Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006798

Physical Location & Seq

Genomic Coordinates Reverse (-)

17263274 .. 17263651

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGCGATTCAACCCCTCTTCTCTCCGAATCCAACTCAGCCGAGTCAGAACCCCCTCTGCTACAAAAACACCTTCCCTCCCTCGACTCCACCATCGAACTTTGCATCGGAGATTTCGGGTGGGCACAATTCCTCCAAACCATCCTCGTCTCTTTTTCAAAGTTCTTCGACGCCCAGCAAACTTTCATCACCGTCTTCGCAGATGCCGAGCCCGCGTGGCACTGTACTCAACAGCTCACTGACAACCCCAGCTCATGCAACTCATCATTCTCAAACAGTCCTCATGGGACTGGGATCGGCCCAAACACACCTCTCACTACAAGAAAAGTAATCATTTACGACGCGAGATTTACGGCGTGCATTAAATGCGCGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0009705 GO:0009987 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0033554 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070417 GO:0071702 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

125

Amino Acids

13.6

Weight (kDa)

4.7

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16390
fragaria_vesca	FvH4_3g14010
malus_domestica	MD05G1238900.v1.1 MD10G1217000.v1.1
prunus_persica	Prupe.4G127100_v2.0.a1 Prupe.4G127200_v2.0.a1 Prupe.4G127300_v2.0.a1
pyrus_communis	pycom05g21490 pycom10g18300
rosa_chinensis	RchiOBHm_Chr5g0023241 RchiOBHm_Chr5g0023261 RchiOBHm_Chr5g0023301 RchiOBHm_Chr5g0023311
rosa_laevigata	RLG00000032713
rosa_multiflora	Rmu_sc0004693.1_g000003 Rmu_sc0009954.1_g000012 Rmu_sc0009954.1_g000013
rosa_roxburghii	Rroxscaffold_1G00056020 Rroxscaffold_1G00056050
rosa_rugosa	Rorug05G0078300
rosa_samantha	Rh5BG164100 Rh5BG164200 Rh5CG179300 Rh5DG165800 Rh5DG165900
rosa_wichuraiana	Rw5G014860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	215, 344, 371
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	12, 159
AluBI	AGCT	2 cut(s)	235, 252
AluI	AGCT	2 cut(s)	235, 252
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	298
AspLEI	GCGC	2 cut(s)	371, 373
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	187
BccI	CCATC	2 cut(s)	101, 149
BceAI	ACGGC	2 cut(s)	358, 369
BcoDI	GTCTC	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	114, 193
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 117, 147
Bse1I	ACTGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	295
BsePI	GCGCGC	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	127
BseYI	CCCAGC	2 cut(s)	174, 248
Bsh1236I	CGCG	3 cut(s)	215, 344, 371
BshFI	GGCC	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	127, 213
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	50
BspFNI	CGCG	3 cut(s)	215, 344, 371
BspPI	GGATC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	295
BssHII	GCGCGC	1 cut(s)	369
BssMI	GATC	1 cut(s)	294
BssNI	GRCGYC	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	193, 224, 278
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	213, 358, 371
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	3 cut(s)	215, 344, 371
BstHHI	GCGC	2 cut(s)	371, 373
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 217, 366
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	3 cut(s)	215, 344, 371
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	220, 237
Cac8I	GCNNGC	3 cut(s)	213, 358, 371
CfoI	GCGC	2 cut(s)	371, 373
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	2 cut(s)	179, 350
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	2 cut(s)	255, 284
CviJI	RGCY	5 cut(s)	41, 211, 235, 252, 300
CviKI_1	RGCY	5 cut(s)	41, 211, 235, 252, 300
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	2 cut(s)	258, 287
FaiI	YATR	2 cut(s)	256, 285
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	2 cut(s)	254, 283
FauI	CCCGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	213
GlaI	GCGC	2 cut(s)	370, 372
GsaI	CCCAGC	2 cut(s)	178, 252
HaeIII	GGCC	1 cut(s)	300
HgaI	GACGC	2 cut(s)	179, 350
HhaI	GCGC	2 cut(s)	371, 373
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	258, 287
Hin6I	GCGC	2 cut(s)	369, 371
HinP1I	GCGC	2 cut(s)	369, 371
HinfI	GANTC	4 cut(s)	8, 29, 44, 86
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	28, 49, 110
Hpy99I	CGWCG	2 cut(s)	173, 344
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	3 cut(s)	193, 224, 278
HpyCH4V	TGCA	3 cut(s)	105, 258, 360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 217, 366
HpyF3I	CTNAG	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	258, 287
HspAI	GCGC	2 cut(s)	369, 371
Kzo9I	GATC	1 cut(s)	294
LpnPI	CCDG	3 cut(s)	188, 262, 276
LweI	GCATC	2 cut(s)	114, 193
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	3 cut(s)	11, 157, 187
MhlI	GDGCHC	2 cut(s)	127, 213
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	53, 80
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	8 cut(s)	27, 66, 88, 92, 143, 155, 291, 321
MseI	TTAA	1 cut(s)	363
MvnI	CGCG	3 cut(s)	215, 344, 371
MwoI	GCNNNNNNNGC	3 cut(s)	212, 217, 366
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	2 cut(s)	258, 287
NmeAIII	GCCGAG	2 cut(s)	67, 232
PauI	GCGCGC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	8, 29
PleI	GAGTC	2 cut(s)	52, 80
PpsI	GAGTC	2 cut(s)	52, 80
PspFI	CCCAGC	2 cut(s)	174, 248
PspPI	GGNCC	1 cut(s)	299
PteI	GCGCGC	1 cut(s)	369
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	53, 80
SduI	GDGCHC	2 cut(s)	127, 213
SetI	ASST	4 cut(s)	75, 237, 254, 313
SfaNI	GCATC	2 cut(s)	114, 193
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	193, 224, 278
TaqI	TCGA	3 cut(s)	84, 96, 168
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	8, 29
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	2 cut(s)	227, 244
TspDTI	ATGAA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	227, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.