Prupe.4G094700_v2.0.a1

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016285
Physical Location & Seq
Reverse (-)
4775415 .. 4776557
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G094700.1

Sequence Viewer

Length: 657 bp
ATGGCCTTTTATATTTTCTTCTTTGGGTTAGTCTTATCTTTTTCTTTGTCAGTTGTCAATGTCATTGCATCTGATCATAGTCCGCTTCAAGATTTCTGCGTTGCAGACACGAGAAGTCGAGTGCTGGTTAATGGCCTAGCTTGCAAGGACCCCAAGACAGTTGAAGCTGCTGATTTTTCATTTGGTGGGCTTCATTTAGAAGGCAACACATCAAACCCAATTGGGTCAAGTGTAACACCAGTAACTGTGTTTCAGCTACCAGGACTCAACACTCTCGGCATTTCTCTTGTCCGTATCGACTATGCACCATCAGGTGTCAATCCTCCGCACACTCATCCTCGCGCCTCCGAAATTATCACAGTCCTGGAAGGCAGCCTTGAAGTTGGGTTTGTGACATCGAGCCCCGAAAATCGTCACATCACCAAGGTGTTGCAGAAGGGTGATGTGTTTGTTTTCCCCATTGGACTTGTGCACTATCAGAGAAATGTAGGATCCGGTCATGCTGTTGCTATTGTAGCTCTCAGCAGCCAAAATCCAGGTGTGGTGATAATTGCTAGTGCTGTGTTTGGGTCCAAGCCTTGCATTGCCAATGACATTCTTGTGAAGGCATTTCATGTTGATAAAGGTGTTATCAATTACCTCCATTCTATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

219

Amino Acids

23.21

Weight (kDa)

