Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009954.1

Orthogroup ID

OG0006798

Physical Location & Seq

Genomic Coordinates Reverse (-)

38773 .. 39039

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009954.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgggcgattcaaccccacttctctcggaatccaactcagccgagtcagaaccccctctgctacaaaaataccttccctccctcgactctaccatcgaactttgcatcggagatttcgggtgggcacagttcctccaagccaccctcgtctctttttcatggttcttcgacgcccagcaaaccttcatcaccgtcttcacagacgccgagcccaagagaaaaattattggtatgaggattttcttttcaaattttgttctcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0009705 GO:0009987 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0033554 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070417 GO:0071702 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

88

Amino Acids

9.95

Weight (kDa)

4.28

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16390
fragaria_vesca	FvH4_3g14010
malus_domestica	MD05G1238900.v1.1 MD10G1217000.v1.1
prunus_persica	Prupe.4G127100_v2.0.a1 Prupe.4G127200_v2.0.a1 Prupe.4G127300_v2.0.a1
pyrus_communis	pycom05g21490 pycom10g18300
rosa_chinensis	RchiOBHm_Chr5g0023241 RchiOBHm_Chr5g0023261 RchiOBHm_Chr5g0023301 RchiOBHm_Chr5g0023311
rosa_laevigata	RLG00000032713
rosa_multiflora	Rmu_sc0004693.1_g000003 Rmu_sc0009954.1_g000012 Rmu_sc0009954.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056020 Rroxscaffold_1G00056050
rosa_rugosa	Rorug05G0078300
rosa_samantha	Rh5BG164100 Rh5BG164200 Rh5CG179300 Rh5DG165800 Rh5DG165900
rosa_wichuraiana	Rw5G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	250
AcyI	GRCGYC	2 cut(s)	171, 204
AgsI	TTSAA	2 cut(s)	12, 249
Alw26I	GTCTC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	187
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	187
BsaHI	GRCGYC	2 cut(s)	171, 204
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 117, 147
BseMII	CTCAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	127
BseYI	CCCAGC	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	127, 213
BspCNI	CTCAG	1 cut(s)	50
BssNI	GRCGYC	2 cut(s)	171, 204
Bst4CI	ACNGT	2 cut(s)	129, 193
BstACI	GRCGYC	2 cut(s)	171, 204
BstDEI	CTNAG	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	187
CseI	GACGC	2 cut(s)	179, 212
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	3 cut(s)	41, 140, 211
CviKI_1	RGCY	3 cut(s)	41, 140, 211
DdeI	CTNAG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	162
FaiI	YATR	2 cut(s)	160, 233
FatI	CATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	178
HgaI	GACGC	2 cut(s)	179, 212
Hin1I	GRCGYC	2 cut(s)	171, 204
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	4 cut(s)	8, 29, 44, 86
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	28, 49, 110
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	83, 193
HpyCH4III	ACNGT	2 cut(s)	129, 193
HpyCH4V	TGCA	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	37
Hsp92I	GRCGYC	2 cut(s)	171, 204
Hsp92II	CATG	1 cut(s)	162
LpnPI	CCDG	1 cut(s)	188
LweI	GCATC	1 cut(s)	114
MboII	GAAGA	2 cut(s)	157, 187
MhlI	GDGCHC	2 cut(s)	127, 213
MluCI	AATT	3 cut(s)	222, 250, 262
MlyI	GAGTC	2 cut(s)	53, 80
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	66, 88, 92, 143, 155, 228
MseI	TTAA	1 cut(s)	265
NlaIII	CATG	1 cut(s)	162
NmeAIII	GCCGAG	2 cut(s)	67, 232
PfeI	GAWTC	2 cut(s)	8, 29
PleI	GAGTC	2 cut(s)	52, 80
PpsI	GAGTC	2 cut(s)	52, 80
PspFI	CCCAGC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	265
SchI	GAGTC	2 cut(s)	53, 80
SduI	GDGCHC	2 cut(s)	127, 213
SetI	ASST	2 cut(s)	75, 185
SfaNI	GCATC	1 cut(s)	114
Sse9I	AATT	3 cut(s)	222, 250, 262
TaaI	ACNGT	2 cut(s)	129, 193
TaqI	TCGA	3 cut(s)	84, 96, 168
TasI	AATT	3 cut(s)	222, 250, 262
TfiI	GAWTC	2 cut(s)	8, 29
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	147, 175
XapI	RAATTY	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.