RLG00000031787

Belongs to the TPP enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001627
Physical Location & Seq
Reverse (-)
8229550 .. 8232707
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031787

Sequence Viewer

Length: 585 bp
ATGGCACAAACTTGTAATTTGCCTGCAAGTAATTTGGGTGTACCAATTCCCTTCTTTCTTGCGCCGAACGTAAGCAATCAATTAGGGTTGGAAGCAGCAGCTGAAGGCTTGAAGCAACGTACTGCTGCTTTCCTAAACGAGGCAGTAAAGCCGAGAGTAGTGAAGGCCTTTGTGGAGCTTGCAGATCAAATGAAAATTGGGACTTATTCGGGTGTTGAACCCCGGCCTCTGAAAGTTCAGAAAGATGAACCTCTTAGAGTCAATGTTCTCTTTAAGCACATTCAGGATATTGTCAGGCCGGACACTGCCATAATTGCTGAAACTGGAGACTCCATCAGTGGCGGAGCCAGGTATGAATTCCAAATGCAGTATGATCTATTGGATGGTCAGTGGGTGCTACTCTCGGCTGCACTCAGGGTACGTACTGAGGACTTAACTGAAGCAATTGCAAAAGCAACGGGGGAGCAGAAGTATAGGTTATGCTTCATCGAAGTTTTTGTGCTGAAAGATGACACTAGCAAAGAGCTTCTGGAATGGGGATCCCGAATTTCAGCTGCTAACAGCCGACTTCCAAATCCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130
Pfam Domains
Protein Families
TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

195

Amino Acids

21.44

Weight (kDa)

5.56

Isoelectric Point (pI)

