Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001627

Physical Location & Seq

Genomic Coordinates Reverse (-)

22310553 .. 22312832

Gene Structure 2280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

ATGGACACTAAGATCGGATCTATCGACGCGTGTAACCCGACCAACCACGATATCGGCGGTCCTCCAAACGGCGGAGTCTCCACCGTTCAAAACACAAGTCCACTTCACTCCACCACCGTCAGCCCCTGCGACGCGACTCTTGGCCGTTACCTAGCAAGACGGTTAGTCGAAATCGGCGTCACCGATGTCTTCTCCGTTCCTGGTGATTTCAACCTGACGCTTCTCGATCACCTAATCGCCGAACCAAACCTCAAGCTGATCGGTTGCTGCAACGAGCTTAACGCCGGATACGCTGCTGACGGTTACGCTAGATCTCGCGGTGTTGGTGCGTGCGTCGTTACGTTCACCGTCGGTGGATTGAGTGTTCTGAATGCGATCGCCGGTGCTTACAGTGAGAATCTGCCTCTGATTTGCATCGTCGGTGGTCCAAACTCCAACGATTACGGTACCAATAGGATTCTTCATCATACAATTGGTTTACCTGATTTCACTCAAGAGCTTAGGTGTTTTCAAGCTGTTACTTGTTTTCAAGCTGTGATTAATAACTTAGAAGAGGCTCATGAACTTATCGATACTGCGATTTCAACTGCTTTGAAAGAAAGCAAACCTGTTTATATCAGTATCAGCTGTAATTTACCGGCGATTCCTCTTCCGACGTTTAGTCGTCATCCTGTTCCGTTCATGCTTCCGATGAAGGTTAGCAATCAGATTGGTTTAGATGCGGCGGTGGAGGCAGCTGCTGAGTTCTTGAACAAAGCTGTGAAGCCAGTTCTTGTTGGTGGGCCGAAAATGCGGGTTGCGAAAGCCGCGGATGCTTTTGTTGAGCTTGCTGATGCTTCTGGCTATGGTCTTGCTGTGATGCCTTCTGCTAAAGGACAAGTACCTGAGCATCACAAGCATTTTATAGGGACGTATTGGGGAGCTGTGAGTACAGCTTTTTGTGCTGAAATCGTTGAATCTGCGGATGCTTATCTGTTTGCAGGTCCGATTTTCAACGATTACAGTTCTGTTGGGTATTCTCTGCTTCTCAAGAAGGAGAAGGCAATCATCGTTCAGCCTGATCGGGTTACTATCGGTAACGGACCTGCGTTTGGATGTGTTCTTATGAAGGATTTTCTAAGCGAGTTGGCTAAACGAATTAAGCACAACAACACTTCTTATGAGAATTATCACAGGATCTATGTCCCAGAAGGAAAGCCTTTGAGAGATAACCCGAATGAGTCTTTGAGGGTTAATGTACTGTTCCAACACATTCAGAATATGCTCTCTTCTGAGTCTGCTGTGCTTGCTGAGACAGGAGATTCCTGGTTCAACTGTCAGAAGCTGAAGCTCCCTGAAGGATGCGGTTACGAATTCCAAATGCAGTACGGATCAATTGGCTGGTCAGTGGGTGCTACTCTAGGCTATGCTCAAGCCATGCCAAACAGGCGTGTCATTGCTTGTATTGGAGATGGTAGTTTCCAGGTAACCGCACAGGATGTATCTACGATGATACGGTGTGGGCAAAAGACCATAATCTTCCTCATCAACAACGGAGGCTACACCATTGAGGTGGAAATTCACGATGGTCCTTACAATGTCATAAAGAACTGGAACTACACAGCTTTTGTTGAGGCCATACACAATGGAGAAGGAAAATGCTGGACTGCCAAGGTGAGATGCGAGGAGGAGTTAGTGAAAGCAATCAACACGGCAACCAATGAGGAAAAAGAGAGCTTTTGTTTCATTGAAGTGATAGTGCACAAAGACGATACAAGCAAGGAACTTTTGGAGTGGGGCTCTAGAGTCTCTGCTGCTAATAGTCGTCCCCCAAATCCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0034059 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

