RchiOBHm_Chr5g0023241

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
17259339 .. 17260562
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30313

Sequence Viewer

Length: 1224 bp
ATGTCAAAATACGTCGTAAAAGGGGCCCTCGAGTGTTCTGGGTCGGTCGTCACCGGCCTGCCGGCCTCCTCCTTCTTCATGGGGTGCCTGATCGGAGGACTCGCCCTCCCCACACTAGCCAATTCCTCACTCGGCCGAAAAAAGATGCTCTTCCTCTCGTGTCTCATGATGTCTATCACCACCCTCCTCACCACCTTCTCCACCAGCATATGGATCTATTCCTTCTTGAGATTCGTCACCGGCTTCGCCCGCACCACCATCGGCACGTCAGCGCTAGTCTTGTCCACCGAGCTGGTAGGCAAGCGGTGGCGTGGCCAGGTGGGTGTACTAGGTTTCCTTTGCTTCACATTAGGGTTTCTCTCCCTGCCAGCTATAGCTTACACCCATCAAAGCCACTCATGGAGAACACTCTACTTCTGGACTTCAATTCCTACTCTCTTTTACTCCATTCTCGTCCATTTCCTGGTCCGAGAATCGCCCCGGTGGCTATTCGTCCGGGGCCGCAAAGAAGACGCCATCTCAACCCTAAAATGTATTTCACCAAGCATAACCATGAGCTTCTCGAGCTTGTCGTTCGAGCAAGAGACTTGGAATGTGGATCTCTACTCTGCAATCGGGGTTTTGGTAAAGAGAAAATGGGCTTTTCAGAGACTTTGCGCGGTCATGGGAACGGGATTTGGAATCGGAATGGTGTACTACGGCTTGCCGTTAGCTTTGGGGAGCTTGAACTTCAACCTTTACTTGAGTGTCACGTTGAACGCCTTGTCCGAGCTACCTGCTTCTTTAGTCACTTTTTTCCTAATTGGGAAACTGAACAGGAAAAGCTCGCTACTGGTTTTCACTTTTCTCAGTGGAGCTTGTAGCATTCTCTCGGTGCTAAAAGGTTTTAATCCGTGTCCAGAGTTACAAATCGGGTTAGAGCTTGTGTCTTTCTTTAGTGCTTCTTTAGCCTTGAATGTGTTGCTTATATTCACGATTGAGCTCTTCCCAACGTGCGTGAGGTACTCGGCTCTCTCGATGGTGAGGCAGGCGGTGGTGTTGGGAGGAGTTTTCAGCCCGATGCTGGAGGCGGCTGGGAGGGAAAACGGCGGGGTTCTGTCCTATGGGGTGTTTGGGGTTGTGGTGGGGGTTTGTGGATTGTTTGTTGTTTGTTTGCCGGAGACGAGAGGGAGAGGGATTTGTGATACAATGGATGAGGAAGAGCACAAAGAGACATGCAGCTAA

Protein Analysis

407

Amino Acids

44.46

Weight (kDa)

