Rroxscaffold_1G00062700

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
84754524 .. 84756720
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062700.1

Sequence Viewer

Length: 378 bp
ATGGGTACTTTCCTCAAGTACTTCATCCTCTTCTTCTGCACCTTCCTCTTCTTCTTCGCTTTCCCCACTTCTTCTTCATCACCCGACGATCAAACCCGTTCCTCCTCCTTCTACACCGCCACCACTACCACCCAGTACCAAGTGTTCTACGTCAAGAACACGATGCCGTTTCTCCTCGACCGCCAACAACGCCGATTAACCAAGAACCACAAGAAACGGGCCGGTAAGAGAAACAAGAATCCGACCAAGAAGTTCAAGAACAATGGGCCTTTCTCCGTCATGCTTCCAAAGGGCTTCGTCCCTCCTTCTGGCTCGTCGCCTTGCCACAATGGAAACCCCAACGCCGTCGTCGTCTTCTGCGACCTAGCTAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.26

Weight (kDa)

10.23

Isoelectric Point (pI)

65.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18335
fragaria_vesca FvH4_3g05631
prunus_persica Prupe.4G080200_v2.0.a1
rosa_laevigata RLG00000032062
rosa_multiflora Rmu_sc0005803.1_g000010 Rmu_sc0008587.1_g000001
rosa_roxburghii Rroxscaffold_1G00062700
rosa_rugosa Rorug05G0014200 Rorug05G0014300
rosa_samantha Rh5DG104100
rosa_wichuraiana Rw5G009480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 117, 181
AfaI GTAC 3 cut(s) 7, 20, 137
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
AoxI GGCC 2 cut(s) 219, 266
AspS9I GGNCC 2 cut(s) 219, 266
AsuHPI GGTGA 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 346
BceAI ACGGC 2 cut(s) 151, 329
BfaI CTAG 2 cut(s) 365, 376
BmcAI AGTACT 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 219, 266
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 94, 164
BsgI GTGCAG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 221, 268
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 221, 268
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 2 cut(s) 117, 181
BspANI GGCC 2 cut(s) 221, 268
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 221
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 35, 53
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 221, 268
BtsCI GGATG 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 219, 266
Csp6I GTAC 3 cut(s) 6, 19, 136
CviAII CATG 1 cut(s) 280
CviJI RGCY 5 cut(s) 221, 268, 294, 312, 368
CviKI_1 RGCY 5 cut(s) 221, 268, 294, 312, 368
CviQI GTAC 3 cut(s) 6, 19, 136
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 35, 53
EarI CTCTTC 2 cut(s) 35, 53
FaeI CATG 1 cut(s) 283
FaiI YATR 1 cut(s) 281
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 279
FokI GGATG 1 cut(s) 11
FspBI CTAG 2 cut(s) 365, 376
HaeIII GGCC 2 cut(s) 221, 268
HapII CCGG 1 cut(s) 222
Hin1II CATG 1 cut(s) 283
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 154, 256
Hpy99I CGWCG 4 cut(s) 89, 319, 350, 353
HpyAV CCTTC 3 cut(s) 52, 118, 315
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 283
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 146, 235, 294
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 365, 376
MaeII ACGT 1 cut(s) 150
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 8 cut(s) 22, 25, 40, 43, 46, 63, 66, 346
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 7 cut(s) 23, 38, 56, 112, 115, 185, 312
MseI TTAA 1 cut(s) 197
MspI CCGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 283
PcsI WCGNNNNNNNCGW 2 cut(s) 348, 357
PfeI GAWTC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 219, 266
PsrI GAACNNNNNNTAC 2 cut(s) 128, 160
RsaI GTAC 3 cut(s) 7, 20, 137
RsaNI GTAC 3 cut(s) 6, 19, 136
SaqAI TTAA 1 cut(s) 197
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 2 cut(s) 219, 266
ScaI AGTACT 1 cut(s) 20
SetI ASST 4 cut(s) 44, 153, 366, 370
SfaNI GCATC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 2 cut(s) 117, 181
SspMI CTAG 2 cut(s) 365, 376
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 177
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 13, 66
TspGWI ACGGA 1 cut(s) 265
XspI CTAG 2 cut(s) 365, 376
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.