut(s) | 107, 308, 328, 422, 1291 |
| Bme1390I | CCNGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| Bme18I | GGWCC | 5 cut(s) | 163, 652, 802, 1093, 1840 |
| BmeT110I | CYCGRG | 1 cut(s) | 1752 |
| BmgT120I | GGNCC | 9 cut(s) | 145, 163, 652, 802, 1093, 1407, 1840, 1862, 1863 |
| BmiI | GGNNCC | 9 cut(s) | 109, 147, 165, 193, 325, 340, 804, 1842, 1864 |
| BmrFI | CCNGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| BmrI | ACTGGG | 2 cut(s) | 1159, 1860 |
| BmsI | GCATC | 9 cut(s) | 934, 1193, 1242, 1276, 1320, 1505, 1684, 2017, 2197 |
| BmuI | ACTGGG | 2 cut(s) | 1159, 1860 |
| BpiI | GAAGAC | 5 cut(s) | 233, 739, 1019, 1670, 1729 |
| Bpu10I | CCTNAGC | 2 cut(s) | 815, 1925 |
| Bpu14I | TTCGAA | 1 cut(s) | 1684 |
| BpuEI | CTTGAG | 1 cut(s) | 1295 |
| Bsa29I | ATCGAT | 1 cut(s) | 2083 |
| BsaAI | YACGTR | 2 cut(s) | 962, 1419 |
| BsaHI | GRCGYC | 3 cut(s) | 192, 237, 324 |
| BsaJI | CCNNGG | 2 cut(s) | 141, 231 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 92, 122, 155, 185 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 104, 153, 410, 661, 1346 |
| Bse118I | RCCGGY | 3 cut(s) | 188, 335, 1744 |
| Bse1I | ACTGG | 5 cut(s) | 247, 579, 1154, 1478, 1866 |
| Bse21I | CCTNAGG | 1 cut(s) | 405 |
| Bse3DI | GCAATG | 2 cut(s) | 876, 2163 |
| BseBI | CCWGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| BseCI | ATCGAT | 1 cut(s) | 2083 |
| BseDI | CCNNGG | 2 cut(s) | 141, 231 |
| BseGI | GGATG | 4 cut(s) | 415, 616, 1184, 2047 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 104, 153, 410, 661, 1346 |
| BseMI | GCAATG | 2 cut(s) | 876, 2163 |
| BseMII | CTCAG | 4 cut(s) | 396, 1272, 1695, 2046 |
| BseNI | ACTGG | 5 cut(s) | 247, 579, 1154, 1478, 1866 |
| BsePI | GCGCGC | 1 cut(s) | 1214 |
| BseRI | GAGGAG | 3 cut(s) | 59, 1646, 1727 |
| BseSI | GKGCMC | 1 cut(s) | 1866 |
| BseXI | GCAGC | 1 cut(s) | 432 |
| BseYI | CCCAGC | 2 cut(s) | 1859, 2156 |
| Bsh1236I | CGCG | 4 cut(s) | 28, 159, 299, 1216 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2087 |
| BshFI | GGCC | 7 cut(s) | 146, 510, 1125, 1206, 1400, 1409, 1864 |
| BshNI | GGYRCC | 2 cut(s) | 191, 323 |
| BshVI | ATCGAT | 1 cut(s) | 2083 |
| BsiEI | CGRYCG | 1 cut(s) | 2087 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1752 |
| BsiSI | CCGG | 4 cut(s) | 189, 336, 342, 1745 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 104, 153, 410, 661, 1346 |
| BsmAI | GTCTC | 5 cut(s) | 126, 608, 1324, 1578, 1613 |
| BsmI | GAATGC | 1 cut(s) | 1615 |
| BsnI | GGCC | 7 cut(s) | 146, 510, 1125, 1206, 1400, 1409, 1864 |
| BsoBI | CYCGRG | 1 cut(s) | 1752 |
| Bsp119I | TTCGAA | 1 cut(s) | 1684 |