9.03

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 15 - 392 2.6e-24 Sugar (and other) transporter
MFS_1 PF07690 17 - 353 2.1e-18 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 784
AccB1I GGYRCC 1 cut(s) 84
AccB7I CCANNNNNTGG 2 cut(s) 210, 463
AccII CGCG 1 cut(s) 659
AciI CCGC 7 cut(s) 250, 304, 502, 659, 1031, 1070, 1089
AclWI GGATC 2 cut(s) 221, 606
AcoI YGGCCR 2 cut(s) 133, 313
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 3 cut(s) 327, 695, 1004
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 3 cut(s) 210, 463, 1063
AgsI TTSAA 5 cut(s) 426, 727, 733, 757, 955
AjiI CACGTC 1 cut(s) 267
AjnI CCWGG 2 cut(s) 315, 462
AloI GAACNNNNNNTCC 2 cut(s) 749, 781
Alw21I GWGCWC 2 cut(s) 984, 1206
Alw26I GTCTC 5 cut(s) 167, 578, 643, 1154, 1205
AlwI GGATC 2 cut(s) 221, 606
Ama87I CYCGRG 2 cut(s) 29, 562
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 6 cut(s) 24, 55, 63, 133, 313, 499
ApaI GGGCCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 1218
AspLEI GCGC 2 cut(s) 274, 659
AspS9I GGNCC 4 cut(s) 24, 25, 466, 499
AsuC2I CCSGG 2 cut(s) 481, 497
AsuHPI GGTGA 6 cut(s) 43, 169, 181, 229, 531, 1033
AvaI CYCGRG 2 cut(s) 29, 562
AvaII GGWCC 1 cut(s) 466
BaeGI GKGCMC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 315
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 2 cut(s) 28, 984
BauI CACGAG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 984, 1206
BccI CCATC 4 cut(s) 266, 393, 524, 1012
BceAI ACGGC 3 cut(s) 691, 715, 1102
BcgI CGANNNNNNTGC 4 cut(s) 241, 275, 758, 792
BciT130I CCWGG 2 cut(s) 317, 464
BcnI CCSGG 2 cut(s) 481, 497
BcoDI GTCTC 5 cut(s) 167, 578, 643, 1154, 1205
BfaI CTAG 3 cut(s) 116, 275, 329
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 784
BglI GCCNNNNNGGC 1 cut(s) 484
BisI GCNGC 3 cut(s) 502, 1071, 1219
BlsI GCNGC 3 cut(s) 503, 1072, 1220
Bme1390I CCNGG 4 cut(s) 317, 464, 481, 497
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 2 cut(s) 29, 562
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 4 cut(s) 24, 25, 466, 499
BmiI GGNNCC 4 cut(s) 25, 26, 86, 500
BmrFI CCNGG 4 cut(s) 317, 464, 481, 497
BmsI GCATC 2 cut(s) 135, 1050
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 1085
BpuEI CTTGAG 2 cut(s) 247, 763
BpuMI CCSGG 2 cut(s) 481, 497
BsaBI GATNNNNATC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 479, 496
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 463, 1063
Bse118I RCCGGY 3 cut(s) 53, 61, 239
Bse1I ACTGG 1 cut(s) 837
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 2 cut(s) 317, 464
BseDI CCNNGG 2 cut(s) 479, 496
BseGI GGATG 1 cut(s) 1198
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 3 cut(s) 210, 463, 1063
BseMII CTCAG 1 cut(s) 862
BseNI ACTGG 1 cut(s) 837
BseRI GAGGAG 3 cut(s) 58, 176, 1059
BseSI GKGCMC 1 cut(s) 28
BseX3I CGGCCG 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 1073
Bsh1236I CGCG 1 cut(s) 659
Bsh1285I CGRYCG 2 cut(s) 48, 136
BshFI GGCC 6 cut(s) 26, 57, 65, 135, 315, 501
BshNI GGYRCC 1 cut(s) 84
BsiEI CGRYCG 2 cut(s) 48, 136
BsiHKAI GWGCWC 2 cut(s) 984, 1206
BsiHKCI CYCGRG 2 cut(s) 29, 562
BsiSI CCGG 6 cut(s) 54, 62, 240, 481, 496, 1157
BslI CCNNNNNNNGG 3 cut(s) 210, 463, 1063
BsmAI GTCTC 5 cut(s) 167, 578, 643, 1154, 1205
BsmBI CGTCTC 1 cut(s) 1154
BsmI GAATGC 1 cut(s) 864
BsnI GGCC 6 cut(s) 26, 57, 65, 135, 315, 501
BsoBI CYCGRG 2 cut(s) 29, 562
Bsp120I GGGCCC 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 28, 984, 1206
Bsp143I GATC 3 cut(s) 90, 213, 598
BspACI CCGC 7 cut(s) 250, 304, 502, 659, 1031, 1070, 1089
BspANI GGCC 6 cut(s) 26, 57, 65, 135, 315, 501
BspCNI CTCAG 1 cut(s) 861
BspFNI CGCG 1 cut(s) 659
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 4 cut(s) 25, 26, 86, 500
