Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001825.1

Orthogroup ID

OG0001627

Physical Location & Seq

Genomic Coordinates Reverse (-)

21012 .. 23618

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001825.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ctgggccgacacctggctttgcggttggtcgagatcggtgttcatgacgtgttctccgtccccggcgacttcaacttgactctcttggaccacctgatcgccgagctggagctcaacctcataagctgctgcaacgagctcaacgccgagtacgccgccaacggctacacgagcgccaggggtgtcagcgcgtgtgtcgtcactttcacgatgggtgggctcagcgtcttgaacgctatcgccgatgcttgcagtaagaacttgccggtgatttgtattgtcggtgggagagatcaattgcgagagatcaattcccagtcttgtcaacgtcttttgaatctggttgttggccagaacctcaagcttttggttcgtgagtgttttgctgagaaagtagctctgctggaggatttgattccctacagcgacggtgcctgggcagtgcgtgtaccccgcaatgggggcaataaattcagacccctgaatccggtcaccagtctggcgaccggatttcggattccggtgaccggctgccggattaggatgactggttgccgaattcccgtcaccggagtccgcggccagccactggtcaccgatgtccagcaaggtctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

205

Amino Acids

22.11

Weight (kDa)

8.15

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54960
fragaria_vesca	FvH4_3g08040 FvH4_3g08040 FvH4_3g39060 FvH4_3g39060
malus_domestica	MD03G1065100.v1.1 MD07G1137600.v1.1 MD10G1283500.v1.1 MD11G1069100.v1.1
prunus_persica	Prupe.4G058300_v2.0.a1 Prupe.6G054000_v2.0.a1 Prupe.6G054000_v2.0.a1
pyrus_communis	pycom03g05210 pycom10g23650 pycom11g05750 pycom11g05760
rosa_chinensis	RchiOBHm_Chr5g0010191 RchiOBHm_Chr5g0010251 RchiOBHm_Chr5g0070371
rosa_laevigata	RLG00000031729 RLG00000031787 RLG00000036128
rosa_multiflora	Rmu_sc0000109.1_g000009 Rmu_sc0000818.1_g000009 Rmu_sc0001825.1_g000004 Rmu_sc0006163.1_g000002 Rmu_sc0007961.1_g000016 Rmu_sc0021253.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066000
rosa_rugosa	Rorug02G0411100 Rorug04G0449500 Rorug04G0453100 Rorug05G0405300 Rorug05G0405300 Rorug05G0405400
rosa_samantha	Rh3DG356500 Rh5AG080500 Rh5AG460900 Rh5BG075100 Rh5BG080000 Rh5BG479200 Rh5CG088800 Rh5CG503400 Rh5DG076000 Rh5DG080100 Rh5DG080200 Rh5DG491100
rosa_wichuraiana	Rw5G007460 Rw5G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccII	CGCG	2 cut(s)	191, 579
AciI	CCGC	5 cut(s)	22, 156, 454, 577, 579
AcoI	YGGCCR	2 cut(s)	349, 580
AcsI	RAATTY	2 cut(s)	470, 558
AfaI	GTAC	2 cut(s)	152, 450
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	73, 232, 337
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	3 cut(s)	12, 176, 434
AluBI	AGCT	6 cut(s)	106, 112, 126, 139, 364, 398
AluI	AGCT	6 cut(s)	106, 112, 126, 139, 364, 398
Alw21I	GWGCWC	2 cut(s)	114, 141
AlwNI	CAGNNNCTG	1 cut(s)	589
AoxI	GGCC	3 cut(s)	4, 349, 580
ApeKI	GCWGC	3 cut(s)	126, 129, 531
ApoI	RAATTY	2 cut(s)	470, 558
AspLEI	GCGC	2 cut(s)	176, 191
AspS9I	GGNCC	2 cut(s)	4, 88
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	5 cut(s)	280, 484, 535, 559, 586
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	3 cut(s)	114, 141, 222
BauI	CACGAG	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	114, 141
BbvI	GCAGC	3 cut(s)	113, 116, 518
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	3 cut(s)	14, 178, 436
BcnI	CCSGG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	421
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	5 cut(s)	127, 130, 156, 532, 580
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	5 cut(s)	128, 131, 157, 533, 581
Bme1390I	CCNGG	4 cut(s)	14, 63, 178, 436
Bme18I	GGWCC	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	4, 88
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	4 cut(s)	14, 63, 178, 436
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	310
BpmI	CTGGAG	2 cut(s)	128, 425