| Bsp120I | GGGCCC | 1 cut(s) | 1862 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1866 |
| Bsp143I | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| BspACI | CCGC | 8 cut(s) | 28, 105, 128, 181, 306, 327, 368, 1290 |
| BspANI | GGCC | 7 cut(s) | 146, 510, 1125, 1206, 1400, 1409, 1864 |
| BspCNI | CTCAG | 4 cut(s) | 397, 1271, 1696, 2047 |
| BspDI | ATCGAT | 1 cut(s) | 2083 |
| BspFNI | CGCG | 4 cut(s) | 28, 159, 299, 1216 |
| BspHI | TCATGA | 1 cut(s) | 1078 |
| BspLI | GGNNCC | 9 cut(s) | 109, 147, 165, 193, 325, 340, 804, 1842, 1864 |
| BspPI | GGATC | 3 cut(s) | 89, 1519, 1865 |
| BspQI | GCTCTTC | 1 cut(s) | 2061 |
| BspT104I | TTCGAA | 1 cut(s) | 1684 |
| BspT107I | GGYRCC | 2 cut(s) | 191, 323 |
| BsrDI | GCAATG | 2 cut(s) | 876, 2163 |
| BsrFI | RCCGGY | 3 cut(s) | 188, 335, 1744 |
| BsrI | ACTGG | 5 cut(s) | 247, 579, 1154, 1478, 1866 |
| BssAI | RCCGGY | 3 cut(s) | 188, 335, 1744 |
| BssECI | CCNNGG | 2 cut(s) | 141, 231 |
| BssHII | GCGCGC | 1 cut(s) | 1214 |
| BssMI | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| BssNI | GRCGYC | 3 cut(s) | 192, 237, 324 |
| BssT1I | CCWWGG | 2 cut(s) | 141, 231 |
| Bst2UI | CCWGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| Bst4CI | ACNGT | 3 cut(s) | 1093, 1572, 2214 |
| Bst6I | CTCTTC | 7 cut(s) | 138, 752, 1653, 1926, 2012, 2031, 2061 |
| BstACI | GRCGYC | 3 cut(s) | 192, 237, 324 |
| BstBAI | YACGTR | 2 cut(s) | 962, 1419 |
| BstBI | TTCGAA | 1 cut(s) | 1684 |
| BstC8I | GCNNGC | 8 cut(s) | 190, 508, 821, 1216, 1746, 1857, 1976, 2196 |
| BstDEI | CTNAG | 8 cut(s) | 405, 726, 791, 815, 1258, 1704, 1925, 2055 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 659 |
| BstF5I | GGATG | 4 cut(s) | 415, 616, 1184, 2047 |
| BstFNI | CGCG | 4 cut(s) | 28, 159, 299, 1216 |
| BstH2I | RGCGCY | 2 cut(s) | 195, 327 |
| BstHHI | GCGC | 8 cut(s) | 159, 194, 246, 301, 326, 925, 1216, 1218 |
| BstKTI | GATC | 9 cut(s) | 84, 670, 781, 1238, 1527, 1782, 1873, 1972, 2087 |
| BstMAI | GTCTC | 5 cut(s) | 126, 608, 1324, 1578, 1613 |
| BstMBI | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| BstMCI | CGRYCG | 1 cut(s) | 2087 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 189, 298, 704, 839, 1406, 1856, 1861, 1980 |
| BstNI | CCWGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| BstSCI | CCNGG | 5 cut(s) | 197, 586, 1006, 1137, 1390 |
| BstSFI | CTRYAG | 1 cut(s) | 641 |
| BstSLI | GKGCMC | 1 cut(s) | 1866 |
| BstUI | CGCG | 4 cut(s) | 28, 159, 299, 1216 |
| BstV1I | GCAGC | 1 cut(s) | 432 |
| BstV2I | GAAGAC | 5 cut(s) | 233, 739, 1019, 1670, 1729 |
