Rmu_sc0005803.1_g000010

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005803.1
Physical Location & Seq
Reverse (-)
39396 .. 39770
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005803.1_g000010.1.cds

Sequence Viewer

Length: 375 bp
atgggtactttcctcaagtacttcatcctcttcttctgcaccttcctcttcttcgccttccccactttgtcttcatcacccgatgatcaaacccgttcctcctcctcctacaccgccaccactaccacccagtaccaagtgttctacgtcaagaacacgacgccgtttctcctcgaccgccaacaacgccgattaaccaagaaccacaagaaactggcccgtaagagaaacaagaatccgaccaagaagttcaagaacaatgggcctttctccgtcatgcttccaaagggcttcgtccctccttctggctcgtcgccttgccacaacggaaaccccaacgccgtcgtcgtcttctgcgacctagctaaaccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.1

Weight (kDa)

10.23

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18335
fragaria_vesca FvH4_3g05631
prunus_persica Prupe.4G080200_v2.0.a1
rosa_laevigata RLG00000032062
rosa_multiflora Rmu_sc0005803.1_g000010 Rmu_sc0008587.1_g000001
rosa_roxburghii Rroxscaffold_1G00062700
rosa_rugosa Rorug05G0014200 Rorug05G0014300
rosa_samantha Rh5DG104100
rosa_wichuraiana Rw5G009480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 114, 178
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 3 cut(s) 7, 20, 134
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
AoxI GGCC 2 cut(s) 216, 263
AspS9I GGNCC 2 cut(s) 217, 263
AsuHPI GGTGA 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 63, 343
BceAI ACGGC 2 cut(s) 148, 326
BclI TGATCA 1 cut(s) 85
BfaI CTAG 2 cut(s) 362, 373
BmcAI AGTACT 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 217, 263
BmrI ACTGGG 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 124
BpiI GAAGAC 2 cut(s) 63, 343
BsaHI GRCGYC 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 2 cut(s) 130, 219
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 130, 219
BseRI GAGGAG 3 cut(s) 91, 94, 161
BsgI GTGCAG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 2 cut(s) 218, 265
BsiEI CGRYCG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 218, 265
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 2 cut(s) 114, 178
BspANI GGCC 2 cut(s) 218, 265
BsrI ACTGG 2 cut(s) 130, 219
BssMI GATC 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 35, 53
BstACI GRCGYC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstV2I GAAGAC 2 cut(s) 63, 343
BsuRI GGCC 2 cut(s) 218, 265
BtsCI GGATG 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 217, 263
CseI GACGC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 6, 19, 133
CviAII CATG 1 cut(s) 277
CviJI RGCY 5 cut(s) 218, 265, 291, 309, 365
CviKI_1 RGCY 5 cut(s) 218, 265, 291, 309, 365
CviQI GTAC 3 cut(s) 6, 19, 133
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 35, 53
EarI CTCTTC 2 cut(s) 35, 53
FaeI CATG 1 cut(s) 280
FaiI YATR 1 cut(s) 278
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 85
FokI GGATG 1 cut(s) 11
FspBI CTAG 2 cut(s) 362, 373
HaeIII GGCC 2 cut(s) 218, 265
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 1 cut(s) 280
HinfI GANTC 1 cut(s) 235
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 151, 253
Hpy99I CGWCG 4 cut(s) 163, 316, 347, 350
HpyAV CCTTC 3 cut(s) 52, 67, 312
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 143, 200, 291
MaeI CTAG 2 cut(s) 362, 373
MaeII ACGT 1 cut(s) 147
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 6 cut(s) 22, 25, 40, 43, 63, 343
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 8 cut(s) 23, 38, 56, 109, 112, 115, 182, 309
MseI TTAA 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 280
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 354
PfeI GAWTC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 217, 263
PsrI GAACNNNNNNTAC 2 cut(s) 125, 157
RsaI GTAC 3 cut(s) 7, 20, 134
RsaNI GTAC 3 cut(s) 6, 19, 133
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 217, 263
ScaI AGTACT 1 cut(s) 20
SetI ASST 4 cut(s) 44, 150, 363, 367
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 2 cut(s) 114, 178
SspMI CTAG 2 cut(s) 362, 373
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 174
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 13, 63
TspGWI ACGGA 2 cut(s) 262, 342
XspI CTAG 2 cut(s) 362, 373
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.