Rroxscaffold_1G00066000

Belongs to the TPP enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001627
Physical Location & Seq
Reverse (-)
87517180 .. 87518952
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066000.1

Sequence Viewer

Length: 315 bp
ATGCCATTGAATGTTGCAGCTACATCAGTGAAGTCAGCAATTCCTCCTCCAATTACAAGGTCTCTCTTACGGTCATCGGGATCGAAGTTGCACACTTGTAGAAATAATGAGATTACTTATACAGAACAAAAAGTACGTACAGAGGAGGACTCAACTAAAGCAATTGCCAAAGCAACAGGGGAGCACAAGGATAGTTTATGCTTCATCGAAGTTTTTGTGCACAAAGATGACACTAGCAAAGAGCTTCTGGAATGGGGATCCCGAGTTTCAGCTGCCAACAGCCGACCTCCAAATCCAGTAGCGGACCTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130
Pfam Domains
Protein Families
TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

7.81

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 302
AclWI GGATC 3 cut(s) 88, 252, 265
AfaI GTAC 2 cut(s) 135, 139
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 4 cut(s) 20, 244, 272, 312
AluI AGCT 4 cut(s) 20, 244, 272, 312
Alw21I GWGCWC 2 cut(s) 186, 222
Alw26I GTCTC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 218
AlwI GGATC 3 cut(s) 88, 252, 265
Ama87I CYCGRG 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 218
ApeKI GCWGC 2 cut(s) 17, 272
AspS9I GGNCC 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 222
BamHI GGATCC 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 186, 222
BbvI GCAGC 2 cut(s) 29, 259
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 234
BisI GCNGC 2 cut(s) 18, 273
BlsI GCNGC 2 cut(s) 19, 274
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 259
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 2 cut(s) 36, 158
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 29, 259
BsiHKAI GWGCWC 2 cut(s) 186, 222
BsiHKCI CYCGRG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 186, 222
Bsp143I GATC 2 cut(s) 80, 257
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 3 cut(s) 88, 252, 265
BspTNI GGTCTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 296
BssMI GATC 2 cut(s) 80, 257
Bst4CI ACNGT 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 308
BstKTI GATC 2 cut(s) 83, 260
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 80, 257
BstSLI GKGCMC 1 cut(s) 222
BstSNI TACGTA 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 29, 259
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 2 cut(s) 134, 138
CviJI RGCY 5 cut(s) 20, 244, 272, 282, 312
CviKI_1 RGCY 5 cut(s) 20, 244, 272, 282, 312
CviQI GTAC 2 cut(s) 134, 138
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 82, 259
DpnII GATC 2 cut(s) 80, 257
Eco105I TACGTA 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 261
FaiI YATR 2 cut(s) 120, 199
Fnu4HI GCNGC 2 cut(s) 18, 273
Fsp4HI GCNGC 2 cut(s) 18, 273
FspBI CTAG 1 cut(s) 234
GluI GCNGC 2 cut(s) 18, 273
HinfI GANTC 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 3 cut(s) 78, 248, 261
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 17, 91, 220
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 136
Kzo9I GATC 2 cut(s) 80, 257
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 3 cut(s) 162, 233, 309
Lsp1109I GCAGC 2 cut(s) 29, 259
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 136
MalI GATC 2 cut(s) 82, 259
MboI GATC 2 cut(s) 80, 257
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 186, 222
MluCI AATT 3 cut(s) 39, 51, 162
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 5 cut(s) 54, 57, 136, 139, 297
MslI CAYNNNNRTG 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 272
MunI CAATTG 1 cut(s) 162
NdeII GATC 2 cut(s) 80, 257
NlaIV GGNNCC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 19, 274
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Ppu21I YACGTR 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 304
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PsuI RGATCY 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 135, 139
RsaNI GTAC 2 cut(s) 134, 138
RseI CAYNNNNRTG 1 cut(s) 225
SatI GCNGC 2 cut(s) 18, 273
Sau3AI GATC 2 cut(s) 80, 257
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 2 cut(s) 186, 222
SetI ASST 8 cut(s) 22, 62, 139, 246, 274, 289, 309, 314
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 225
SnaBI TACGTA 1 cut(s) 137
Sse9I AATT 3 cut(s) 39, 51, 162
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 83, 207
TasI AATT 3 cut(s) 39, 51, 162
TscAI CASTG 1 cut(s) 33
TseI GCWGC 2 cut(s) 17, 272
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 304
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.