607

Amino Acids

65.82

Weight (kDa)

5.63

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	46 - 151	4.4e-30	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	243 - 361	3.6e-21	Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C	PF02775	454 - 578	1.6e-15	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54960
fragaria_vesca	FvH4_3g08040 FvH4_3g08040 FvH4_3g39060 FvH4_3g39060
malus_domestica	MD03G1065100.v1.1 MD07G1137600.v1.1 MD10G1283500.v1.1 MD11G1069100.v1.1
prunus_persica	Prupe.4G058300_v2.0.a1 Prupe.6G054000_v2.0.a1 Prupe.6G054000_v2.0.a1
pyrus_communis	pycom03g05210 pycom10g23650 pycom11g05750 pycom11g05760
rosa_chinensis	RchiOBHm_Chr5g0010191 RchiOBHm_Chr5g0010251 RchiOBHm_Chr5g0070371
rosa_laevigata	RLG00000031729 RLG00000031787 RLG00000036128
rosa_multiflora	Rmu_sc0000109.1_g000009 Rmu_sc0000818.1_g000009 Rmu_sc0001825.1_g000004 Rmu_sc0006163.1_g000002 Rmu_sc0007961.1_g000016 Rmu_sc0021253.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066000
rosa_rugosa	Rorug02G0411100 Rorug04G0449500 Rorug04G0453100 Rorug05G0405300 Rorug05G0405300 Rorug05G0405400
rosa_samantha	Rh3DG356500 Rh5AG080500 Rh5AG460900 Rh5BG075100 Rh5BG080000 Rh5BG479200 Rh5CG088800 Rh5CG503400 Rh5DG076000 Rh5DG080100 Rh5DG080200 Rh5DG491100
rosa_wichuraiana	Rw5G007460 Rw5G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	971, 1093
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	4 cut(s)	29, 134, 318, 809
AclWI	GGATC	3 cut(s)	25, 1184, 1378
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	1352, 1557
AcuI	CTGAAG	2 cut(s)	1346, 1356
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	5 cut(s)	448, 882, 931, 1239, 1367
AfiI	CCNNNNNNNGG	3 cut(s)	68, 71, 1091
AflIII	ACRYGT	1 cut(s)	27
AhdI	GACNNNNNGTC	2 cut(s)	164, 660
AjnI	CCWGG	3 cut(s)	199, 1304, 1461
AloI	GAACNNNNNNTCC	2 cut(s)	348, 380
Alw21I	GWGCWC	1 cut(s)	1743
Alw26I	GTCTC	3 cut(s)	82, 1286, 1792
Alw44I	GTGCAC	1 cut(s)	1739
AlwI	GGATC	3 cut(s)	25, 1184, 1378
AlwNI	CAGNNNCTG	3 cut(s)	126, 740, 1324
AoxI	GGCC	3 cut(s)	142, 782, 1614
ApaLI	GTGCAC	1 cut(s)	1739
ApeKI	GCWGC	5 cut(s)	267, 293, 734, 737, 1793
ApoI	RAATTY	2 cut(s)	1352, 1557
ArsI	GACNNNNNNTTYG	4 cut(s)	82, 114, 162, 194
AseI	ATTAAT	1 cut(s)	540
AsiSI	GCGATCGC	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	446
AspS9I	GGNCC	6 cut(s)	59, 425, 782, 983, 1082, 1568
AsuHPI	GGTGA	5 cut(s)	172, 215, 221, 337, 1666
AvaII	GGWCC	5 cut(s)	59, 425, 983, 1082, 1568
BaeGI	GKGCMC	1 cut(s)	1743
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	1781
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	1743
BbvI	GCAGC	5 cut(s)	254, 280, 724, 746, 1780