| BstX2I | RGATCY | 2 cut(s) | 778, 1524 |
| BstYI | RGATCY | 2 cut(s) | 778, 1524 |
| Bsu15I | ATCGAT | 1 cut(s) | 2083 |
| Bsu36I | CCTNAGG | 1 cut(s) | 405 |
| BsuRI | GGCC | 7 cut(s) | 146, 510, 1125, 1206, 1400, 1409, 1864 |
| BsuTUI | ATCGAT | 1 cut(s) | 2083 |
| BtsCI | GGATG | 4 cut(s) | 415, 616, 1184, 2047 |
| BtsIMutI | CAGTG | 3 cut(s) | 698, 1351, 1873 |
| Cac8I | GCNNGC | 8 cut(s) | 190, 508, 821, 1216, 1746, 1857, 1976, 2196 |
| CciI | TCATGA | 1 cut(s) | 1078 |
| CfoI | GCGC | 8 cut(s) | 159, 194, 246, 301, 326, 925, 1216, 1218 |
| Cfr10I | RCCGGY | 3 cut(s) | 188, 335, 1744 |
| Cfr13I | GGNCC | 9 cut(s) | 145, 163, 652, 802, 1093, 1407, 1840, 1862, 1863 |
| ClaI | ATCGAT | 1 cut(s) | 2083 |
| CseI | GACGC | 2 cut(s) | 245, 1967 |
| CsiI | ACCWGGT | 1 cut(s) | 197 |
| Csp6I | GTAC | 4 cut(s) | 256, 811, 1375, 1420 |
| CviAII | CATG | 7 cut(s) | 78, 118, 265, 607, 824, 1031, 1079 |
| CviQI | GTAC | 4 cut(s) | 256, 811, 1375, 1420 |
| DdeI | CTNAG | 8 cut(s) | 405, 726, 791, 815, 1258, 1704, 1925, 2055 |
| DinI | GGCGCC | 2 cut(s) | 193, 325 |
| DpnI | GATC | 9 cut(s) | 83, 669, 780, 1237, 1526, 1781, 1872, 1971, 2086 |
| DpnII | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| EaeI | YGGCCR | 2 cut(s) | 1204, 1398 |
| Eam1104I | CTCTTC | 7 cut(s) | 138, 752, 1653, 1926, 2012, 2031, 2061 |
| EarI | CTCTTC | 7 cut(s) | 138, 752, 1653, 1926, 2012, 2031, 2061 |
| Eco130I | CCWWGG | 2 cut(s) | 141, 231 |
| Eco147I | AGGCCT | 1 cut(s) | 1125 |
| Eco24I | GRGCYC | 1 cut(s) | 1866 |
| Eco32I | GATATC | 1 cut(s) | 274 |
| Eco47I | GGWCC | 5 cut(s) | 163, 652, 802, 1093, 1840 |
| Eco57I | CTGAAG | 2 cut(s) | 1040, 1781 |
| Eco81I | CCTNAGG | 1 cut(s) | 405 |
| Eco88I | CYCGRG | 1 cut(s) | 1752 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 659 |
| EcoO109I | RGGNCCY | 3 cut(s) | 145, 802, 1407 |
| EcoRI | GAATTC | 1 cut(s) | 931 |
| EcoRII | CCWGG | 5 cut(s) | 197, 586, 1006, 1137, 1390 |
| EcoRV | GATATC | 1 cut(s) | 274 |
| EcoT14I | CCWWGG | 2 cut(s) | 141, 231 |
| EcoT22I | ATGCAT | 1 cut(s) | 1615 |
| EcoT38I | GRGCYC | 1 cut(s) | 1866 |
| EgeI | GGCGCC | 2 cut(s) | 193, 325 |
| EheI | GGCGCC | 2 cut(s) | 193, 325 |
| ErhI | CCWWGG | 2 cut(s) | 141, 231 |
| FaeI | CATG | 7 cut(s) | 81, 121, 268, 610, 827, 1034, 1082 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 224, 256, 2093, 2125 |
| FatI | CATG | 7 cut(s) | 77, 117, 264, 606, 823, 1030, 1078 |
| FauI | CCCGC | 2 cut(s) | 135, 188 |
| FblI | GTMKAC | 2 cut(s) | 1146, 1947 |
| Fnu4HI | GCNGC | 5 cut(s) | 106, 307, 327, 421, 1290 |
| FokI | GGATG | 4 cut(s) | 422, 623, 1171, 2054 |