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	61, 177, 435, 577
BsaWI	WCCGGW	4 cut(s)	487, 506, 520, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse118I	RCCGGY	2 cut(s)	265, 527
Bse1I	ACTGG	4 cut(s)	316, 495, 553, 594
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	3 cut(s)	14, 178, 436
BseDI	CCNNGG	4 cut(s)	61, 177, 435, 577
BseGI	GGATG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	235, 378
BseNI	ACTGG	4 cut(s)	316, 495, 553, 594
BseXI	GCAGC	3 cut(s)	113, 116, 518
Bsh1236I	CGCG	2 cut(s)	191, 579
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	6, 351, 582
BshNI	GGYRCC	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	2 cut(s)	114, 141
BsiSI	CCGG	8 cut(s)	63, 266, 488, 507, 521, 528, 535, 570
BslFI	GGGAC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	3 cut(s)	6, 351, 582
Bsp1286I	GDGCHC	3 cut(s)	114, 141, 222
Bsp143I	GATC	4 cut(s)	33, 96, 292, 306
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	5 cut(s)	22, 156, 454, 577, 579
BspANI	GGCC	3 cut(s)	6, 351, 582
BspCNI	CTCAG	2 cut(s)	234, 379
BspFNI	CGCG	2 cut(s)	191, 579
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	2 cut(s)	265, 527
BsrI	ACTGG	4 cut(s)	316, 495, 553, 594
BssAI	RCCGGY	2 cut(s)	265, 527
BssECI	CCNNGG	4 cut(s)	61, 177, 435, 577
BssMI	GATC	4 cut(s)	33, 96, 292, 306
BssSI	CACGAG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	169
Bst2UI	CCWGG	3 cut(s)	14, 178, 436
Bst4CI	ACNGT	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	250, 584
BstDEI	CTNAG	2 cut(s)	221, 387
BstDSI	CCRYGG	1 cut(s)	577
BstEII	GGTNACC	3 cut(s)	490, 523, 592
BstF5I	GGATG	1 cut(s)	549
BstFNI	CGCG	2 cut(s)	191, 579
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	176, 191
BstKTI	GATC	4 cut(s)	36, 99, 295, 309
BstMBI	GATC	4 cut(s)	33, 96, 292, 306
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 171, 462
BstNI	CCWGG	3 cut(s)	14, 178, 436
BstPI	GGTNACC	3 cut(s)	490, 523, 592
BstSCI	CCNGG	4 cut(s)	12, 61, 176, 434
BstSFI	CTRYAG	1 cut(s)	421
BstUI	CGCG	2 cut(s)	191, 579
BstV1I	GCAGC	3 cut(s)	113, 116, 518
BsuRI	GGCC	3 cut(s)	6, 351, 582
BtgI	CCRYGG	1 cut(s)	577
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	549
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	447, 587
Cac8I	GCNNGC	2 cut(s)	250, 584
CaiI	CAGNNNCTG	1 cut(s)	589
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	2 cut(s)	176, 191
Cfr10I	RCCGGY	2 cut(s)	265, 527
Cfr13I	GGNCC	2 cut(s)	4, 88
Cfr42I	CCGCGG	1 cut(s)	580
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	151, 449
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	2 cut(s)	151, 449
DdeI	CTNAG	2 cut(s)	221, 387
DpnI	GATC	4 cut(s)	35, 98, 294, 308
DpnII	GATC	4 cut(s)	33, 96, 292, 306
EaeI	YGGCCR	2 cut(s)	349, 580
Ecl136II	GAGCTC	2 cut(s)	112, 139
Eco24I	GRGCYC	3 cut(s)	114, 141, 222
Eco47I	GGWCC	1 cut(s)	88
Eco53kI	GAGCTC	2 cut(s)	112, 139
Eco91I	GGTNACC	3 cut(s)	490, 523, 592
EcoICRI	GAGCTC	2 cut(s)	112, 139
EcoO65I	GGTNACC	3 cut(s)	490, 523, 592
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	3 cut(s)	12, 176, 434
EcoT38I	GRGCYC	3 cut(s)	114, 141, 222
FaeI	CATG	1 cut(s)	47
FaiI	YATR	2 cut(s)	45, 122
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	43
FauI	CCCGC	1 cut(s)	461
Fnu4HI	GCNGC	5 cut(s)	127, 130, 156, 532, 580
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	3 cut(s)	114, 141, 222
Fsp4HI	GCNGC	5 cut(s)	127, 130, 156, 532, 580
GlaI	GCGC	2 cut(s)	175, 190
GluI	GCNGC	5 cut(s)	127, 130, 156, 532, 580
GsuI	CTGGAG	2 cut(s)	128, 425
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	6, 351, 582