BccI	CCATC	2 cut(s)	1445, 1559
BceAI	ACGGC	3 cut(s)	85, 129, 1707
BciT130I	CCWGG	3 cut(s)	201, 1306, 1463
BciVI	GTATCC	1 cut(s)	281
BcoDI	GTCTC	3 cut(s)	82, 1286, 1792
BfaI	CTAG	4 cut(s)	152, 309, 1400, 1782
BfuAI	ACCTGC	2 cut(s)	971, 1093
BfuI	GTATCC	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	1426
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	7 cut(s)	268, 294, 723, 735, 738, 807, 1794
BlsI	GCNGC	7 cut(s)	269, 295, 724, 736, 739, 808, 1795
Bme1390I	CCNGG	3 cut(s)	201, 1306, 1463
Bme18I	GGWCC	5 cut(s)	59, 425, 983, 1082, 1568
BmeRI	GACNNNNNGTC	2 cut(s)	164, 660
BmgT120I	GGNCC	6 cut(s)	59, 425, 782, 983, 1082, 1568
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	3 cut(s)	201, 1306, 1463
BmsI	GCATC	9 cut(s)	423, 709, 802, 823, 849, 898, 955, 1331, 1649
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	1763, 1795
Bpu10I	CCTNAGC	2 cut(s)	500, 885
BpuEI	CTTGAG	4 cut(s)	236, 477, 1013, 1395
Bsa29I	ATCGAT	1 cut(s)	570
BsaBI	GATNNNNATC	2 cut(s)	413, 969
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	807, 1650
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 71, 1091
Bse118I	RCCGGY	2 cut(s)	380, 637
Bse1I	ACTGG	2 cut(s)	767, 1595
Bse3DI	GCAATG	1 cut(s)	1434
Bse8I	GATNNNNATC	2 cut(s)	413, 969
BseBI	CCWGG	3 cut(s)	201, 1306, 1463
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	807, 1650
BseGI	GGATG	6 cut(s)	667, 817, 970, 1100, 1346, 1483
BseJI	GATNNNNATC	2 cut(s)	413, 969
BseLI	CCNNNNNNNGG	3 cut(s)	68, 71, 1091
BseMI	GCAATG	1 cut(s)	1434
BseMII	CTCAG	4 cut(s)	732, 876, 1263, 1281
BseNI	ACTGG	2 cut(s)	767, 1595
BseRI	GAGGAG	2 cut(s)	1679, 1682
BseSI	GKGCMC	1 cut(s)	1743
BseXI	GCAGC	5 cut(s)	254, 280, 724, 746, 1780
Bsh1236I	CGCG	4 cut(s)	29, 134, 318, 809
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	144, 784, 1616
BshNI	GGYRCC	1 cut(s)	446
BshVI	ATCGAT	1 cut(s)	570
BsiEI	CGRYCG	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	1743
BsiSI	CCGG	3 cut(s)	285, 381, 638
BslFI	GGGAC	3 cut(s)	922, 1169, 1791
BslI	CCNNNNNNNGG	3 cut(s)	68, 71, 1091
BsmAI	GTCTC	3 cut(s)	82, 1286, 1792
BsmFI	GGGAC	3 cut(s)	922, 1169, 1791
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	144, 784, 1616
Bsp1286I	GDGCHC	2 cut(s)	1743, 1781
Bsp143I	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
BspANI	GGCC	3 cut(s)	144, 784, 1616
BspCNI	CTCAG	4 cut(s)	733, 877, 1264, 1282
BspDI	ATCGAT	1 cut(s)	570
BspFNI	CGCG	4 cut(s)	29, 134, 318, 809
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	448
BspMI	ACCTGC	2 cut(s)	971, 1093
BspPI	GGATC	3 cut(s)	25, 1184, 1378
BspT107I	GGYRCC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	1434