| FriOI | GRGCYC | 1 cut(s) | 1866 |
| Fsp4HI | GCNGC | 5 cut(s) | 106, 307, 327, 421, 1290 |
| FspBI | CTAG | 6 cut(s) | 453, 896, 936, 1367, 1806, 1875 |
| GlaI | GCGC | 8 cut(s) | 158, 193, 245, 300, 325, 924, 1215, 1217 |
| GluI | GCNGC | 5 cut(s) | 106, 307, 327, 421, 1290 |
| GsaI | CCCAGC | 2 cut(s) | 1863, 2160 |
| HaeII | RGCGCY | 2 cut(s) | 195, 327 |
| HaeIII | GGCC | 7 cut(s) | 146, 510, 1125, 1206, 1400, 1409, 1864 |
| HapII | CCGG | 4 cut(s) | 189, 336, 342, 1745 |
| HgaI | GACGC | 2 cut(s) | 245, 1967 |
| HhaI | GCGC | 8 cut(s) | 159, 194, 246, 301, 326, 925, 1216, 1218 |
| Hin1I | GRCGYC | 3 cut(s) | 192, 237, 324 |
| Hin1II | CATG | 7 cut(s) | 81, 121, 268, 610, 827, 1034, 1082 |
| Hin6I | GCGC | 8 cut(s) | 157, 192, 244, 299, 324, 923, 1214, 1216 |
| HinP1I | GCGC | 8 cut(s) | 157, 192, 244, 299, 324, 923, 1214, 1216 |
| HincII | GTYRAC | 1 cut(s) | 1147 |
| HindII | GTYRAC | 1 cut(s) | 1147 |
| HindIII | AAGCTT | 1 cut(s) | 2196 |
| HinfI | GANTC | 8 cut(s) | 86, 349, 400, 1621, 1649, 2051, 2057, 2219 |
| HpaII | CCGG | 4 cut(s) | 189, 336, 342, 1745 |
| HphI | GGTGA | 3 cut(s) | 1658, 1948, 2141 |
| Hpy166II | GTNNAC | 8 cut(s) | 163, 258, 635, 965, 1147, 1508, 1840, 1948 |
| Hpy8I | GTNNAC | 8 cut(s) | 163, 258, 635, 965, 1147, 1508, 1840, 1948 |
| Hpy99I | CGWCG | 1 cut(s) | 1983 |
| HpyAV | CCTTC | 9 cut(s) | 184, 541, 688, 793, 1223, 1712, 1804, 1993, 2140 |
| HpyCH4III | ACNGT | 3 cut(s) | 1093, 1572, 2214 |
| HpyCH4IV | ACGT | 4 cut(s) | 461, 961, 1418, 1464 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 189, 298, 704, 839, 1406, 1856, 1861, 1980 |
| HpyF3I | CTNAG | 8 cut(s) | 405, 726, 791, 815, 1258, 1704, 1925, 2055 |
| HpySE526I | ACGT | 4 cut(s) | 461, 961, 1418, 1464 |
| Hsp92I | GRCGYC | 3 cut(s) | 192, 237, 324 |
| Hsp92II | CATG | 7 cut(s) | 81, 121, 268, 610, 827, 1034, 1082 |
| HspAI | GCGC | 8 cut(s) | 157, 192, 244, 299, 324, 923, 1214, 1216 |
| KasI | GGCGCC | 2 cut(s) | 191, 323 |
| KroI | GCCGGC | 2 cut(s) | 188, 1744 |
| KroNI | GCCGGC | 2 cut(s) | 190, 1746 |
| Kzo9I | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| LguI | GCTCTTC | 1 cut(s) | 2061 |
| LmnI | GCTCC | 6 cut(s) | 113, 344, 550, 909, 1005, 1633 |
| Lsp1109I | GCAGC | 1 cut(s) | 432 |
| LweI | GCATC | 9 cut(s) | 934, 1193, 1242, 1276, 1320, 1505, 1684, 2017, 2197 |
| MabI | ACCWGGT | 1 cut(s) | 197 |
| MaeI | CTAG | 6 cut(s) | 453, 896, 936, 1367, 1806, 1875 |
| MaeII | ACGT | 4 cut(s) | 461, 961, 1418, 1464 |
| MalI | GATC | 9 cut(s) | 83, 669, 780, 1237, 1526, 1781, 1872, 1971, 2086 |
| MboI | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| MflI | RGATCY | 2 cut(s) | 778, 1524 |