HapII	CCGG	8 cut(s)	63, 266, 488, 507, 521, 528, 535, 570
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	176, 191
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	2 cut(s)	174, 189
HinP1I	GCGC	2 cut(s)	174, 189
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	6 cut(s)	79, 337, 415, 484, 517, 573
HpaII	CCGG	8 cut(s)	63, 266, 488, 507, 521, 528, 535, 570
HphI	GGTGA	5 cut(s)	280, 484, 535, 559, 586
Hpy166II	GTNNAC	2 cut(s)	326, 449
Hpy188I	TCNGA	3 cut(s)	476, 516, 617
Hpy188III	TCNNGA	5 cut(s)	31, 44, 208, 229, 374
Hpy8I	GTNNAC	2 cut(s)	326, 449
Hpy99I	CGWCG	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	2 cut(s)	48, 328
HpyCH4V	TGCA	2 cut(s)	132, 252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 171, 462
HpyF3I	CTNAG	2 cut(s)	221, 387
HpySE526I	ACGT	2 cut(s)	48, 328
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	2 cut(s)	174, 189
KspI	CCGCGG	1 cut(s)	580
Kzo9I	GATC	4 cut(s)	33, 96, 292, 306
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	3 cut(s)	113, 116, 518
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	2 cut(s)	48, 328
MaeIII	GTNAC	5 cut(s)	199, 490, 523, 565, 592
MalI	GATC	4 cut(s)	35, 98, 294, 308
MboI	GATC	4 cut(s)	33, 96, 292, 306
MfeI	CAATTG	1 cut(s)	296
MhlI	GDGCHC	3 cut(s)	114, 141, 222
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	4 cut(s)	296, 310, 470, 558
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	73, 582
MnlI	CCTC	3 cut(s)	128, 368, 400
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	8 cut(s)	63, 266, 488, 507, 521, 528, 535, 570
MspR9I	CCNGG	4 cut(s)	14, 63, 178, 436
MunI	CAATTG	1 cut(s)	296
MvaI	CCWGG	3 cut(s)	14, 178, 436
MvnI	CGCG	2 cut(s)	191, 579
MwoI	GCNNNNNNNGC	3 cut(s)	152, 171, 462
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	4 cut(s)	33, 96, 292, 306
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	2 cut(s)	127, 172
NmuCI	GTSAC	5 cut(s)	199, 490, 523, 565, 592
PagI	TCATGA	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 240
PfeI	GAWTC	4 cut(s)	337, 415, 484, 517
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	5 cut(s)	128, 131, 157, 533, 581
PleI	GAGTC	2 cut(s)	73, 581
PpsI	GAGTC	2 cut(s)	73, 581
Psp124BI	GAGCTC	2 cut(s)	114, 141
Psp6I	CCWGG	3 cut(s)	12, 176, 434
PspEI	GGTNACC	3 cut(s)	490, 523, 592
PspGI	CCWGG	3 cut(s)	12, 176, 434
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	4, 88
PstNI	CAGNNNCTG	1 cut(s)	589
RsaI	GTAC	2 cut(s)	152, 450
RsaNI	GTAC	2 cut(s)	151, 449
SacI	GAGCTC	2 cut(s)	114, 141
SacII	CCGCGG	1 cut(s)	580
SatI	GCNGC	5 cut(s)	127, 130, 156, 532, 580
Sau3AI	GATC	4 cut(s)	33, 96, 292, 306
Sau96I	GGNCC	2 cut(s)	4, 88
SchI	GAGTC	2 cut(s)	73, 582
ScrFI	CCNGG	4 cut(s)	14, 63, 178, 436
SduI	GDGCHC	3 cut(s)	114, 141, 222
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	421
Sfr303I	CCGCGG	1 cut(s)	580
SgrBI	CCGCGG	1 cut(s)	580
SinI	GGWCC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	4 cut(s)	296, 310, 470, 558
SsiI	CCGC	5 cut(s)	22, 156, 454, 577, 579
SstI	GAGCTC	2 cut(s)	114, 141
StyD4I	CCNGG	4 cut(s)	12, 61, 176, 434
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	2 cut(s)	51, 331
TaqI	TCGA	1 cut(s)	30
TasI	AATT	4 cut(s)	296, 310, 470, 558
TauI	GCSGC	2 cut(s)	158, 582
TfiI	GAWTC	4 cut(s)	337, 415, 484, 517
TscAI	CASTG	2 cut(s)	447, 594
TseFI	GTSAC	5 cut(s)	199, 490, 523, 565, 592
TseI	GCWGC	3 cut(s)	126, 129, 531
Tsp45I	GTSAC	5 cut(s)	199, 490, 523, 565, 592
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	447, 594
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	2 cut(s)	470, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.