BsrFI	RCCGGY	2 cut(s)	380, 637
BsrI	ACTGG	2 cut(s)	767, 1595
BssAI	RCCGGY	2 cut(s)	380, 637
BssECI	CCNNGG	2 cut(s)	807, 1650
BssMI	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	1650
Bst2UI	CCWGG	3 cut(s)	201, 1306, 1463
Bst6I	CTCTTC	3 cut(s)	546, 654, 1273
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	331, 828, 1287
BstDEI	CTNAG	8 cut(s)	9, 500, 547, 741, 885, 1118, 1272, 1290
BstDSI	CCRYGG	1 cut(s)	807
BstEII	GGTNACC	1 cut(s)	1465
BstF5I	GGATG	6 cut(s)	667, 817, 970, 1100, 1346, 1483
BstFNI	CGCG	4 cut(s)	29, 134, 318, 809
BstKTI	GATC	9 cut(s)	15, 20, 229, 261, 314, 378, 1063, 1179, 1373
BstMAI	GTCTC	3 cut(s)	82, 1286, 1792
BstMBI	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	9 cut(s)	290, 731, 790, 806, 812, 895, 941, 1286, 1426
BstNI	CCWGG	3 cut(s)	201, 1306, 1463
BstPI	GGTNACC	1 cut(s)	1465
BstSCI	CCNGG	3 cut(s)	199, 1304, 1461
BstSLI	GKGCMC	1 cut(s)	1743
BstUI	CGCG	4 cut(s)	29, 134, 318, 809
BstV1I	GCAGC	5 cut(s)	254, 280, 724, 746, 1780
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	3 cut(s)	17, 311, 1176
BstXI	CCANNNNNNTGG	1 cut(s)	1552
BstYI	RGATCY	3 cut(s)	17, 311, 1176
Bsu15I	ATCGAT	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	144, 784, 1616
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	6 cut(s)	667, 817, 970, 1100, 1346, 1483
BtsIMutI	CAGTG	2 cut(s)	397, 1392
BveI	ACCTGC	2 cut(s)	971, 1093
Cac8I	GCNNGC	3 cut(s)	331, 828, 1287
CaiI	CAGNNNCTG	3 cut(s)	126, 740, 1324
CciI	TCATGA	1 cut(s)	559
Cfr10I	RCCGGY	2 cut(s)	380, 637
Cfr13I	GGNCC	6 cut(s)	59, 425, 782, 983, 1082, 1568
Cfr42I	CCGCGG	1 cut(s)	810
ClaI	ATCGAT	1 cut(s)	570
CseI	GACGC	5 cut(s)	35, 140, 166, 226, 322
Csp6I	GTAC	5 cut(s)	447, 881, 930, 1238, 1366
CviAII	CATG	3 cut(s)	560, 682, 1417
CviQI	GTAC	5 cut(s)	447, 881, 930, 1238, 1366
DdeI	CTNAG	8 cut(s)	9, 500, 547, 741, 885, 1118, 1272, 1290
DpnI	GATC	9 cut(s)	14, 19, 228, 260, 313, 377, 1062, 1178, 1372
DpnII	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
DriI	GACNNNNNGTC	2 cut(s)	164, 660
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	546, 654, 1273
Eam1105I	GACNNNNNGTC	2 cut(s)	164, 660
EarI	CTCTTC	3 cut(s)	546, 654, 1273
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	1650
Eco24I	GRGCYC	1 cut(s)	1781
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	5 cut(s)	59, 425, 983, 1082, 1568
Eco57I	CTGAAG	2 cut(s)	1346, 1356
Eco91I	GGTNACC	1 cut(s)	1465
EcoO65I	GGTNACC	1 cut(s)	1465
EcoRI	GAATTC	1 cut(s)	1352
EcoRII	CCWGG	3 cut(s)	199, 1304, 1461
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	1650
EcoT38I	GRGCYC	1 cut(s)	1781
ErhI	CCWWGG	1 cut(s)	1650
FaeI	CATG	3 cut(s)	563, 685, 1420