| MhlI | GDGCHC | 1 cut(s) | 1866 |
| MlsI | TGGCCA | 1 cut(s) | 1400 |
| MluNI | TGGCCA | 1 cut(s) | 1400 |
| Mly113I | GGCGCC | 2 cut(s) | 192, 324 |
| MlyI | GAGTC | 3 cut(s) | 343, 1615, 2066 |
| MmeI | TCCRAC | 4 cut(s) | 135, 461, 1027, 2040 |
| Mox20I | TGGCCA | 1 cut(s) | 1400 |
| Mph1103I | ATGCAT | 1 cut(s) | 1615 |
| MreI | CGCCGGCG | 1 cut(s) | 188 |
| MroNI | GCCGGC | 2 cut(s) | 188, 1744 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1911 |
| MscI | TGGCCA | 1 cut(s) | 1400 |
| MseI | TTAA | 3 cut(s) | 473, 690, 993 |
| MslI | CAYNNNNRTG | 2 cut(s) | 263, 609 |
| Msp20I | TGGCCA | 1 cut(s) | 1400 |
| MspI | CCGG | 4 cut(s) | 189, 336, 342, 1745 |
| MspR9I | CCNGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| Mva1269I | GAATGC | 1 cut(s) | 1615 |
| MvaI | CCWGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| MvnI | CGCG | 4 cut(s) | 28, 159, 299, 1216 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 189, 298, 704, 839, 1406, 1856, 1861, 1980 |
| NaeI | GCCGGC | 2 cut(s) | 190, 1746 |
| NarI | GGCGCC | 2 cut(s) | 192, 324 |
| NdeII | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| NgoMIV | GCCGGC | 2 cut(s) | 188, 1744 |
| NlaIII | CATG | 7 cut(s) | 81, 121, 268, 610, 827, 1034, 1082 |
| NlaIV | GGNNCC | 9 cut(s) | 109, 147, 165, 193, 325, 340, 804, 1842, 1864 |
| NmeAIII | GCCGAG | 1 cut(s) | 300 |
| NsiI | ATGCAT | 1 cut(s) | 1615 |
| NspV | TTCGAA | 1 cut(s) | 1684 |
| PagI | TCATGA | 1 cut(s) | 1078 |
| PauI | GCGCGC | 1 cut(s) | 1214 |
| PceI | AGGCCT | 1 cut(s) | 1125 |
| PciSI | GCTCTTC | 1 cut(s) | 2061 |
| PctI | GAATGC | 1 cut(s) | 1615 |
| PdiI | GCCGGC | 2 cut(s) | 190, 1746 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1911 |
| PfeI | GAWTC | 5 cut(s) | 86, 400, 1649, 2051, 2219 |
| PfoI | TCCNGGA | 1 cut(s) | 586 |
| PkrI | GCNGC | 5 cut(s) | 107, 308, 328, 422, 1291 |
| Ple19I | CGATCG | 1 cut(s) | 2087 |
| PleI | GAGTC | 3 cut(s) | 343, 1615, 2065 |
| PluTI | GGCGCC | 2 cut(s) | 195, 327 |
| PpsI | GAGTC | 3 cut(s) | 343, 1615, 2065 |
| Ppu21I | YACGTR | 2 cut(s) | 962, 1419 |
| PpuMI | RGGWCCY | 1 cut(s) | 802 |
| Psp1406I | AACGTT | 1 cut(s) | 461 |
| Psp5II | RGGWCCY | 1 cut(s) | 802 |
| Psp6I | CCWGG | 5 cut(s) | 197, 586, 1006, 1137, 1390 |
| PspFI | CCCAGC | 2 cut(s) | 1859, 2156 |
| PspGI | CCWGG | 5 cut(s) | 197, 586, 1006, 1137, 1390 |
| PspN4I | GGNNCC | 9 cut(s) | 109, 147, 165, 193, 325, 340, 804, 1842, 1864 |
| PspOMI | GGGCCC | 1 cut(s) | 1862 |
| PspPI | GGNCC | 9 cut(s) | 145, 163, 652, 802, 1093, 1407, 1840, 1862, 1863 |