6.48

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016285)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10630 FvH4_3g10630
malus_domestica MD05G1269800.v1.1
prunus_persica Prupe.4G094700_v2.0.a1
pyrus_communis pycom05g25270
rosa_chinensis RchiOBHm_Chr5g0017341
rosa_laevigata RLG00000032275
rosa_multiflora Rmu_sc0005223.1_g000005 Rmu_sc0005319.1_g000008
rosa_roxburghii Rroxscaffold_1G00060020
rosa_rugosa Rorug05G0034100
rosa_samantha Rh5AG129200 Rh5BG127000 Rh5CG139800
rosa_wichuraiana Rw5G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 342
AciI CCGC 2 cut(s) 83, 326
AclWI GGATC 2 cut(s) 486, 499
AgsI TTSAA 3 cut(s) 89, 164, 380
AjnI CCWGG 3 cut(s) 259, 363, 535
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 4 cut(s) 140, 167, 256, 518
AluI AGCT 4 cut(s) 140, 167, 256, 518
Alw21I GWGCWC 1 cut(s) 474
Alw44I GTGCAC 1 cut(s) 470
AlwI GGATC 2 cut(s) 486, 499
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 2 cut(s) 3, 133
ApaLI GTGCAC 1 cut(s) 470
ApeKI GCWGC 3 cut(s) 167, 372, 525
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 148, 570
AsuHPI GGTGA 3 cut(s) 412, 452, 556
AvaII GGWCC 2 cut(s) 148, 570
BaeGI GKGCMC 1 cut(s) 474
BamHI GGATCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 404
BauI CACGAG 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 3 cut(s) 154, 384, 537
BccI CCATC 1 cut(s) 316
BciT130I CCWGG 3 cut(s) 261, 365, 537
BclI TGATCA 1 cut(s) 73
BfaI CTAG 2 cut(s) 137, 555
BisI GCNGC 3 cut(s) 168, 373, 526
BlsI GCNGC 3 cut(s) 169, 374, 527
Bme1390I CCNGG 3 cut(s) 261, 365, 537
Bme18I GGWCC 2 cut(s) 148, 570
BmgT120I GGNCC 2 cut(s) 148, 570
BmiI GGNNCC 3 cut(s) 150, 493, 571
BmrFI CCNGG 3 cut(s) 261, 365, 537
BmsI GCATC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 2 cut(s) 63, 582
BseBI CCWGG 3 cut(s) 261, 365, 537
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 334
BseMI GCAATG 2 cut(s) 63, 582
BseMII CTCAG 1 cut(s) 535
BseNI ACTGG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 3 cut(s) 154, 384, 537
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 2 cut(s) 5, 135
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 1 cut(s) 495
BsnI GGCC 2 cut(s) 5, 135
Bsp1286I GDGCHC 2 cut(s) 404, 474
Bsp143I GATC 2 cut(s) 73, 491
BspACI CCGC 2 cut(s) 83, 326
BspANI GGCC 2 cut(s) 5, 135
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 150, 493, 571
BspPI GGATC 2 cut(s) 486, 499
BsrDI GCAATG 2 cut(s) 63, 582
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 2 cut(s) 73, 491
BssSI CACGAG 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 109
Bst2UI CCWGG 3 cut(s) 261, 365, 537
Bst4CI ACNGT 3 cut(s) 160, 247, 361
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 521
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 76, 494
BstMBI GATC 2 cut(s) 73, 491
BstMWI GCNNNNNNNGC 2 cut(s) 141, 515
BstNI CCWGG 3 cut(s) 261, 365, 537
BstSCI CCNGG 3 cut(s) 259, 363, 535
BstSLI GKGCMC 1 cut(s) 474
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 154, 384, 537
BstX2I RGATCY 1 cut(s) 491
BstYI RGATCY 1 cut(s) 491
BsuRI GGCC 2 cut(s) 5, 135
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 148, 570
CviAII CATG 2 cut(s) 500, 614
DdeI CTNAG 1 cut(s) 521
DpnI GATC 2 cut(s) 75, 493
DpnII GATC 2 cut(s) 73, 491
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 148, 570
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 3 cut(s) 259, 363, 535
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 2 cut(s) 503, 617
FaiI YATR 6 cut(s) 12, 78, 303, 501, 615, 650
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FatI CATG 2 cut(s) 499, 613
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 168, 373, 526
FokI GGATG 1 cut(s) 321
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 3 cut(s) 168, 373, 526
FspBI CTAG 2 cut(s) 137, 555
GlaI GCGC 1 cut(s) 343
GluI GCNGC 3 cut(s) 168, 373, 526
HaeIII GGCC 2 cut(s) 5, 135
HapII CCGG 1 cut(s) 495
HhaI GCGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 503, 617
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 1 cut(s) 264
HpaII CCGG 1 cut(s) 495
HphI GGTGA 3 cut(s) 412, 452, 556
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 4 cut(s) 73, 349, 480, 656
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 4 cut(s) 194, 362, 430, 598
HpyCH4III ACNGT 3 cut(s) 160, 247, 361
HpyCH4V TGCA 7 cut(s) 68, 104, 144, 305, 433, 472, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 515
HpyF3I CTNAG 1 cut(s) 521
Hsp92II CATG 2 cut(s) 503, 617
HspAI GCGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 73, 491
Lsp1109I GCAGC 3 cut(s) 154, 384, 537
LweI GCATC 1 cut(s) 77
MaeI CTAG 2 cut(s) 137, 555
MaeIII GTNAC 4 cut(s) 232, 241, 391, 413
MalI GATC 2 cut(s) 75, 493
MboI GATC 2 cut(s) 73, 491
MboII GAAGA 1 cut(s) 10
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 491
MhlI GDGCHC 2 cut(s) 404, 474
MluCI AATT 4 cut(s) 219, 351, 549, 634
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 4 cut(s) 333, 348, 355, 650
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 425, 599
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 3 cut(s) 261, 365, 537
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 3 cut(s) 261, 365, 537
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 141, 515
NdeII GATC 2 cut(s) 73, 491
NlaIII CATG 2 cut(s) 503, 617
NlaIV GGNNCC 3 cut(s) 150, 493, 571
NmeAIII GCCGAG 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 391, 413
OliI CACNNNNGTG 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 3 cut(s) 169, 374, 527
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 3 cut(s) 259, 363, 535
PspGI CCWGG 3 cut(s) 259, 363, 535
PspN4I GGNNCC 3 cut(s) 150, 493, 571
PspPI GGNCC 2 cut(s) 148, 570
PspPPI RGGWCCY 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 491
RseI CAYNNNNRTG 2 cut(s) 425, 599
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 168, 373, 526
Sau3AI GATC 2 cut(s) 73, 491
Sau96I GGNCC 2 cut(s) 148, 570
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 3 cut(s) 261, 365, 537
SduI GDGCHC 2 cut(s) 404, 474
SetI ASST 9 cut(s) 142, 169, 258, 316, 429, 520, 541, 628, 642
SfaNI GCATC 1 cut(s) 77
SinI GGWCC 2 cut(s) 148, 570
SmiMI CAYNNNNRTG 2 cut(s) 425, 599
Sse9I AATT 4 cut(s) 219, 351, 549, 634
SsiI CCGC 2 cut(s) 83, 326
SspMI CTAG 2 cut(s) 137, 555
StyD4I CCNGG 3 cut(s) 259, 363, 535
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 3 cut(s) 160, 247, 361
TaqI TCGA 3 cut(s) 118, 297, 398
TasI AATT 4 cut(s) 219, 351, 549, 634
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 2 cut(s) 391, 413
TseI GCWGC 3 cut(s) 167, 372, 525
Tsp45I GTSAC 2 cut(s) 391, 413
TspDTI ATGAA 3 cut(s) 168, 182, 602
TspGWI ACGGA 1 cut(s) 281
VneI GTGCAC 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 148, 570
XspI CTAG 2 cut(s) 137, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.