Prupe.4G147500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
8432565 .. 8434444
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G147500.1

Sequence Viewer

Length: 360 bp
ATGGGTTGTGAACTCCCCTGCTCAAAGCCAGAGTTGGGATTTCACATGTCAAGCTCTGCATCTTCTTCTTCCAATCTTCCATGCTTTTCTGCTCAAGGTTCTTTTTCTCTAGCTTCCCAATTTTCACTTTTTCTAGCAATGGAAGGAATGGTTAAGTTCCAAACAGAGAGAGTGAATACAGAAGTTGCTGTATCACAGTTCATCTCAGTGAGAATGAGCAAACGCCCATTGACAAAAATGTTGGATACAATTATGGAGGAAGAATATGATTTTGGGGTTGATCAAACCTTGCGGTCCCCAATCTACAAATCATCTTCCTGCCATCTCACCCAGGATTACAGAGCTGGTCAATCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.19

Weight (kDa)

5.61

Isoelectric Point (pI)

67.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14395
prunus_persica Prupe.4G147500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0027421
rosa_roxburghii Rroxscaffold_1G00052100
rosa_samantha Rh5BG190800 Rh5CG211200 Rh5DG192500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 45
AjnI CCWGG 1 cut(s) 330
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 3 cut(s) 54, 113, 344
AluI AGCT 3 cut(s) 54, 113, 344
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 294
BccI CCATC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 332
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 1 cut(s) 280
BfaI CTAG 2 cut(s) 110, 134
BfuI GTATCC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 330
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 205
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 330
BsuI GTATCC 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 294
CviAII CATG 2 cut(s) 46, 81
CviJI RGCY 4 cut(s) 28, 54, 113, 344
CviKI_1 RGCY 4 cut(s) 28, 54, 113, 344
DdeI CTNAG 1 cut(s) 205
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 49, 84
FaiI YATR 4 cut(s) 47, 82, 254, 267
FaqI GGGAC 1 cut(s) 280
FatI CATG 2 cut(s) 45, 80
FbaI TGATCA 1 cut(s) 280
FspBI CTAG 2 cut(s) 110, 134
Hin1II CATG 2 cut(s) 49, 84
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 205
Hsp92II CATG 2 cut(s) 49, 84
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 6 cut(s) 31, 42, 317, 330, 331, 344
LweI GCATC 1 cut(s) 68
MaeI CTAG 2 cut(s) 110, 134
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 6 cut(s) 54, 57, 60, 68, 272, 306
MluCI AATT 2 cut(s) 119, 249
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 1 cut(s) 250
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
NdeII GATC 1 cut(s) 280
NlaIII CATG 2 cut(s) 49, 84
NlaIV GGNNCC 1 cut(s) 296
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PscI ACATGT 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 332
SetI ASST 5 cut(s) 56, 100, 115, 290, 346
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 2 cut(s) 119, 249
SsiI CCGC 1 cut(s) 292
SspMI CTAG 2 cut(s) 110, 134
StyD4I CCNGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 198
TasI AATT 2 cut(s) 119, 249
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 294
XceI RCATGY 1 cut(s) 49
XspI CTAG 2 cut(s) 110, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.