Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001627

Physical Location & Seq

Genomic Coordinates Reverse (-)

6812325 .. 6816610

Gene Structure 4286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGAAATGATAGTGTGAGGGTGTTTTTGATGAAATTGAAAGTCCAGAAGTTGTGTTTACTGTTGAAGATGATCCCCGTTGATTTATTTGGAGATCTTAAAATATTACCACGAACAGGTACCAAGGTCAAGGGCAGGAAGGCAAATCGTTCACCTGCCTTTACATGTCCTGATGTTTTTGGTTTTGACATCATCTATGTATTTGAATTTTCGTTCCCCAAGGAACCCCGGCCTCTGAAAGTTCAGAAAGATGAACCTCTTAGAGTCGATGTTCTCTTTAAGCACATTCAGGATATTGTCAGGCCGGACACTGCCATAATTGCTGAAACTGGAGACTCCATGGTTCAATTGTCAGAAGCTCCGCCTCCCTGCTATATATCGAGCACAACTGTTTTGGGTGCTACTCTCGGCTGTACTCAGGGTGCGAAAGATAAACGTGTAATTGCTTGCATTGGTGATGTGAATTTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

157

Amino Acids

17.53

Weight (kDa)

9.16

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54960
fragaria_vesca	FvH4_3g08040 FvH4_3g08040 FvH4_3g39060 FvH4_3g39060
malus_domestica	MD03G1065100.v1.1 MD07G1137600.v1.1 MD10G1283500.v1.1 MD11G1069100.v1.1
prunus_persica	Prupe.4G058300_v2.0.a1 Prupe.6G054000_v2.0.a1 Prupe.6G054000_v2.0.a1
pyrus_communis	pycom03g05210 pycom10g23650 pycom11g05750 pycom11g05760
rosa_chinensis	RchiOBHm_Chr5g0010191 RchiOBHm_Chr5g0010251 RchiOBHm_Chr5g0070371
rosa_laevigata	RLG00000031729 RLG00000031787 RLG00000036128
rosa_multiflora	Rmu_sc0000109.1_g000009 Rmu_sc0000818.1_g000009 Rmu_sc0001825.1_g000004 Rmu_sc0006163.1_g000002 Rmu_sc0007961.1_g000016 Rmu_sc0021253.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066000
rosa_rugosa	Rorug02G0411100 Rorug04G0449500 Rorug04G0453100 Rorug05G0405300 Rorug05G0405300 Rorug05G0405400
rosa_samantha	Rh3DG356500 Rh5AG080500 Rh5AG460900 Rh5BG075100 Rh5BG080000 Rh5BG479200 Rh5CG088800 Rh5CG503400 Rh5DG076000 Rh5DG080100 Rh5DG080200 Rh5DG491100
rosa_wichuraiana	Rw5G007460 Rw5G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	206, 463
AfaI	GTAC	2 cut(s)	121, 415
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	2 cut(s)	164, 436
AgsI	TTSAA	4 cut(s)	40, 67, 206, 347
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	2 cut(s)	230, 302
ApoI	RAATTY	2 cut(s)	206, 463
Asp718I	GGTACC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	144, 467
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BanI	GGYRCC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	386
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	163
BglII	AGATCT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	121, 225
BmrFI	CCNGG	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	123, 219, 227, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	334, 469
BseDI	CCNNGG	4 cut(s)	123, 219, 227, 339
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	334, 469
BshFI	GGCC	2 cut(s)	232, 304
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	2 cut(s)	229, 305
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	232, 304
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	72, 94
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	232, 304
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	121, 225
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	119
BsrI	ACTGG	2 cut(s)	334, 469
BssECI	CCNNGG	4 cut(s)	123, 219, 227, 339
BssMI	GATC	2 cut(s)	72, 94
BssT1I	CCWWGG	3 cut(s)	123, 219, 339
Bst4CI	ACNGT	2 cut(s)	63, 391
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	2 cut(s)	260, 417
BstDSI	CCRYGG	1 cut(s)	339
BstKTI	GATC	2 cut(s)	75, 97
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	2 cut(s)	72, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	232, 304
BtgI	CCRYGG	1 cut(s)	339
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	448
Csp6I	GTAC	2 cut(s)	120, 414
CviAII	CATG	2 cut(s)	165, 340
CviJI	RGCY	4 cut(s)	232, 304, 359, 411
CviKI_1	RGCY	4 cut(s)	232, 304, 359, 411
CviQI	GTAC	2 cut(s)	120, 414
DdeI	CTNAG	2 cut(s)	260, 417
DpnI	GATC	2 cut(s)	74, 96
DpnII	GATC	2 cut(s)	72, 94
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	3 cut(s)	123, 219, 339
EcoT14I	CCWWGG	3 cut(s)	123, 219, 339
ErhI	CCWWGG	3 cut(s)	123, 219, 339
FaeI	CATG	2 cut(s)	168, 343
FaiI	YATR	6 cut(s)	166, 198, 317, 341, 375, 377
FatI	CATG	2 cut(s)	164, 339
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	232, 304
HapII	CCGG	2 cut(s)	229, 305
Hin1II	CATG	2 cut(s)	168, 343
HinfI	GANTC	2 cut(s)	264, 335
HpaII	CCGG	2 cut(s)	229, 305
HphI	GGTGA	2 cut(s)	144, 467
Hpy166II	GTNNAC	2 cut(s)	59, 152
Hpy188I	TCNGA	3 cut(s)	237, 246, 355
Hpy188III	TCNNGA	3 cut(s)	46, 170, 290
Hpy8I	GTNNAC	2 cut(s)	59, 152
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	2 cut(s)	63, 391
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	260, 417
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	168, 343
KpnI	GGTACC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	72, 94
LmnI	GCTCC	1 cut(s)	364
MaeII	ACGT	1 cut(s)	436
MalI	GATC	2 cut(s)	74, 96
MboI	GATC	2 cut(s)	72, 94
MboII	GAAGA	1 cut(s)	79
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	6 cut(s)	35, 206, 318, 347, 441, 463
MlyI	GAGTC	2 cut(s)	273, 329
MnlI	CCTC	4 cut(s)	12, 243, 267, 375
MseI	TTAA	2 cut(s)	99, 279
MspI	CCGG	2 cut(s)	229, 305
MspR9I	CCNGG	1 cut(s)	229
MunI	CAATTG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	320
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	72, 94
NlaIII	CATG	2 cut(s)	168, 343
NlaIV	GGNNCC	2 cut(s)	121, 225
NmeAIII	GCCGAG	1 cut(s)	387
NspI	RCATGY	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	163
PciI	ACATGT	1 cut(s)	164
PleI	GAGTC	2 cut(s)	272, 329
PpsI	GAGTC	2 cut(s)	272, 329
PscI	ACATGT	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	121, 225
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	2 cut(s)	121, 415
RsaNI	GTAC	2 cut(s)	120, 414
SaqAI	TTAA	2 cut(s)	99, 279
Sau3AI	GATC	2 cut(s)	72, 94
SchI	GAGTC	2 cut(s)	273, 329
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	6 cut(s)	121, 129, 157, 259, 361, 439
Sse9I	AATT	6 cut(s)	35, 206, 318, 347, 441, 463
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	3 cut(s)	123, 219, 339
TaaI	ACNGT	2 cut(s)	63, 391
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	267, 380
TasI	AATT	6 cut(s)	35, 206, 318, 347, 441, 463
TatI	WGTACW	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	99, 279
Tru9I	TTAA	2 cut(s)	99, 279
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	47, 267
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	2 cut(s)	206, 463
XceI	RCATGY	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.