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 2 cut(s) 221, 606
BspQI GCTCTTC 3 cut(s) 155, 989, 1194
BspT107I GGYRCC 1 cut(s) 84
BsrFI RCCGGY 3 cut(s) 53, 61, 239
BsrI ACTGG 1 cut(s) 837
BssAI RCCGGY 3 cut(s) 53, 61, 239
BssECI CCNNGG 2 cut(s) 479, 496
BssMI GATC 3 cut(s) 90, 213, 598
BssNI GRCGYC 1 cut(s) 513
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 317, 464
Bst6I CTCTTC 3 cut(s) 155, 989, 1194
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 8 cut(s) 59, 63, 250, 302, 369, 704, 827, 1029
BstDEI CTNAG 1 cut(s) 848
BstF5I GGATG 1 cut(s) 1198
BstFNI CGCG 1 cut(s) 659
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 2 cut(s) 274, 659
BstKTI GATC 3 cut(s) 93, 216, 601
BstMAI GTCTC 5 cut(s) 167, 578, 643, 1154, 1205
BstMBI GATC 3 cut(s) 90, 213, 598
BstMCI CGRYCG 2 cut(s) 48, 136
BstMWI GCNNNNNNNGC 4 cut(s) 249, 484, 564, 947
BstNI CCWGG 2 cut(s) 317, 464
BstNSI RCATGY 1 cut(s) 1218
BstSCI CCNGG 4 cut(s) 315, 462, 479, 495
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 28
BstUI CGCG 1 cut(s) 659
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 213, 598
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 2 cut(s) 213, 598
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 6 cut(s) 26, 57, 65, 135, 315, 501
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 1198
BtsIMutI CAGTG 1 cut(s) 856
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 8 cut(s) 59, 63, 250, 302, 369, 704, 827, 1029
CciI TCATGA 1 cut(s) 165
CfoI GCGC 2 cut(s) 274, 659
Cfr10I RCCGGY 3 cut(s) 53, 61, 239
Cfr13I GGNCC 4 cut(s) 24, 25, 466, 499
CseI GACGC 1 cut(s) 521
Csp6I GTAC 3 cut(s) 326, 694, 1003
CviAII CATG 6 cut(s) 79, 166, 399, 553, 664, 1215
CviQI GTAC 3 cut(s) 326, 694, 1003
DdeI CTNAG 1 cut(s) 848
DpnI GATC 3 cut(s) 92, 215, 600
DpnII GATC 3 cut(s) 90, 213, 598
EaeI YGGCCR 2 cut(s) 133, 313
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 3 cut(s) 155, 989, 1194
EarI CTCTTC 3 cut(s) 155, 989, 1194
Ecl136II GAGCTC 1 cut(s) 982
EclXI CGGCCG 1 cut(s) 133
Eco24I GRGCYC 2 cut(s) 28, 984
Eco47I GGWCC 1 cut(s) 466
Eco47III AGCGCT 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 982
Eco88I CYCGRG 2 cut(s) 29, 562
EcoICRI GAGCTC 1 cut(s) 982
EcoO109I RGGNCCY 2 cut(s) 24, 25
EcoRII CCWGG 2 cut(s) 315, 462
EcoT38I GRGCYC 2 cut(s) 28, 984
Esp3I CGTCTC 1 cut(s) 1154
FaeI CATG 6 cut(s) 82, 169, 402, 556, 667, 1218
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 6 cut(s) 78, 165, 398, 552, 663, 1214
FauI CCCGC 2 cut(s) 257, 1082
FauNDI CATATG 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 502, 1071, 1219
FokI GGATG 1 cut(s) 1205
FriOI GRGCYC 2 cut(s) 28, 984
Fsp4HI GCNGC 3 cut(s) 502, 1071, 1219
FspBI CTAG 3 cut(s) 116, 275, 329
GlaI GCGC 2 cut(s) 273, 658
GluI GCNGC 3 cut(s) 502, 1071, 1219
GsaI CCCAGC 1 cut(s) 1077
GsuI CTGGAG 1 cut(s) 1085
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 6 cut(s) 26, 57, 65, 135, 315, 501
HapII CCGG 6 cut(s) 54, 62, 240, 481, 496, 1157
HgaI GACGC 1 cut(s) 521
HhaI GCGC 2 cut(s) 274, 659
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 6 cut(s) 82, 169, 402, 556, 667, 1218
Hin6I GCGC 2 cut(s) 272, 657
HinP1I GCGC 2 cut(s) 272, 657
HinfI GANTC 4 cut(s) 99, 231, 473, 681
HpaII CCGG 6 cut(s) 54, 62, 240, 481, 496, 1157
HphI GGTGA 6 cut(s) 43, 169, 181, 229, 531, 1033
Hpy166II GTNNAC 3 cut(s) 285, 326, 694
Hpy188I TCNGA 5 cut(s) 95, 470, 648, 686, 769
Hpy188III TCNNGA 7 cut(s) 166, 226, 418, 562, 899, 973, 1015
Hpy8I GTNNAC 3 cut(s) 285, 326, 694
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 82, 205, 232
HpyCH4IV ACGT 4 cut(s) 12, 266, 752, 992
HpyCH4V TGCA 2 cut(s) 611, 1218
