Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006798

Physical Location & Seq

Genomic Coordinates Reverse (-)

17166828 .. 17167238

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGCGATTCAACCCCTCTTCTCTCCGAATCCAACTCAGCCGAGTCAGAACCCCCTCTGCTACAAAAACACCTTCCCTCCCTCGACTCCGCCATCGAACTTTGCATCGGAGATTTCGGGTGGGCACAGTTCCTCCAAGCCATCCTCGTCTCTTTTGCGTGGTTCTTCGACGCCCAGCAAACCTTCATCACCGTCTTCACAGAAGCCGAGCCCGCGTGGCACTGCACTCAACAGCTCACTGACATCCCGAGCTCATGCAACTCATCATTCTCAAACATTTGCCAACTTCCCGAGTCCAAATGGGACTGGGATCGTCCCAAACACACCTCTGTAATCTCCGAATGGGCCCTCCAGTGTTCCGGGTCGGTCATCGCCGGGCTGCCGGCCTCCTCCTTCTTCATGGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0009705 GO:0009987 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0033554 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070417 GO:0071702 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

136

Amino Acids

14.96

Weight (kDa)

4.22

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16390
fragaria_vesca	FvH4_3g14010
malus_domestica	MD05G1238900.v1.1 MD10G1217000.v1.1
prunus_persica	Prupe.4G127100_v2.0.a1 Prupe.4G127200_v2.0.a1 Prupe.4G127300_v2.0.a1
pyrus_communis	pycom05g21490 pycom10g18300
rosa_chinensis	RchiOBHm_Chr5g0023241 RchiOBHm_Chr5g0023261 RchiOBHm_Chr5g0023301 RchiOBHm_Chr5g0023311
rosa_laevigata	RLG00000032713
rosa_multiflora	Rmu_sc0004693.1_g000003 Rmu_sc0009954.1_g000012 Rmu_sc0009954.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056020 Rroxscaffold_1G00056050
rosa_rugosa	Rorug05G0078300
rosa_samantha	Rh5BG164100 Rh5BG164200 Rh5CG179300 Rh5DG165800 Rh5DG165900
rosa_wichuraiana	Rw5G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	90, 213
AclWI	GGATC	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	12
AluBI	AGCT	2 cut(s)	235, 252
AluI	AGCT	2 cut(s)	235, 252
Alw21I	GWGCWC	1 cut(s)	254
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	2 cut(s)	247, 290
AoxI	GGCC	2 cut(s)	345, 384
ApaI	GGGCCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	345, 346
AsuC2I	CCSGG	2 cut(s)	361, 376
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	2 cut(s)	247, 290
BaeGI	GKGCMC	2 cut(s)	127, 349
BanII	GRGCYC	3 cut(s)	213, 254, 349
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	2 cut(s)	101, 149
BcnI	CCSGG	2 cut(s)	361, 376
BcoDI	GTCTC	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
Bme1390I	CCNGG	2 cut(s)	361, 376
BmeT110I	CYCGRG	2 cut(s)	247, 290
BmgT120I	GGNCC	2 cut(s)	345, 346
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	361, 376
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	335
BpuMI	CCSGG	2 cut(s)	361, 376
BsaHI	GRCGYC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 117, 147
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	311, 352
BseGI	GGATG	2 cut(s)	141, 243
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	311, 352
BseRI	GAGGAG	1 cut(s)	379
BseSI	GKGCMC	2 cut(s)	127, 349
BseXI	GCAGC	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	347, 386
BsiHKAI	GWGCWC	1 cut(s)	254
BsiHKCI	CYCGRG	2 cut(s)	247, 290
BsiSI	CCGG	3 cut(s)	360, 375, 383
BslFI	GGGAC	2 cut(s)	300, 317
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	300, 317
BsnI	GGCC	2 cut(s)	347, 386
BsoBI	CYCGRG	2 cut(s)	247, 290
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	4 cut(s)	127, 213, 254, 349
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	90, 213
BspANI	GGCC	2 cut(s)	347, 386
BspCNI	CTCAG	1 cut(s)	50
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	311, 352
BssAI	RCCGGY	1 cut(s)	382
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	129, 193
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	213, 384
