Prupe.4G060400_v2.0.a1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017540
Physical Location & Seq
Reverse (-)
2876281 .. 2881568
5288 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G060400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 297 bp
ATGGCTGCAGATTCAAATCTACTCATGAGAGTTTCAGTGCTGATGATCATGCTTATTTGGTCAATGCATGGCAGTGGTTTGGAAGCAACAGATTCTTATGGTGGGCGCAAGACCACGCAGAAGAGTAGAATTGATAGTAATTCTATTTTACGTGGATTGATAAGTTATGATTTGTCTAGGATGGGGAAGAAGCAGCAGCAGTATAACGAGTACATGAGGATGAGCAAGAAATTGGATGGTGACAGAAAATCACCAGGAGGGCCAAACCGTCAGCACAATAATTCCCTCCAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.12

Weight (kDa)

10.06

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31083 AT2G31083 AT2G31085
prunus_persica Prupe.4G060400_v2.0.a1 Prupe.4G170800_v2.0.a1
rosa_roxburghii Rroxscaffold_1G00048800 Rroxscaffold_1G00066050
rosa_samantha Rh5AG080200 Rh5CG088300 Rh5DG075600
rosa_wichuraiana Rw5G007420 Rw5G020020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 1 cut(s) 253
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 5, 193, 196
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 243, 251
BbvI GCAGC 2 cut(s) 205, 208
BccI CCATC 2 cut(s) 175, 230
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 45
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 3 cut(s) 6, 194, 197
BlsI GCNGC 3 cut(s) 7, 195, 198
Bme1390I CCNGG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 255
BseGI GGATG 3 cut(s) 186, 225, 241
BseJI GATNNNNATC 1 cut(s) 15
BseXI GCAGC 2 cut(s) 205, 208
BshFI GGCC 1 cut(s) 262
BsnI GGCC 1 cut(s) 262
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 262
BspHI TCATGA 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 10
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 152
BstF5I GGATG 3 cut(s) 186, 225, 241
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 205, 208
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 3 cut(s) 186, 225, 241
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 42, 79
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 211
CviAII CATG 4 cut(s) 25, 49, 68, 214
CviJI RGCY 2 cut(s) 5, 262
CviKI_1 RGCY 2 cut(s) 5, 262
CviQI GTAC 1 cut(s) 211
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 69
FaeI CATG 4 cut(s) 28, 52, 71, 217
FaiI YATR 7 cut(s) 26, 50, 69, 99, 168, 204, 215
FatI CATG 4 cut(s) 24, 48, 67, 213
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 6, 194, 197
FokI GGATG 3 cut(s) 193, 232, 248
Fsp4HI GCNGC 3 cut(s) 6, 194, 197
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 6, 194, 197
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 262
HhaI GCGC 1 cut(s) 108
Hin1II CATG 4 cut(s) 28, 52, 71, 217
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 2 cut(s) 11, 92
HphI GGTGA 2 cut(s) 243, 251
Hpy188III TCNNGA 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 8, 67
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 4 cut(s) 28, 52, 71, 217
HspAI GCGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 240, 267
Lsp1109I GCAGC 2 cut(s) 205, 208
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 133, 199
MluCI AATT 4 cut(s) 129, 139, 230, 280
MnlI CCTC 3 cut(s) 210, 251, 296
Mph1103I ATGCAT 1 cut(s) 69
MslI CAYNNNNRTG 2 cut(s) 72, 218
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
NdeII GATC 1 cut(s) 45
NlaIII CATG 4 cut(s) 28, 52, 71, 217
NmuCI GTSAC 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 69
PagI TCATGA 1 cut(s) 24
PfeI GAWTC 2 cut(s) 11, 92
PkrI GCNGC 3 cut(s) 7, 195, 198
Ppu21I YACGTR 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 10
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 2 cut(s) 72, 218
SatI GCNGC 3 cut(s) 6, 194, 197
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 255
SetI ASST 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 6
SmiMI CAYNNNNRTG 2 cut(s) 72, 218
Sse9I AATT 4 cut(s) 129, 139, 230, 280
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 154
TasI AATT 4 cut(s) 129, 139, 230, 280
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 2 cut(s) 11, 92
TscAI CASTG 2 cut(s) 42, 79
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 3 cut(s) 5, 193, 196
Tsp45I GTSAC 1 cut(s) 239
TspRI CASTG 2 cut(s) 42, 79
XspI CTAG 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.