Rorug02G0411100

Belongs to the TPP enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
52715582 .. 52717860
2279 bp
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UTR
Exon/CDS
Intron
Rorug02G0411100.1

Sequence Viewer

Length: 270 bp
ATGAACTTGGGATTTTACCTTGTTGCATATGATGACATTGGGGGCATTTCCTGCCAAAAGGCTTGCAACTCATCTAGTCACATTTGTAGTTTCACTCGGGTCATCAGTAAGCACCCAATCTTTTGGACTACAGGCCCTACTTTTTCCGAGTCTCCGTTTGTCCCAAAGGAAGAAAGTTTATATAATAGTCGCATACATATTCGACAAAATGCCGTAGCAGATCGCATTCACCAGCTCACAAGAATTGAAGTGGTCTCTTGCATTCTTTGA

Protein Analysis

89

Amino Acids

10.05

Weight (kDa)

7.72

Isoelectric Point (pI)

72.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 156, 259
Ama87I CYCGRG 1 cut(s) 96
AoxI GGCC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 96
BceAI ACGGC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 156, 259
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 259
BshFI GGCC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 156, 259
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 2 cut(s) 225, 261
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 96
Bsp143I GATC 1 cut(s) 220
BspANI GGCC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 259
BssMI GATC 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 64
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 2 cut(s) 156, 259
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 134
CviJI RGCY 3 cut(s) 62, 135, 235
CviKI_1 RGCY 3 cut(s) 62, 135, 235
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 134
FaiI YATR 6 cut(s) 28, 30, 181, 183, 194, 198
FaqI GGGAC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 28
FspBI CTAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 135
HinfI GANTC 1 cut(s) 149
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 26, 66, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 64, 117, 245
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 182
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 158
Mva1269I GAATGC 2 cut(s) 225, 261
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeI CATATG 1 cut(s) 28
NdeII GATC 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 77
PctI GAATGC 2 cut(s) 225, 261
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 158
SetI ASST 2 cut(s) 21, 237
SfcI CTRYAG 1 cut(s) 129
Sse9I AATT 1 cut(s) 243
SspMI CTAG 1 cut(s) 75
TaqI TCGA 1 cut(s) 202
TasI AATT 1 cut(s) 243
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 144
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.