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	141, 243
BstFNI	CGCG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 217
BstSCI	CCNGG	2 cut(s)	359, 374
BstSLI	GKGCMC	2 cut(s)	127, 349
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	347, 386
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	141, 243
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	3 cut(s)	220, 237, 359
Cac8I	GCNNGC	2 cut(s)	213, 384
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	345, 346
CseI	GACGC	1 cut(s)	179
CviAII	CATG	2 cut(s)	255, 400
CviJI	RGCY	9 cut(s)	41, 140, 206, 211, 235, 252, 347, 379, 386
CviKI_1	RGCY	9 cut(s)	41, 140, 206, 211, 235, 252, 347, 379, 386
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	213, 254, 349
Eco53kI	GAGCTC	1 cut(s)	252
Eco88I	CYCGRG	2 cut(s)	247, 290
EcoICRI	GAGCTC	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	346
EcoT38I	GRGCYC	3 cut(s)	213, 254, 349
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	258, 403
FaiI	YATR	2 cut(s)	256, 401
FaqI	GGGAC	2 cut(s)	300, 317
FatI	CATG	2 cut(s)	254, 399
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	2 cut(s)	128, 230
FriOI	GRGCYC	3 cut(s)	213, 254, 349
Fsp4HI	GCNGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	380
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	347, 386
HapII	CCGG	3 cut(s)	360, 375, 383
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	258, 403
HinfI	GANTC	5 cut(s)	8, 29, 44, 86, 293
HpaII	CCGG	3 cut(s)	360, 375, 383
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	28, 49, 110, 340
Hpy188III	TCNNGA	2 cut(s)	247, 290
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	83, 193, 403
HpyCH4III	ACNGT	2 cut(s)	129, 193
HpyCH4V	TGCA	3 cut(s)	105, 225, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 217
HpyF3I	CTNAG	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	258, 403
KroI	GCCGGC	1 cut(s)	382
KroNI	GCCGGC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	6 cut(s)	188, 292, 365, 373, 388, 396
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	114
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	4 cut(s)	11, 157, 187, 388
MhlI	GDGCHC	4 cut(s)	127, 213, 254, 349
MlyI	GAGTC	3 cut(s)	53, 80, 302
MmeI	TCCRAC	1 cut(s)	57
MroNI	GCCGGC	1 cut(s)	382
MspI	CCGG	3 cut(s)	360, 375, 383
MspR9I	CCNGG	2 cut(s)	361, 376
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	212, 217
NaeI	GCCGGC	1 cut(s)	384
NciI	CCSGG	2 cut(s)	361, 376
NdeII	GATC	1 cut(s)	310
NgoMIV	GCCGGC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	258, 403
NlaIV	GGNNCC	1 cut(s)	347
NmeAIII	GCCGAG	2 cut(s)	67, 232
PdiI	GCCGGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	8, 29
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	3 cut(s)	52, 80, 301
PpsI	GAGTC	3 cut(s)	52, 80, 301
Psp124BI	GAGCTC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	347
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	345, 346
SacI	GAGCTC	1 cut(s)	254
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	345, 346
SchI	GAGTC	3 cut(s)	53, 80, 302
ScrFI	CCNGG	2 cut(s)	361, 376
SduI	GDGCHC	4 cut(s)	127, 213, 254, 349
SetI	ASST	5 cut(s)	75, 185, 237, 254, 329
SfaNI	GCATC	1 cut(s)	114
SsiI	CCGC	2 cut(s)	90, 213
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	2 cut(s)	359, 374
TaaI	ACNGT	2 cut(s)	129, 193
TaqI	TCGA	3 cut(s)	84, 96, 168
TaqII	GACCGA	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	8, 29
TscAI	CASTG	3 cut(s)	227, 244, 359
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	175, 388
TspRI	CASTG	3 cut(s)	227, 244, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.