Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006798

Physical Location & Seq

Genomic Coordinates Forward (+)

6998764 .. 6999921

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G127300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCCGATTCAAACCCTCTCCTCTCTGAAATTAACTCGGCCGAGTCAGAACCCTCCCTCGACTCTAGGATCGAACTGTTCATCGGAGATTTCGGGTGGGCCCAATTCCTCCAAGCTTTCCTTGTATCGTTTTCATGGTTCTTTGACGCCCAGCAAACCTTCATCACCGTCTTCACAGACGCTCAGCCAACATGGCACTGCACCCAACTCAATGATCCTCACAACTCATGCAACTCAGCCTCAAACGTTTGCCAACTTCCTCAGAATTCATGGGCTTGGGACCGGCCTAGACACACTTCCACCATCTCCGAATGGGCCCTGCAGTGTTCACCGTCATTCGTCCAGGGTATGCCCGCCTCCGCCTTCTTTATGGGCTGCTTAATAGGCGGGCTTGCCTTGGCCACACTTGCTGACACGTCCCTGGGCCGCAAAAACATGCTCTTCCTCACATGTCTCGTCATGTCTTTGTCCACCTTTCTCACCGCCTTCTCCTCCAACATATGGATCTACTCCATCCTCCGATTCATCACTGGGTTTGGCCGTGCTACCATCGGCACCTCTGCTCTTGTCCTATCAACGGAGCTTGTCGGGAGGCGGTGGCGTGGCCAGGTAGGTGTCATTGGCTTCTTCTGCTTCACTCTAGGGTGGCTCTTCGTCCAAGGCCGTAAAGAAGAAGCAATTGCAACACTAAAACACATTGCACCCATCAATGGTACTACCACTAAAACACCACTCACCTCTAGCTTCTTTTCGAACTTGTCCTTTGAGCAAGAAACAAGGAACGTTGATCTCGGCGATCAACGTTCTGGTGAAGAGCACATGGGCTTTTCGGAGATTGTCAACGGTTGTGGCAATAGGGTTTGGTGTTGGAATGGTATATTATGGAATGCAATTAGCCTTGGGAAGCTTGGACTTCAATCTCTACTTAAGTGTCACGTTCAATGGCTTGTCAGAGCTACCAGCTTCGTTAATCACATTAGTCTTCATTGCCAAAATGAACAGGAAGACCTCACTCTTGGTTTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0009705 GO:0009987 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0033554 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070417 GO:0071702 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

343

Amino Acids

38.09

Weight (kDa)