24.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 342
AclWI GGATC 2 cut(s) 534, 547
AcsI RAATTY 2 cut(s) 356, 546
AcuI CTGAAG 2 cut(s) 123, 459
AfaI GTAC 4 cut(s) 42, 121, 420, 424
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 112, 218
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 4 cut(s) 101, 178, 526, 554
AluI AGCT 4 cut(s) 101, 178, 526, 554
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 2 cut(s) 534, 547
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 3 cut(s) 165, 224, 296
ApeKI GCWGC 5 cut(s) 95, 98, 125, 407, 554
ApoI RAATTY 2 cut(s) 356, 546
AspLEI GCGC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 223
BamHI GGATCC 1 cut(s) 539
BbvI GCAGC 5 cut(s) 107, 110, 112, 394, 541
BccI CCATC 2 cut(s) 341, 377
BciT130I CCWGG 1 cut(s) 349
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 1 cut(s) 516
BisI GCNGC 5 cut(s) 96, 99, 126, 408, 555
BlsI GCNGC 5 cut(s) 97, 100, 127, 409, 556
Bme1390I CCNGG 2 cut(s) 223, 349
BmiI GGNNCC 2 cut(s) 346, 541
BmrFI CCNGG 2 cut(s) 223, 349
BpmI CTGGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 417, 427
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 5 cut(s) 107, 110, 112, 394, 541
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 3 cut(s) 167, 226, 298
BsiSI CCGG 2 cut(s) 223, 299
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 3 cut(s) 167, 226, 298
Bsp143I GATC 3 cut(s) 184, 373, 539
BspACI CCGC 1 cut(s) 342
BspANI GGCC 3 cut(s) 167, 226, 298
BspCNI CTCAG 2 cut(s) 418, 426
BspLI GGNNCC 2 cut(s) 346, 541
BspPI GGATC 2 cut(s) 534, 547
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 3 cut(s) 184, 373, 539
Bst2UI CCWGG 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 24, 180
BstDEI CTNAG 4 cut(s) 254, 413, 426, 579
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 388
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 3 cut(s) 187, 376, 542
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 3 cut(s) 184, 373, 539
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 221, 347
BstSNI TACGTA 1 cut(s) 422
BstV1I GCAGC 5 cut(s) 107, 110, 112, 394, 541
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
BsuRI GGCC 3 cut(s) 167, 226, 298
BtsCI GGATG 1 cut(s) 388
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 343, 395
Cac8I GCNNGC 2 cut(s) 24, 180
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 64
Csp6I GTAC 4 cut(s) 41, 120, 419, 423
CviQI GTAC 4 cut(s) 41, 120, 419, 423
DdeI CTNAG 4 cut(s) 254, 413, 426, 579
DpnI GATC 3 cut(s) 186, 375, 541
DpnII GATC 3 cut(s) 184, 373, 539
EciI GGCGGA 1 cut(s) 357
Eco105I TACGTA 1 cut(s) 422
Eco147I AGGCCT 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 123, 459
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 347
FaiI YATR 5 cut(s) 311, 354, 372, 474, 481
FaqI GGGAC 1 cut(s) 214
Fnu4HI GCNGC 5 cut(s) 96, 99, 126, 408, 555
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 5 cut(s) 96, 99, 126, 408, 555
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 63
GluI GCNGC 5 cut(s) 96, 99, 126, 408, 555
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 3 cut(s) 167, 226, 298
HapII CCGG 2 cut(s) 223, 299
HhaI GCGC 1 cut(s) 64
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 2 cut(s) 258, 329
HpaII CCGG 2 cut(s) 223, 299
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 231, 240
Hpy188III TCNNGA 3 cut(s) 284, 530, 543
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 61, 98, 157
HpyCH4IV ACGT 3 cut(s) 69, 118, 421
HpyCH4V TGCA 5 cut(s) 26, 182, 367, 410, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 4 cut(s) 254, 413, 426, 579
HpySE526I ACGT 3 cut(s) 69, 118, 421
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 3 cut(s) 184, 373, 539
LmnI GCTCC 3 cut(s) 175, 344, 463
Lsp1109I GCAGC 5 cut(s) 107, 110, 112, 394, 541
MaeI CTAG 1 cut(s) 516
MaeII ACGT 3 cut(s) 69, 118, 421
MalI GATC 3 cut(s) 186, 375, 541
MboI GATC 3 cut(s) 184, 373, 539
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 1 cut(s) 539
MluCI AATT 9 cut(s) 16, 31, 45, 80, 195, 312, 356, 444, 546
MlyI GAGTC 2 cut(s) 267, 323
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 4 cut(s) 133, 237, 261, 421
MseI TTAA 2 cut(s) 273, 434
MspA1I CMGCKG 2 cut(s) 101, 554
MspI CCGG 2 cut(s) 223, 299
MspR9I CCNGG 2 cut(s) 223, 349
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 1 cut(s) 223
NdeII GATC 3 cut(s) 184, 373, 539
NlaIV GGNNCC 2 cut(s) 346, 541
NmeAIII GCCGAG 2 cut(s) 177, 383
PceI AGGCCT 1 cut(s) 167
PkrI GCNGC 5 cut(s) 97, 100, 127, 409, 556
PleI GAGTC 2 cut(s) 266, 323
PpsI GAGTC 2 cut(s) 266, 323
Ppu21I YACGTR 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 346, 541
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 539
PvuII CAGCTG 2 cut(s) 101, 554
RsaI GTAC 4 cut(s) 42, 121, 420, 424
RsaNI GTAC 4 cut(s) 41, 120, 419, 423
SaqAI TTAA 2 cut(s) 273, 434
SatI GCNGC 5 cut(s) 96, 99, 126, 408, 555
Sau3AI GATC 3 cut(s) 184, 373, 539
SchI GAGTC 2 cut(s) 267, 323
ScrFI CCNGG 2 cut(s) 223, 349
SnaBI TACGTA 1 cut(s) 422
Sse9I AATT 9 cut(s) 16, 31, 45, 80, 195, 312, 356, 444, 546
SseBI AGGCCT 1 cut(s) 167
SsiI CCGC 1 cut(s) 342
SspMI CTAG 1 cut(s) 516
StuI AGGCCT 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 221, 347
TaiI ACGT 3 cut(s) 72, 121, 424
TaqI TCGA 1 cut(s) 489
TasI AATT 9 cut(s) 16, 31, 45, 80, 195, 312, 356, 444, 546
Tru1I TTAA 2 cut(s) 273, 434
Tru9I TTAA 2 cut(s) 273, 434
TscAI CASTG 3 cut(s) 310, 343, 395
TseI GCWGC 5 cut(s) 95, 98, 125, 407, 554
TspDTI ATGAA 4 cut(s) 206, 261, 369, 475
TspRI CASTG 3 cut(s) 310, 343, 395
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 2 cut(s) 356, 546
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.