Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000109.1

Orthogroup ID

OG0001627

Physical Location & Seq

Genomic Coordinates Forward (+)

31404 .. 31732

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000109.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

atgcaatccacaacggtgaaggcaaatgttgcactaccaaagattcaggtacgtactgaggacttaactgaagcaattgcaaaagcaacgggggagcagaagtatagtttatgcttcatcgaagtttttgtgctgaaagatgacactagcaaagagcttctggaatggggatcccgagtttcagctgctaacagccgacctccaaatcctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

71

Amino Acids

7.85

Weight (kDa)

6.18

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54960
fragaria_vesca	FvH4_3g08040 FvH4_3g08040 FvH4_3g39060 FvH4_3g39060
malus_domestica	MD03G1065100.v1.1 MD07G1137600.v1.1 MD10G1283500.v1.1 MD11G1069100.v1.1
prunus_persica	Prupe.4G058300_v2.0.a1 Prupe.6G054000_v2.0.a1 Prupe.6G054000_v2.0.a1
pyrus_communis	pycom03g05210 pycom10g23650 pycom11g05750 pycom11g05760
rosa_chinensis	RchiOBHm_Chr5g0010191 RchiOBHm_Chr5g0010251 RchiOBHm_Chr5g0070371
rosa_laevigata	RLG00000031729 RLG00000031787 RLG00000036128
rosa_multiflora	Rmu_sc0000109.1_g000009 Rmu_sc0000818.1_g000009 Rmu_sc0001825.1_g000004 Rmu_sc0006163.1_g000002 Rmu_sc0007961.1_g000016 Rmu_sc0021253.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066000
rosa_rugosa	Rorug02G0411100 Rorug04G0449500 Rorug04G0453100 Rorug05G0405300 Rorug05G0405300 Rorug05G0405400
rosa_samantha	Rh3DG356500 Rh5AG080500 Rh5AG460900 Rh5BG075100 Rh5BG080000 Rh5BG479200 Rh5CG088800 Rh5CG503400 Rh5DG076000 Rh5DG080100 Rh5DG080200 Rh5DG491100
rosa_wichuraiana	Rw5G007460 Rw5G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	165, 178
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	51, 55
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	2 cut(s)	157, 185
AluI	AGCT	2 cut(s)	157, 185
AlwI	GGATC	2 cut(s)	165, 178
Ama87I	CYCGRG	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
BseMII	CTCAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	165, 178
BssMI	GATC	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	57, 210
BstKTI	GATC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSNI	TACGTA	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	50, 54
CviJI	RGCY	3 cut(s)	157, 185, 195
CviKI_1	RGCY	3 cut(s)	157, 185, 195
CviQI	GTAC	2 cut(s)	50, 54
DdeI	CTNAG	2 cut(s)	57, 210
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
Eco105I	TACGTA	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	174
FaiI	YATR	2 cut(s)	105, 112
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	161, 174
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	4, 32, 80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	57, 210
HpySE526I	ACGT	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	2 cut(s)	32, 146
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	52
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	1 cut(s)	75
MnlI	CCTC	2 cut(s)	52, 210
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	172
OliI	CACNNNNGTG	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	51, 55
RsaNI	GTAC	2 cut(s)	50, 54
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	170
SetI	ASST	5 cut(s)	51, 55, 159, 187, 202
SgeI	CNNG	6 cut(s)	59, 102, 159, 173, 186, 188
SmiMI	CAYNNNNRTG	1 cut(s)	14
SnaBI	TACGTA	1 cut(s)	53
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	106
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.