5.83

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16390
fragaria_vesca	FvH4_3g14010
malus_domestica	MD05G1238900.v1.1 MD10G1217000.v1.1
prunus_persica	Prupe.4G127100_v2.0.a1 Prupe.4G127200_v2.0.a1 Prupe.4G127300_v2.0.a1
pyrus_communis	pycom05g21490 pycom10g18300
rosa_chinensis	RchiOBHm_Chr5g0023241 RchiOBHm_Chr5g0023261 RchiOBHm_Chr5g0023301 RchiOBHm_Chr5g0023311
rosa_laevigata	RLG00000032713
rosa_multiflora	Rmu_sc0004693.1_g000003 Rmu_sc0009954.1_g000012 Rmu_sc0009954.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056020 Rroxscaffold_1G00056050
rosa_rugosa	Rorug05G0078300
rosa_samantha	Rh5BG164100 Rh5BG164200 Rh5CG179300 Rh5DG165800 Rh5DG165900
rosa_wichuraiana	Rw5G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	554
AccB7I	CCANNNNNTGG	1 cut(s)	501
AciI	CCGC	6 cut(s)	354, 360, 387, 427, 483, 595
AclI	AACGTT	3 cut(s)	246, 783, 802
AclWI	GGATC	3 cut(s)	77, 209, 512
AcoI	YGGCCR	5 cut(s)	3, 39, 399, 538, 604
AcsI	RAATTY	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	3 cut(s)	501, 577, 710
AflII	CTTAAG	1 cut(s)	926
AflIII	ACRYGT	2 cut(s)	414, 449
AgsI	TTSAA	3 cut(s)	12, 917, 941
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	3 cut(s)	342, 420, 606
AluBI	AGCT	6 cut(s)	116, 583, 744, 907, 956, 963
AluI	AGCT	6 cut(s)	116, 583, 744, 907, 956, 963
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	3 cut(s)	77, 209, 512
ApaI	GGGCCC	2 cut(s)	103, 319
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	6 cut(s)	99, 100, 280, 315, 316, 424
AsuHPI	GGTGA	5 cut(s)	157, 321, 472, 727, 821
AsuII	TTCGAA	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	2 cut(s)	103, 319
BalI	TGGCCA	2 cut(s)	401, 606
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	103, 319
BbsI	GAAGAC	3 cut(s)	163, 974, 1011
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	4 cut(s)	311, 521, 557, 713
BceAI	ACGGC	2 cut(s)	525, 648
BciT130I	CCWGG	3 cut(s)	344, 422, 608
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	5 cut(s)	66, 288, 641, 741, 1027
BfmI	CTRYAG	1 cut(s)	320
BfrI	CTTAAG	1 cut(s)	926
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	376, 427
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	2 cut(s)	377, 428
Bme1390I	CCNGG	3 cut(s)	344, 422, 608
Bme18I	GGWCC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	6 cut(s)	99, 100, 280, 315, 316, 424
BmiI	GGNNCC	4 cut(s)	101, 281, 317, 556
BmrFI	CCNGG	3 cut(s)	344, 422, 608
BmrI	ACTGGG	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	3 cut(s)	163, 974, 1011
Bpu1102I	GCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	752
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	6 cut(s)	343, 396, 420, 421, 658, 898
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 577, 710
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	2 cut(s)	696, 985
BseBI	CCWGG	3 cut(s)	344, 422, 608
BseDI	CCNNGG	6 cut(s)	343, 396, 420, 421, 658, 898
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	3 cut(s)	501, 577, 710
BseMI	GCAATG	2 cut(s)	696, 985
BseMII	CTCAG	3 cut(s)	197, 249, 275
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	2 cut(s)	11, 481
BseSI	GKGCMC	2 cut(s)	103, 319
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	819
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	293, 403
BslI	CCNNNNNNNGG	3 cut(s)	501, 577, 710
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	293, 403
BsmI	GAATGC	1 cut(s)	892
Bsp119I	TTCGAA	1 cut(s)	752
Bsp120I	GGGCCC	2 cut(s)	99, 315
Bsp1286I	GDGCHC	3 cut(s)	103, 319, 819
Bsp143I	GATC	5 cut(s)	69, 214, 504, 787, 796
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	6 cut(s)	354, 360, 387, 427, 483, 595
