Rmu_sc0005319.1_g000008

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005319.1
OG0016285
Physical Location & Seq
Forward (+)
22117 .. 22650
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005319.1_g000008.1.cds

Sequence Viewer

Length: 534 bp
ctgctgaatggcctagcttgcaaggaccccaagacagttaaagccaacgatttttcatttggtgggcttcacttagcagccaatacatcaaacccaattgggtcaagtgtgacaccggtgaccgtatcccaacttccaggactcaatactcttggcatttcactagtccgcatcgactatgcaccatcaggcatcaaccctccccacattcatcctcgtgcctccgaaatcttgaccatccttgaaggctgccttgaagttgggttcgtaacgtcgagccccgaaaatcgtcacatcaccaaggtgttgcagaagggcgatgtgtttgttttcccaatcggactcgtccactaccagagaaatgtaggaactggcaatgctgttgctattgctgccctgagcagccaaaatcctggtgtggtaataattgcaagtgctgtctttgggtccaggcctagtattggtagtgagattctcgtaaaggctttgcaagttgatcaaggggttgtcaattacctccagtccatattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

177

Amino Acids

18.52

Weight (kDa)

8.02

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016285)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10630 FvH4_3g10630
malus_domestica MD05G1269800.v1.1
prunus_persica Prupe.4G094700_v2.0.a1
pyrus_communis pycom05g25270
rosa_chinensis RchiOBHm_Chr5g0017341
rosa_laevigata RLG00000032275
rosa_multiflora Rmu_sc0005223.1_g000005 Rmu_sc0005319.1_g000008
rosa_roxburghii Rroxscaffold_1G00060020
rosa_rugosa Rorug05G0034100
rosa_samantha Rh5AG129200 Rh5BG127000 Rh5CG139800
rosa_wichuraiana Rw5G011160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 461
AgeI ACCGGT 1 cut(s) 115
AgsI TTSAA 2 cut(s) 245, 257
AhlI ACTAGT 1 cut(s) 163
AjnI CCWGG 3 cut(s) 136, 412, 449
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AoxI GGCC 2 cut(s) 10, 452
ApeKI GCWGC 4 cut(s) 77, 249, 392, 402
AsiGI ACCGGT 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 25, 447
AsuHPI GGTGA 2 cut(s) 130, 289
AvaII GGWCC 2 cut(s) 25, 447
BanII GRGCYC 1 cut(s) 281
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
BauI CACGAG 1 cut(s) 216
BbvI GCAGC 4 cut(s) 89, 236, 379, 414
BccI CCATC 2 cut(s) 193, 245
BciT130I CCWGG 3 cut(s) 138, 414, 451
BciVI GTATCC 1 cut(s) 136
BclI TGATCA 1 cut(s) 496
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 3 cut(s) 14, 164, 456
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 4 cut(s) 78, 250, 393, 403
BlsI GCNGC 4 cut(s) 79, 251, 394, 404
Bme1390I CCNGG 3 cut(s) 138, 414, 451
Bme18I GGWCC 2 cut(s) 25, 447
BmgT120I GGNCC 2 cut(s) 25, 447
BmiI GGNNCC 2 cut(s) 27, 448
BmrFI CCNGG 3 cut(s) 138, 414, 451
BmsI GCATC 2 cut(s) 180, 201
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 376, 520
Bse3DI GCAATG 1 cut(s) 382
BseBI CCWGG 3 cut(s) 138, 414, 451
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 211, 237
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 376, 520
BseXI GCAGC 4 cut(s) 89, 236, 379, 414
BshFI GGCC 2 cut(s) 12, 454
BshTI ACCGGT 1 cut(s) 115
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 461
BsnI GGCC 2 cut(s) 12, 454
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 496
BspACI CCGC 1 cut(s) 169
BspANI GGCC 2 cut(s) 12, 454
BspCNI CTCAG 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 27, 448
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 2 cut(s) 376, 520
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 496
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 138, 414, 451
Bst4CI ACNGT 2 cut(s) 37, 124
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 73, 398
BstEII GGTNACC 1 cut(s) 118
BstF5I GGATG 2 cut(s) 211, 237
BstKTI GATC 1 cut(s) 499
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 2 cut(s) 18, 392
BstNI CCWGG 3 cut(s) 138, 414, 451
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 136, 412, 449
BstV1I GCAGC 4 cut(s) 89, 236, 379, 414
BstXI CCANNNNNNTGG 1 cut(s) 413