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 484, 564, 947
HpyF3I CTNAG 1 cut(s) 848
HpySE526I ACGT 4 cut(s) 12, 266, 752, 992
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 6 cut(s) 82, 169, 402, 556, 667, 1218
HspAI GCGC 2 cut(s) 272, 657
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 90, 213, 598
LguI GCTCTTC 3 cut(s) 155, 989, 1194
LmnI GCTCC 2 cut(s) 720, 854
LweI GCATC 2 cut(s) 135, 1050
MaeI CTAG 3 cut(s) 116, 275, 329
MaeII ACGT 4 cut(s) 12, 266, 752, 992
MaeIII GTNAC 5 cut(s) 49, 235, 748, 787, 903
MalI GATC 3 cut(s) 92, 215, 600
MboI GATC 3 cut(s) 90, 213, 598
MboII GAAGA 5 cut(s) 67, 142, 521, 976, 1211
MflI RGATCY 2 cut(s) 213, 598
MhlI GDGCHC 3 cut(s) 28, 984, 1206
MlsI TGGCCA 1 cut(s) 315
MluCI AATT 3 cut(s) 121, 426, 801
MluNI TGGCCA 1 cut(s) 315
MlyI GAGTC 1 cut(s) 93
Mox20I TGGCCA 1 cut(s) 315
MroNI GCCGGC 1 cut(s) 61
MscI TGGCCA 1 cut(s) 315
MseI TTAA 1 cut(s) 888
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 315
MspI CCGG 6 cut(s) 54, 62, 240, 481, 496, 1157
MspR9I CCNGG 4 cut(s) 317, 464, 481, 497
Mva1269I GAATGC 1 cut(s) 864
MvaI CCWGG 2 cut(s) 317, 464
MvnI CGCG 1 cut(s) 659
MwoI GCNNNNNNNGC 4 cut(s) 249, 484, 564, 947
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 481, 497
NdeI CATATG 1 cut(s) 209
NdeII GATC 3 cut(s) 90, 213, 598
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 6 cut(s) 82, 169, 402, 556, 667, 1218
NlaIV GGNNCC 4 cut(s) 25, 26, 86, 500
NmeAIII GCCGAG 2 cut(s) 111, 986
NmuCI GTSAC 4 cut(s) 49, 235, 748, 787
NspI RCATGY 1 cut(s) 1218
PaeR7I CTCGAG 2 cut(s) 29, 562
PagI TCATGA 1 cut(s) 165
PciSI GCTCTTC 3 cut(s) 155, 989, 1194
PcsI WCGNNNNNNNCGW 3 cut(s) 569, 765, 1013
PctI GAATGC 1 cut(s) 864
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 231, 473, 681
PflMI CCANNNNNTGG 2 cut(s) 210, 463
PkrI GCNGC 3 cut(s) 503, 1072, 1220
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 984
Psp6I CCWGG 2 cut(s) 315, 462
PspFI CCCAGC 1 cut(s) 1073
PspGI CCWGG 2 cut(s) 315, 462
PspN4I GGNNCC 4 cut(s) 25, 26, 86, 500
PspOMI GGGCCC 1 cut(s) 24
PspPI GGNCC 4 cut(s) 24, 25, 466, 499
PspXI VCTCGAGB 1 cut(s) 29
PsuI RGATCY 2 cut(s) 213, 598
RsaI GTAC 3 cut(s) 327, 695, 1004
RsaNI GTAC 3 cut(s) 326, 694, 1003
RseI CAYNNNNRTG 1 cut(s) 551
SacI GAGCTC 1 cut(s) 984
SapI GCTCTTC 3 cut(s) 155, 989, 1194
SaqAI TTAA 1 cut(s) 888
SatI GCNGC 3 cut(s) 502, 1071, 1219
Sau3AI GATC 3 cut(s) 90, 213, 598
Sau96I GGNCC 4 cut(s) 24, 25, 466, 499
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 4 cut(s) 317, 464, 481, 497
SduI GDGCHC 3 cut(s) 28, 984, 1206
SfaNI GCATC 2 cut(s) 135, 1050
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 2 cut(s) 29, 562
SinI GGWCC 1 cut(s) 466
SlaI CTCGAG 2 cut(s) 29, 562
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 4 cut(s) 29, 226, 562, 742
SmoI CTYRAG 4 cut(s) 29, 226, 562, 742
Sse9I AATT 3 cut(s) 121, 426, 801
SsiI CCGC 7 cut(s) 250, 304, 502, 659, 1031, 1070, 1089
SspMI CTAG 3 cut(s) 116, 275, 329
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 4 cut(s) 315, 462, 479, 495
TaiI ACGT 4 cut(s) 15, 269, 755, 995
TaqI TCGA 4 cut(s) 30, 563, 576, 1016
TaqII GACCGA 1 cut(s) 34
TasI AATT 3 cut(s) 121, 426, 801
TatI WGTACW 2 cut(s) 325, 693
TauI GCSGC 2 cut(s) 504, 1073
TfiI GAWTC 3 cut(s) 231, 473, 681
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 4 cut(s) 49, 235, 748, 787
TseI GCWGC 1 cut(s) 1218
Tsp45I GTSAC 4 cut(s) 49, 235, 748, 787
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 882
TspRI CASTG 1 cut(s) 856
Van91I CCANNNNNTGG 2 cut(s) 210, 463
VpaK11BI GGWCC 1 cut(s) 466
XceI RCATGY 1 cut(s) 1218
XhoI CTCGAG 2 cut(s) 29, 562
XspI CTAG 3 cut(s) 116, 275, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.