BspCNI	CTCAG	3 cut(s)	196, 248, 274
BspLI	GGNNCC	4 cut(s)	101, 281, 317, 556
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	3 cut(s)	77, 209, 512
BspQI	GCTCTTC	3 cut(s)	446, 656, 807
BspT104I	TTCGAA	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	554
BspTI	CTTAAG	1 cut(s)	926
BsrDI	GCAATG	2 cut(s)	696, 985
BsrFI	RCCGGY	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	6 cut(s)	343, 396, 420, 421, 658, 898
BssMI	GATC	5 cut(s)	69, 214, 504, 787, 796
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	3 cut(s)	396, 658, 898
Bst2UI	CCWGG	3 cut(s)	344, 422, 608
Bst4CI	ACNGT	4 cut(s)	78, 169, 333, 845
Bst6I	CTCTTC	3 cut(s)	446, 656, 807
BstACI	GRCGYC	1 cut(s)	147
BstAFI	CTTAAG	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	354, 389, 393
BstDEI	CTNAG	3 cut(s)	183, 235, 261
BstF5I	GGATG	1 cut(s)	513
BstKTI	GATC	5 cut(s)	72, 217, 507, 790, 799
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	5 cut(s)	69, 214, 504, 787, 796
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 384, 407, 630
BstNI	CCWGG	3 cut(s)	344, 422, 608
BstNSI	RCATGY	2 cut(s)	439, 453
BstSCI	CCNGG	3 cut(s)	342, 420, 606
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	2 cut(s)	103, 319
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	3 cut(s)	163, 974, 1011
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
BstZI	CGGCCG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	513
BtsI	GCAGTG	2 cut(s)	196, 329
BtsIMutI	CAGTG	3 cut(s)	196, 329, 528
Cac8I	GCNNGC	3 cut(s)	354, 389, 393
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	6 cut(s)	99, 100, 280, 315, 316, 424
CseI	GACGC	2 cut(s)	155, 188
Csp6I	GTAC	1 cut(s)	714
CspCI	CAANNNNNGTGG	2 cut(s)	829, 864
CviAII	CATG	8 cut(s)	135, 192, 228, 270, 436, 450, 460, 820
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	3 cut(s)	183, 235, 261
DpnI	GATC	5 cut(s)	71, 216, 506, 789, 798
DpnII	GATC	5 cut(s)	69, 214, 504, 787, 796
EaeI	YGGCCR	5 cut(s)	3, 39, 399, 538, 604
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	446, 656, 807
EarI	CTCTTC	3 cut(s)	446, 656, 807
EciI	GGCGGA	1 cut(s)	349
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	396, 658, 898
Eco24I	GRGCYC	2 cut(s)	103, 319
Eco47I	GGWCC	1 cut(s)	280
Eco52I	CGGCCG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	342, 420, 606
EcoT14I	CCWWGG	3 cut(s)	396, 658, 898
EcoT38I	GRGCYC	2 cut(s)	103, 319
ErhI	CCWWGG	3 cut(s)	396, 658, 898
FaeI	CATG	8 cut(s)	138, 195, 231, 273, 439, 453, 463, 823
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	293, 403
FatI	CATG	8 cut(s)	134, 191, 227, 269, 435, 449, 459, 819
FauI	CCCGC	2 cut(s)	361, 380
FauNDI	CATATG	1 cut(s)	500
Fnu4HI	GCNGC	2 cut(s)	376, 427
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	2 cut(s)	103, 319
Fsp4HI	GCNGC	2 cut(s)	376, 427
FspBI	CTAG	5 cut(s)	66, 288, 641, 741, 1027
GluI	GCNGC	2 cut(s)	376, 427
GsaI	CCCAGC	1 cut(s)	154
HapII	CCGG	1 cut(s)	283
HgaI	GACGC	2 cut(s)	155, 188
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	8 cut(s)	138, 195, 231, 273, 439, 453, 463, 823
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HindIII	AAGCTT	2 cut(s)	114, 905
HinfI	GANTC	4 cut(s)	8, 44, 62, 522
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	5 cut(s)	157, 321, 472, 727, 821
Hpy166II	GTNNAC	3 cut(s)	329, 471, 841
Hpy188I	TCNGA	8 cut(s)	28, 49, 86, 264, 310, 521, 832, 953
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	3 cut(s)	329, 471, 841
HpyAV	CCTTC	3 cut(s)	169, 373, 496
HpyCH4III	ACNGT	4 cut(s)	78, 169, 333, 845
HpyCH4IV	ACGT	5 cut(s)	246, 416, 783, 802, 936