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 12, 454
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 211, 237
Cac8I GCNNGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 25, 447
CspAI ACCGGT 1 cut(s) 115
DdeI CTNAG 2 cut(s) 73, 398
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 25, 447
Eco91I GGTNACC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 118
EcoRII CCWGG 3 cut(s) 136, 412, 449
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 300
FaiI YATR 2 cut(s) 180, 527
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 4 cut(s) 78, 250, 393, 403
FokI GGATG 2 cut(s) 198, 224
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 4 cut(s) 78, 250, 393, 403
FspBI CTAG 3 cut(s) 14, 164, 456
GluI GCNGC 4 cut(s) 78, 250, 393, 403
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 2 cut(s) 12, 454
HapII CCGG 1 cut(s) 116
HinfI GANTC 3 cut(s) 141, 342, 472
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 130, 289
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 226, 341
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 239, 307
HpyCH4III ACNGT 2 cut(s) 37, 124
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 5 cut(s) 21, 182, 310, 431, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 392
HpyF3I CTNAG 2 cut(s) 73, 398
HpySE526I ACGT 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 1 cut(s) 496
Lsp1109I GCAGC 4 cut(s) 89, 236, 379, 414
LweI GCATC 2 cut(s) 180, 201
MaeI CTAG 3 cut(s) 14, 164, 456
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 4 cut(s) 109, 118, 268, 290
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MfeI CAATTG 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 3 cut(s) 96, 426, 511
MlyI GAGTC 2 cut(s) 135, 336
MnlI CCTC 4 cut(s) 210, 225, 232, 527
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 216, 302
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 3 cut(s) 138, 414, 451
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 3 cut(s) 138, 414, 451
MwoI GCNNNNNNNGC 2 cut(s) 18, 392
NdeII GATC 1 cut(s) 496
NlaIV GGNNCC 2 cut(s) 27, 448
NmuCI GTSAC 3 cut(s) 109, 118, 290
OliI CACNNNNGTG 1 cut(s) 302
PceI AGGCCT 1 cut(s) 454
PfeI GAWTC 1 cut(s) 472
PfoI TCCNGGA 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 115
PkrI GCNGC 4 cut(s) 79, 251, 394, 404
PleI GAGTC 2 cut(s) 135, 336
PpsI GAGTC 2 cut(s) 135, 336
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 3 cut(s) 136, 412, 449
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 3 cut(s) 136, 412, 449
PspN4I GGNNCC 2 cut(s) 27, 448
PspPI GGNCC 2 cut(s) 25, 447
PspPPI RGGWCCY 1 cut(s) 25
RseI CAYNNNNRTG 2 cut(s) 216, 302
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 4 cut(s) 78, 250, 393, 403
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 2 cut(s) 25, 447
SchI GAGTC 2 cut(s) 135, 336
ScrFI CCNGG 3 cut(s) 138, 414, 451
SduI GDGCHC 1 cut(s) 281
SetI ASST 4 cut(s) 19, 275, 306, 519
SfaNI GCATC 2 cut(s) 180, 201
SgrAI CRCCGGYG 1 cut(s) 115
SinI GGWCC 2 cut(s) 25, 447
SmiMI CAYNNNNRTG 2 cut(s) 216, 302
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 3 cut(s) 96, 426, 511
SseBI AGGCCT 1 cut(s) 454
SsiI CCGC 1 cut(s) 169
SspMI CTAG 3 cut(s) 14, 164, 456
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 3 cut(s) 136, 412, 449
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 37, 124
TaiI ACGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 174, 275
TasI AATT 3 cut(s) 96, 426, 511
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseFI GTSAC 3 cut(s) 109, 118, 290
TseI GCWGC 4 cut(s) 77, 249, 392, 402
Tsp45I GTSAC 3 cut(s) 109, 118, 290
TspDTI ATGAA 2 cut(s) 45, 200
VpaK11BI GGWCC 2 cut(s) 25, 447
XspI CTAG 3 cut(s) 14, 164, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.