MD07G1137600.v1.1

Pyruvate decarboxylase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
20038283 .. 20038710
428 bp
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UTR
Exon/CDS
Intron
MD07G1137600.v1.1.491

Sequence Viewer

Length: 210 bp
ATGATACACGAAATCGATGTTTCAGAAGCTTCACATGAGGTTCGTACCGAGGAGGGGCTAATGGAAGCGATTGCAACAGCAACGGGGGAGAAGAAAGACTGCTTGTGCTTTGTTGAAGTCACTATTCACAAGGATGACACAAGCAAAGAGCTGCTTGAATGGGGATCCAGGGTCTCTTCTGCCAATAGCCGCCTGCCAAATCCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.67

Weight (kDa)

4.73

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 190
AclWI GGATC 2 cut(s) 159, 172
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 2 cut(s) 116, 158
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 2 cut(s) 29, 151
AluI AGCT 2 cut(s) 29, 151
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 159, 172
ApeKI GCWGC 1 cut(s) 151
BamHI GGATCC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 2 cut(s) 152, 190
BlsI GCNGC 2 cut(s) 153, 191
Bme1390I CCNGG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 48, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 48, 168
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 1 cut(s) 190
BspDI ATCGAT 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 2 cut(s) 159, 172
BspTNI GGTCTC 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 48, 168
BssMI GATC 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 1 cut(s) 167
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 15
BsuTUI ATCGAT 1 cut(s) 15
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 15
Csp6I GTAC 1 cut(s) 45
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 29, 58, 151, 189
CviKI_1 RGCY 4 cut(s) 29, 58, 151, 189
CviQI GTAC 1 cut(s) 45
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 38
FaiI YATR 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 152, 190
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 152, 190
GluI GCNGC 2 cut(s) 152, 190
Hin1II CATG 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 74
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 3 cut(s) 154, 181, 206
Lsp1109I GCAGC 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 2 cut(s) 103, 168
MflI RGATCY 1 cut(s) 164
MnlI CCTC 3 cut(s) 31, 43, 46
MslI CAYNNNNRTG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
NdeII GATC 1 cut(s) 164
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 153, 191
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 2 cut(s) 152, 190
Sau3AI GATC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 169
SetI ASST 3 cut(s) 31, 42, 153
SmiMI CAYNNNNRTG 1 cut(s) 132
SsiI CCGC 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 167
TaqI TCGA 1 cut(s) 15
TauI GCSGC 1 cut(s) 192
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.