Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001627

Physical Location & Seq

Genomic Coordinates Forward (+)

6796992 .. 6797898

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTTCCATTCCCTAACCCAAGCCAGCTCAATAGCTTGAATAACTGCCATGACCTCCGCATCAACAGAGCTAGGAATATCAAGGCTAGAAATACCATCATATTTCTTATCAACAATGGAGGCTATACAATCGAAGTAGAAATTCGTGATGGCCCATACAATGTCATTAAGAACTGGGATTACACTGGACTCGTTGATGCAATCCACAATGCCGAAGGCAAATGCTGGACTACCAAGGTACGTACAGAGGAGGACTCAACTAAAGCAATTGCCAAAGCAACAGGGGAGCACAAGGATAGTTTATGCTTCATCGAAGTTTTTGTGCACAAAGATGACACTAGCAAAGAGCTTCTGGAATGGGGATCCCGAGTTTCAGCTGCCAACAGCCGACCTCCAAATCCAGTAGCGGACCTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

139

Amino Acids

15.62

Weight (kDa)

6.41

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54960
fragaria_vesca	FvH4_3g08040 FvH4_3g08040 FvH4_3g39060 FvH4_3g39060
malus_domestica	MD03G1065100.v1.1 MD07G1137600.v1.1 MD10G1283500.v1.1 MD11G1069100.v1.1
prunus_persica	Prupe.4G058300_v2.0.a1 Prupe.6G054000_v2.0.a1 Prupe.6G054000_v2.0.a1
pyrus_communis	pycom03g05210 pycom10g23650 pycom11g05750 pycom11g05760
rosa_chinensis	RchiOBHm_Chr5g0010191 RchiOBHm_Chr5g0010251 RchiOBHm_Chr5g0070371
rosa_laevigata	RLG00000031729 RLG00000031787 RLG00000036128
rosa_multiflora	Rmu_sc0000109.1_g000009 Rmu_sc0000818.1_g000009 Rmu_sc0001825.1_g000004 Rmu_sc0006163.1_g000002 Rmu_sc0007961.1_g000016 Rmu_sc0021253.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066000
rosa_rugosa	Rorug02G0411100 Rorug04G0449500 Rorug04G0453100 Rorug05G0405300 Rorug05G0405300 Rorug05G0405400
rosa_samantha	Rh3DG356500 Rh5AG080500 Rh5AG460900 Rh5BG075100 Rh5BG080000 Rh5BG479200 Rh5CG088800 Rh5CG503400 Rh5DG076000 Rh5DG080100 Rh5DG080200 Rh5DG491100
rosa_wichuraiana	Rw5G007460 Rw5G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	58, 407
AclWI	GGATC	2 cut(s)	357, 370
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	2 cut(s)	240, 244
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	6 cut(s)	28, 36, 71, 349, 377, 417
AluI	AGCT	6 cut(s)	28, 36, 71, 349, 377, 417
Alw21I	GWGCWC	2 cut(s)	291, 327
Alw44I	GTGCAC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	357, 370
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	1 cut(s)	151
ApaLI	GTGCAC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	152, 409
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	327
BamHI	GGATCC	1 cut(s)	362
Bbv12I	GWGCWC	2 cut(s)	291, 327
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	104, 143
BfaI	CTAG	3 cut(s)	72, 87, 339
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	152, 409
BmiI	GGNNCC	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	69, 187
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu10I	CCTNAGC	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	234
Bse1I	ACTGG	3 cut(s)	179, 190, 401
BseDI	CCNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	3 cut(s)	179, 190, 401
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	291, 327
BsiHKCI	CYCGRG	1 cut(s)	366
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	2 cut(s)	291, 327
Bsp143I	GATC	1 cut(s)	362
BspACI	CCGC	2 cut(s)	58, 407
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	2 cut(s)	357, 370
BsrI	ACTGG	3 cut(s)	179, 190, 401
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	413
BstKTI	GATC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	327
BstSNI	TACGTA	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	152, 409
Csp6I	GTAC	2 cut(s)	239, 243
CviAII	CATG	1 cut(s)	50
CviQI	GTAC	2 cut(s)	239, 243
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
Eco105I	TACGTA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	53
FaiI	YATR	5 cut(s)	51, 101, 126, 157, 304
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	3 cut(s)	72, 87, 339
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	2 cut(s)	189, 254
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188III	TCNNGA	3 cut(s)	146, 353, 366
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	200, 325
HpyF3I	CTNAG	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	38, 160, 171, 211, 267, 338, 414
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	69, 187
MaeI	CTAG	3 cut(s)	72, 87, 339
MaeII	ACGT	1 cut(s)	241
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	291, 327
MluCI	AATT	2 cut(s)	141, 267
MlyI	GAGTC	2 cut(s)	183, 248
MnlI	CCTC	5 cut(s)	65, 113, 241, 244, 402
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	267
NdeII	GATC	1 cut(s)	362
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	2 cut(s)	183, 248
PpsI	GAGTC	2 cut(s)	183, 248
Ppu21I	YACGTR	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	152, 409
PsrI	GAACNNNNNNTAC	2 cut(s)	164, 196
PsuI	RGATCY	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	240, 244
RsaNI	GTAC	2 cut(s)	239, 243
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	2 cut(s)	152, 409
SchI	GAGTC	2 cut(s)	183, 248
SduI	GDGCHC	2 cut(s)	291, 327
SfaNI	GCATC	2 cut(s)	69, 187
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	330
SnaBI	TACGTA	1 cut(s)	242
Sse9I	AATT	2 cut(s)	141, 267
SsiI	CCGC	2 cut(s)	58, 407
SspMI	CTAG	3 cut(s)	72, 87, 339
StyI	CCWWGG	1 cut(s)	234
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	132, 312
TasI	AATT	2 cut(s)	141, 267
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	141
XspI	CTAG	3 cut(s)	72, 87, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.