Rh5DG080200

Belongs to the TPP enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001627
Physical Location & Seq
Reverse (-)
7020573 .. 7021306
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG080200.1

Sequence Viewer

Length: 357 bp
ATGGGTGACTTCTTCAGTGCATTGGCCAAGAAGCTGAAGAGTAACAGTACTGGTATGGAGAATTACTGCATAATTTTCGTTCCCCCAGGAGCCCGGCCTCTGAAAGTTCAGAAAGATGAACCTCTTAGAGTCAATGTTCTCTTTAAGCACATTCAGGATATTGTCAGGCCGGACACTGCCATAATTGCTGAAACTGGAGACTCCATGGTTCAATTGTCAGAAGCTCCGCCTCCCTGCTATATATCGAGCACAACTGTTTTGGGTGCTACTCTCGGCTGTACTCAGGGTGCGAAAGATAAACGTGTAATTGCTTGCATTGGTGATTTGAATTTCCAGGTAGTATTTCCCCTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130
Pfam Domains
Protein Families
TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

118

Amino Acids

12.78

Weight (kDa)

7.64

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 49, 280
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 2 cut(s) 212, 328
AjnI CCWGG 2 cut(s) 85, 333
AluBI AGCT 2 cut(s) 34, 224
AluI AGCT 2 cut(s) 34, 224
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 192
AoxI GGCC 3 cut(s) 24, 95, 167
ApoI RAATTY 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 17, 332
BalI TGGCCA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 2 cut(s) 87, 335
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 192
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 87, 94, 335
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 3 cut(s) 87, 94, 335
BpmI CTGGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 85, 204
Bse1I ACTGG 2 cut(s) 55, 199
BseBI CCWGG 2 cut(s) 87, 335
BseDI CCNNGG 2 cut(s) 85, 204
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 55, 199
BshFI GGCC 3 cut(s) 26, 97, 169
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 94, 170
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 3 cut(s) 26, 97, 169
Bsp1286I GDGCHC 2 cut(s) 94, 251
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 1 cut(s) 227
BspANI GGCC 3 cut(s) 26, 97, 169
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 91
BsrI ACTGG 2 cut(s) 55, 199
BssECI CCNNGG 2 cut(s) 85, 204
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 87, 335
Bst4CI ACNGT 2 cut(s) 47, 256
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 125, 282
BstDSI CCRYGG 1 cut(s) 204
BstMAI GTCTC 1 cut(s) 192
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 87, 335
BstSCI CCNGG 3 cut(s) 85, 92, 333
BsuRI GGCC 3 cut(s) 26, 97, 169
BtgI CCRYGG 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 22, 174
Cac8I GCNNGC 1 cut(s) 313
Csp6I GTAC 2 cut(s) 48, 279
CviAII CATG 1 cut(s) 205
CviJI RGCY 7 cut(s) 26, 34, 92, 97, 169, 224, 276
CviKI_1 RGCY 7 cut(s) 26, 34, 92, 97, 169, 224, 276
CviQI GTAC 2 cut(s) 48, 279
DdeI CTNAG 2 cut(s) 125, 282
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 85, 333
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 208
FaiI YATR 6 cut(s) 56, 71, 182, 206, 240, 242
FatI CATG 1 cut(s) 204
FriOI GRGCYC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 26, 97, 169
HapII CCGG 2 cut(s) 94, 170
Hin1II CATG 1 cut(s) 208
HinfI GANTC 2 cut(s) 129, 200
HpaII CCGG 2 cut(s) 94, 170
HphI GGTGA 2 cut(s) 17, 332
Hpy188I TCNGA 3 cut(s) 102, 111, 220
Hpy188III TCNNGA 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 47, 256
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 20, 69, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 125, 282
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 1 cut(s) 208
LmnI GCTCC 2 cut(s) 89, 229
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 5, 41
MboII GAAGA 2 cut(s) 4, 49
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 2 cut(s) 94, 251
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 6 cut(s) 61, 72, 183, 212, 306, 328
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 2 cut(s) 138, 194
MnlI CCTC 3 cut(s) 108, 132, 240
Mox20I TGGCCA 1 cut(s) 26
MscI TGGCCA 1 cut(s) 26
MseI TTAA 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 26
MspI CCGG 2 cut(s) 94, 170
MspR9I CCNGG 3 cut(s) 87, 94, 335
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 2 cut(s) 87, 335
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 204
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 5
PleI GAGTC 2 cut(s) 137, 194
PpsI GAGTC 2 cut(s) 137, 194
Psp6I CCWGG 2 cut(s) 85, 333
PspGI CCWGG 2 cut(s) 85, 333
PspN4I GGNNCC 1 cut(s) 91
RsaI GTAC 2 cut(s) 49, 280
RsaNI GTAC 2 cut(s) 48, 279
SaqAI TTAA 1 cut(s) 144
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 138, 194
ScrFI CCNGG 3 cut(s) 87, 94, 335
SduI GDGCHC 2 cut(s) 94, 251
SetI ASST 5 cut(s) 36, 124, 226, 304, 339
Sse9I AATT 6 cut(s) 61, 72, 183, 212, 306, 328
SsiI CCGC 1 cut(s) 227
StyD4I CCNGG 3 cut(s) 85, 92, 333
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 47, 256
TaiI ACGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 245
TasI AATT 6 cut(s) 61, 72, 183, 212, 306, 328
TatI WGTACW 2 cut(s) 47, 278
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 22, 181
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 2 cut(s) 22, 181
XapI RAATTY 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.