FaqI	GGGAC	3 cut(s)	922, 1169, 1791
FatI	CATG	3 cut(s)	559, 681, 1416
FauI	CCCGC	1 cut(s)	786
Fnu4HI	GCNGC	7 cut(s)	268, 294, 723, 735, 738, 807, 1794
FokI	GGATG	6 cut(s)	654, 824, 977, 1107, 1353, 1490
FriOI	GRGCYC	1 cut(s)	1781
Fsp4HI	GCNGC	7 cut(s)	268, 294, 723, 735, 738, 807, 1794
FspBI	CTAG	4 cut(s)	152, 309, 1400, 1782
GluI	GCNGC	7 cut(s)	268, 294, 723, 735, 738, 807, 1794
HaeIII	GGCC	3 cut(s)	144, 784, 1616
HapII	CCGG	3 cut(s)	285, 381, 638
HgaI	GACGC	5 cut(s)	35, 140, 166, 226, 322
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	563, 685, 1420
HpaII	CCGG	3 cut(s)	285, 381, 638
HphI	GGTGA	5 cut(s)	172, 215, 221, 337, 1666
Hpy166II	GTNNAC	4 cut(s)	101, 345, 479, 1741
Hpy188III	TCNNGA	7 cut(s)	224, 494, 560, 748, 1030, 1562, 1782
Hpy8I	GTNNAC	4 cut(s)	101, 345, 479, 1741
Hpy99I	CGWCG	6 cut(s)	29, 134, 338, 353, 422, 658
HpyAV	CCTTC	8 cut(s)	688, 873, 1027, 1033, 1102, 1184, 1331, 1625
HpyCH4IV	ACGT	3 cut(s)	341, 656, 911
HpyCH4V	TGCA	5 cut(s)	270, 414, 980, 1363, 1741
HpyF10VI	GCNNNNNNNGC	9 cut(s)	290, 731, 790, 806, 812, 895, 941, 1286, 1426
HpyF3I	CTNAG	8 cut(s)	9, 500, 547, 741, 885, 1118, 1272, 1290
HpySE526I	ACGT	3 cut(s)	341, 656, 911
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	563, 685, 1420
KpnI	GGTACC	1 cut(s)	450
KspI	CCGCGG	1 cut(s)	810
Kzo9I	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
LmnI	GCTCC	2 cut(s)	920, 1335
Lsp1109I	GCAGC	5 cut(s)	254, 280, 724, 746, 1780
LweI	GCATC	9 cut(s)	423, 709, 802, 823, 849, 898, 955, 1331, 1649
MaeI	CTAG	4 cut(s)	152, 309, 1400, 1782
MaeII	ACGT	3 cut(s)	341, 656, 911
MalI	GATC	9 cut(s)	14, 19, 228, 260, 313, 377, 1062, 1178, 1372
MboI	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
MboII	GAAGA	6 cut(s)	181, 452, 563, 641, 1260, 1510
MfeI	CAATTG	2 cut(s)	471, 1374
MflI	RGATCY	3 cut(s)	17, 311, 1176
MhlI	GDGCHC	2 cut(s)	1743, 1781
MluCI	AATT	7 cut(s)	471, 631, 1137, 1165, 1352, 1374, 1557
MluI	ACGCGT	1 cut(s)	27
MlyI	GAGTC	5 cut(s)	84, 130, 1229, 1283, 1794
MmeI	TCCRAC	3 cut(s)	459, 677, 1270
MseI	TTAA	4 cut(s)	279, 540, 1140, 1233
MslI	CAYNNNNRTG	2 cut(s)	1550, 1730
MspA1I	CMGCKG	3 cut(s)	627, 737, 809
MspI	CCGG	3 cut(s)	285, 381, 638
MspR9I	CCNGG	3 cut(s)	201, 1306, 1463
MunI	CAATTG	2 cut(s)	471, 1374
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	3 cut(s)	201, 1306, 1463
MvnI	CGCG	4 cut(s)	29, 134, 318, 809
MwoI	GCNNNNNNNGC	9 cut(s)	290, 731, 790, 806, 812, 895, 941, 1286, 1426
NdeII	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
NlaIII	CATG	3 cut(s)	563, 685, 1420
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	178
PagI	TCATGA	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	3 cut(s)	21, 174, 180