HpyCH4V	TGCA	6 cut(s)	201, 231, 322, 683, 701, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 384, 407, 630
HpyF3I	CTNAG	3 cut(s)	183, 235, 261
HpySE526I	ACGT	5 cut(s)	246, 416, 783, 802, 936
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	8 cut(s)	138, 195, 231, 273, 439, 453, 463, 823
Kzo9I	GATC	5 cut(s)	69, 214, 504, 787, 796
LguI	GCTCTTC	3 cut(s)	446, 656, 807
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	5 cut(s)	66, 288, 641, 741, 1027
MaeII	ACGT	5 cut(s)	246, 416, 783, 802, 936
MaeIII	GTNAC	1 cut(s)	932
MalI	GATC	5 cut(s)	71, 216, 506, 789, 798
MboI	GATC	5 cut(s)	69, 214, 504, 787, 796
MboII	GAAGA	8 cut(s)	163, 433, 619, 643, 683, 824, 974, 1016
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	3 cut(s)	103, 319, 819
MlsI	TGGCCA	2 cut(s)	401, 606
MluCI	AATT	5 cut(s)	30, 104, 265, 678, 891
MluNI	TGGCCA	2 cut(s)	401, 606
MlyI	GAGTC	2 cut(s)	53, 56
MmeI	TCCRAC	2 cut(s)	519, 848
Mox20I	TGGCCA	2 cut(s)	401, 606
MscI	TGGCCA	2 cut(s)	401, 606
MseI	TTAA	4 cut(s)	33, 380, 927, 969
Msp20I	TGGCCA	2 cut(s)	401, 606
MspCI	CTTAAG	1 cut(s)	926
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	3 cut(s)	344, 422, 608
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	3 cut(s)	344, 422, 608
MwoI	GCNNNNNNNGC	4 cut(s)	193, 384, 407, 630
NdeI	CATATG	1 cut(s)	500
NdeII	GATC	5 cut(s)	69, 214, 504, 787, 796
NlaIII	CATG	8 cut(s)	138, 195, 231, 273, 439, 453, 463, 823
NlaIV	GGNNCC	4 cut(s)	101, 281, 317, 556
NmeAIII	GCCGAG	3 cut(s)	17, 67, 771
NmuCI	GTSAC	1 cut(s)	932
NspI	RCATGY	2 cut(s)	439, 453
NspV	TTCGAA	1 cut(s)	752
PasI	CCCWGGG	1 cut(s)	421
PciI	ACATGT	1 cut(s)	449
PciSI	GCTCTTC	3 cut(s)	446, 656, 807
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	8, 522
PflMI	CCANNNNNTGG	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	377, 428
PleI	GAGTC	2 cut(s)	52, 56
PpsI	GAGTC	2 cut(s)	52, 56
PscI	ACATGT	1 cut(s)	449
Psp1406I	AACGTT	3 cut(s)	246, 783, 802
Psp6I	CCWGG	3 cut(s)	342, 420, 606
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	3 cut(s)	342, 420, 606
PspN4I	GGNNCC	4 cut(s)	101, 281, 317, 556
PspOMI	GGGCCC	2 cut(s)	99, 315
PspPI	GGNCC	6 cut(s)	99, 100, 280, 315, 316, 424
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	504
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
SapI	GCTCTTC	3 cut(s)	446, 656, 807
SaqAI	TTAA	4 cut(s)	33, 380, 927, 969
SatI	GCNGC	2 cut(s)	376, 427
Sau3AI	GATC	5 cut(s)	69, 214, 504, 787, 796
Sau96I	GGNCC	6 cut(s)	99, 100, 280, 315, 316, 424
SchI	GAGTC	2 cut(s)	53, 56
ScrFI	CCNGG	3 cut(s)	344, 422, 608
SduI	GDGCHC	3 cut(s)	103, 319, 819
SfcI	CTRYAG	1 cut(s)	320
SfuI	TTCGAA	1 cut(s)	752
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	5 cut(s)	30, 104, 265, 678, 891
SsiI	CCGC	6 cut(s)	354, 360, 387, 427, 483, 595
SspMI	CTAG	5 cut(s)	66, 288, 641, 741, 1027
StyD4I	CCNGG	3 cut(s)	342, 420, 606
StyI	CCWWGG	3 cut(s)	396, 658, 898
TaaI	ACNGT	4 cut(s)	78, 169, 333, 845
TaiI	ACGT	5 cut(s)	249, 419, 786, 805, 939
TaqI	TCGA	3 cut(s)	60, 72, 752
TasI	AATT	5 cut(s)	30, 104, 265, 678, 891
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	8, 522
Tru1I	TTAA	4 cut(s)	33, 380, 927, 969
Tru9I	TTAA	4 cut(s)	33, 380, 927, 969
TscAI	CASTG	3 cut(s)	203, 329, 535
TseFI	GTSAC	1 cut(s)	932
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	932
TspDTI	ATGAA	7 cut(s)	70, 123, 151, 258, 514, 974, 1011
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	3 cut(s)	203, 329, 535
Van91I	CCANNNNNTGG	1 cut(s)	501
Vha464I	CTTAAG	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	2 cut(s)	439, 453
XspI	CTAG	5 cut(s)	66, 288, 641, 741, 1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.