| PspPPI | RGGWCCY | 1 cut(s) | 802 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 555, 587 |
| PsuI | RGATCY | 2 cut(s) | 778, 1524 |
| PteI | GCGCGC | 1 cut(s) | 1214 |
| PvuI | CGATCG | 1 cut(s) | 2087 |
| RsaI | GTAC | 4 cut(s) | 257, 812, 1376, 1421 |
| RsaNI | GTAC | 4 cut(s) | 256, 811, 1375, 1420 |
| RseI | CAYNNNNRTG | 2 cut(s) | 263, 609 |
| SalI | GTCGAC | 1 cut(s) | 1145 |
| SapI | GCTCTTC | 1 cut(s) | 2061 |
| SaqAI | TTAA | 3 cut(s) | 473, 690, 993 |
| SatI | GCNGC | 5 cut(s) | 106, 307, 327, 421, 1290 |
| Sau3AI | GATC | 9 cut(s) | 81, 667, 778, 1235, 1524, 1779, 1870, 1969, 2084 |
| Sau96I | GGNCC | 9 cut(s) | 145, 163, 652, 802, 1093, 1407, 1840, 1862, 1863 |
| SchI | GAGTC | 3 cut(s) | 343, 1615, 2066 |
| ScrFI | CCNGG | 5 cut(s) | 199, 588, 1008, 1139, 1392 |
| SduI | GDGCHC | 1 cut(s) | 1866 |
| SexAI | ACCWGGT | 1 cut(s) | 197 |
| SfaNI | GCATC | 9 cut(s) | 934, 1193, 1242, 1276, 1320, 1505, 1684, 2017, 2197 |
| SfcI | CTRYAG | 1 cut(s) | 641 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1406 |
| SfoI | GGCGCC | 2 cut(s) | 193, 325 |
| SfuI | TTCGAA | 1 cut(s) | 1684 |
| SgrAI | CRCCGGYG | 1 cut(s) | 188 |
| SinI | GGWCC | 5 cut(s) | 163, 652, 802, 1093, 1840 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 263, 609 |
| SmlI | CTYRAG | 1 cut(s) | 1274 |
| SmoI | CTYRAG | 1 cut(s) | 1274 |
| SseBI | AGGCCT | 1 cut(s) | 1125 |
| SsiI | CCGC | 8 cut(s) | 28, 105, 128, 181, 306, 327, 368, 1290 |
| SspDI | GGCGCC | 2 cut(s) | 191, 323 |
| SspMI | CTAG | 6 cut(s) | 453, 896, 936, 1367, 1806, 1875 |
| StuI | AGGCCT | 1 cut(s) | 1125 |
| StyD4I | CCNGG | 5 cut(s) | 197, 586, 1006, 1137, 1390 |
| StyI | CCWWGG | 2 cut(s) | 141, 231 |
| TaaI | ACNGT | 3 cut(s) | 1093, 1572, 2214 |
| TaiI | ACGT | 4 cut(s) | 464, 964, 1421, 1467 |
| TaqII | GACCGA | 1 cut(s) | 284 |
| TatI | WGTACW | 1 cut(s) | 255 |
| TauI | GCSGC | 4 cut(s) | 108, 309, 329, 1292 |
| TfiI | GAWTC | 5 cut(s) | 86, 400, 1649, 2051, 2219 |
| Tru1I | TTAA | 3 cut(s) | 473, 690, 993 |
| Tru9I | TTAA | 3 cut(s) | 473, 690, 993 |
| TscAI | CASTG | 3 cut(s) | 705, 1351, 1873 |
| TseI | GCWGC | 1 cut(s) | 420 |
| TspGWI | ACGGA | 1 cut(s) | 1517 |
| TspRI | CASTG | 3 cut(s) | 705, 1351, 1873 |
| VpaK11BI | GGWCC | 5 cut(s) | 163, 652, 802, 1093, 1840 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 659 |
| XapI | RAATTY | 3 cut(s) | 622, 931, 1910 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 157, 1561 |
| XmiI | GTMKAC | 2 cut(s) | 1146, 1947 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1911 |
| XspI | CTAG | 6 cut(s) | 453, 896, 936, 1367, 1806, 1875 |
| Zsp2I | ATGCAT | 1 cut(s) | 1615 |