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	5 cut(s)	397, 457, 643, 956, 1301
PkrI	GCNGC	7 cut(s)	269, 295, 724, 736, 739, 808, 1795
Ple19I	CGATCG	1 cut(s)	378
PleI	GAGTC	5 cut(s)	83, 130, 1228, 1282, 1793
PpsI	GAGTC	5 cut(s)	83, 130, 1228, 1282, 1793
PshBI	ATTAAT	1 cut(s)	540
Psp6I	CCWGG	3 cut(s)	199, 1304, 1461
PspEI	GGTNACC	1 cut(s)	1465
PspGI	CCWGG	3 cut(s)	199, 1304, 1461
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	6 cut(s)	59, 425, 782, 983, 1082, 1568
PsrI	GAACNNNNNNTAC	2 cut(s)	1580, 1612
PstNI	CAGNNNCTG	3 cut(s)	126, 740, 1324
PsuI	RGATCY	3 cut(s)	17, 311, 1176
PvuI	CGATCG	1 cut(s)	378
PvuII	CAGCTG	2 cut(s)	627, 737
RgaI	GCGATCGC	1 cut(s)	378
RsaI	GTAC	5 cut(s)	448, 882, 931, 1239, 1367
RsaNI	GTAC	5 cut(s)	447, 881, 930, 1238, 1366
RseI	CAYNNNNRTG	2 cut(s)	1550, 1730
SacII	CCGCGG	1 cut(s)	810
SaqAI	TTAA	4 cut(s)	279, 540, 1140, 1233
SatI	GCNGC	7 cut(s)	268, 294, 723, 735, 738, 807, 1794
Sau3AI	GATC	9 cut(s)	12, 17, 226, 258, 311, 375, 1060, 1176, 1370
Sau96I	GGNCC	6 cut(s)	59, 425, 782, 983, 1082, 1568
SchI	GAGTC	5 cut(s)	84, 130, 1229, 1283, 1794
ScrFI	CCNGG	3 cut(s)	201, 1306, 1463
SduI	GDGCHC	2 cut(s)	1743, 1781
SfaAI	GCGATCGC	1 cut(s)	378
SfaNI	GCATC	9 cut(s)	423, 709, 802, 823, 849, 898, 955, 1331, 1649
Sfr303I	CCGCGG	1 cut(s)	810
SgfI	GCGATCGC	1 cut(s)	378
SgrAI	CRCCGGYG	1 cut(s)	380
SgrBI	CCGCGG	1 cut(s)	810
SinI	GGWCC	5 cut(s)	59, 425, 983, 1082, 1568
SmiMI	CAYNNNNRTG	2 cut(s)	1550, 1730
SmlI	CTYRAG	4 cut(s)	251, 492, 1028, 1410
SmoI	CTYRAG	4 cut(s)	251, 492, 1028, 1410
Sse9I	AATT	7 cut(s)	471, 631, 1137, 1165, 1352, 1374, 1557
SspMI	CTAG	4 cut(s)	152, 309, 1400, 1782
StyD4I	CCNGG	3 cut(s)	199, 1304, 1461
StyI	CCWWGG	1 cut(s)	1650
TaiI	ACGT	3 cut(s)	344, 659, 914
TaqI	TCGA	4 cut(s)	24, 168, 225, 570
TasI	AATT	7 cut(s)	471, 631, 1137, 1165, 1352, 1374, 1557
TatI	WGTACW	2 cut(s)	929, 1237
TauI	GCSGC	2 cut(s)	725, 809
TfiI	GAWTC	5 cut(s)	397, 457, 643, 956, 1301
Tru1I	TTAA	4 cut(s)	279, 540, 1140, 1233
Tru9I	TTAA	4 cut(s)	279, 540, 1140, 1233
TscAI	CASTG	2 cut(s)	397, 1392
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	5 cut(s)	267, 293, 734, 737, 1793
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	6 cut(s)	452, 576, 670, 707, 1121, 1714
TspGWI	ACGGA	5 cut(s)	184, 666, 1095, 1383, 1548
TspRI	CASTG	2 cut(s)	397, 1392
VneI	GTGCAC	1 cut(s)	1739
VpaK11BI	GGWCC	5 cut(s)	59, 425, 983, 1082, 1568
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	2 cut(s)	1352, 1557
XbaI	TCTAGA	1 cut(s)	1781
XspI	CTAG	4 cut(s)	152, 309, 1400, 1782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.