Prupe.4G080200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
3891053 .. 3891466
414 bp
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UTR
Exon/CDS
Intron
Prupe.4G080200.1

Sequence Viewer

Length: 414 bp
ATGGGTTTCATGCTCTGCACATTTCTCCTCCTCCTCCTCCTCCACAGCCCCTCCTCTTCTGCTCTCATCTCCTCCTTCTCCTCCTCCTCCTCATCATCATCCCATGAAATCCAACACAGACCCCCCTCAGACGCATCCACCTCCACCGCCGCCCAATACCGAGTGTTCTACATCAAGAACACGACGCCGTTTCCCTTGGACAAACAAGATCAACTGAGCAAGAAGCACAGAAAGATGAGGCACAAGCAGAAGAAGAGGAGAAAGAAAACCAACAAGAACTTCAAAAGCAGGCCTTTCTCCGCAATGCTGCCCAAGGGTTTTGTCCCTCCTTCCGGTTCCTCCCCTTGCCACAATGGTTACCCCAACTCCGTCGTCTTCTTCTGCGACCTTGCCCCCACCACTGCAAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.31

Weight (kDa)

10.38

Isoelectric Point (pI)

72.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18335
fragaria_vesca FvH4_3g05631
prunus_persica Prupe.4G080200_v2.0.a1
rosa_laevigata RLG00000032062
rosa_multiflora Rmu_sc0005803.1_g000010 Rmu_sc0008587.1_g000001
rosa_roxburghii Rroxscaffold_1G00062700
rosa_rugosa Rorug05G0014200 Rorug05G0014300
rosa_samantha Rh5DG104100
rosa_wichuraiana Rw5G009480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 147, 150, 300
AcyI GRCGYC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 294
BceAI ACGGC 1 cut(s) 172
BfaI CTAG 1 cut(s) 412
BisI GCNGC 2 cut(s) 150, 308
BlsI GCNGC 2 cut(s) 151, 309
BmiI GGNNCC 1 cut(s) 337
BmsI GCATC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 195, 312
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 195, 312
BseGI GGATG 2 cut(s) 98, 134
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 141, 206
BseXI GCAGC 1 cut(s) 294
BshFI GGCC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 3 cut(s) 147, 150, 300
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 140, 207
BspLI GGNNCC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 2 cut(s) 195, 312
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 195, 312
Bst6I CTCTTC 2 cut(s) 61, 248
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 127, 215
BstEII GGTNACC 1 cut(s) 356
BstF5I GGATG 2 cut(s) 98, 134
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstPI GGTNACC 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 367
BsuRI GGCC 1 cut(s) 292
BtsCI GGATG 2 cut(s) 98, 134
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 290
CseI GACGC 2 cut(s) 140, 193
CviAII CATG 2 cut(s) 10, 104
CviJI RGCY 2 cut(s) 48, 292
CviKI_1 RGCY 2 cut(s) 48, 292
DdeI CTNAG 2 cut(s) 127, 215
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 61, 248
EarI CTCTTC 2 cut(s) 61, 248
Eco130I CCWWGG 2 cut(s) 195, 312
Eco147I AGGCCT 1 cut(s) 292
Eco91I GGTNACC 1 cut(s) 356
EcoO65I GGTNACC 1 cut(s) 356
EcoT14I CCWWGG 2 cut(s) 195, 312
ErhI CCWWGG 2 cut(s) 195, 312
FaeI CATG 2 cut(s) 13, 107
FaiI YATR 2 cut(s) 11, 105
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 9, 103
Fnu4HI GCNGC 2 cut(s) 150, 308
FokI GGATG 2 cut(s) 85, 121
Fsp4HI GCNGC 2 cut(s) 150, 308
FspBI CTAG 1 cut(s) 412
GluI GCNGC 2 cut(s) 150, 308
HaeIII GGCC 1 cut(s) 292
HapII CCGG 1 cut(s) 333
HgaI GACGC 2 cut(s) 140, 193
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 2 cut(s) 13, 107
HpaII CCGG 1 cut(s) 333
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 175
Hpy99I CGWCG 2 cut(s) 187, 374
HpyAV CCTTC 2 cut(s) 85, 339
HpyCH4V TGCA 2 cut(s) 18, 404
HpyF3I CTNAG 2 cut(s) 127, 215
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 13, 107
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 2 cut(s) 274, 346
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 143
MaeI CTAG 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 356
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 5 cut(s) 48, 262, 265, 367, 370
MmeI TCCRAC 1 cut(s) 136
MspI CCGG 1 cut(s) 333
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 13, 107
NlaIV GGNNCC 1 cut(s) 337
PceI AGGCCT 1 cut(s) 292
PkrI GCNGC 2 cut(s) 151, 309
PspEI GGTNACC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 337
SatI GCNGC 2 cut(s) 150, 308
Sau3AI GATC 1 cut(s) 208
SetI ASST 2 cut(s) 143, 390
SfaNI GCATC 1 cut(s) 143
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 3 cut(s) 147, 150, 300
SspMI CTAG 1 cut(s) 412
StuI AGGCCT 1 cut(s) 292
StyI CCWWGG 2 cut(s) 195, 312
TauI GCSGC 1 cut(s) 152
TscAI CASTG 1 cut(s) 406
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 1 cut(s) 406
XspI CTAG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.