Rh5CG211200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019612
Physical Location & Seq
Forward (+)
21431531 .. 21432339
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG211200.1

Sequence Viewer

Length: 357 bp
ATGAAAATGACTGAACGTGCCGACCGAATGAAAGATACAGCCAATTTCAGTCCAAGTCACCCTATAAGAAGGTGCCCATTATCGTTCCCGGTTCTCCATCTTCCTCTTTCAATCTTCCCAGAACTCTTCCCCAGTTTCTCTAGCCTATCTGTAATGGAGGAAAGAGTCAGTACTGAAGTAGCTGTCCCACAGATGATTTCAGTGCGGAAGCGCCAACAGACCAAAATGTTGGATACAATTTTTGAGGAAGAGTACTACGATCTGGAGTTGATCAAACCTTGCTGCCGACAATTTACAGATCAACTTCTAGTTATGATCTTGACATATCATGTTATGGTAAGAAGCAGCTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.87

Weight (kDa)

6.82

Isoelectric Point (pI)

67.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14395
prunus_persica Prupe.4G147500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0027421
rosa_roxburghii Rroxscaffold_1G00052100
rosa_samantha Rh5BG190800 Rh5CG211200 Rh5DG192500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AciI CCGC 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 2 cut(s) 172, 254
AgsI TTSAA 1 cut(s) 111
AluBI AGCT 2 cut(s) 182, 348
AluI AGCT 2 cut(s) 182, 348
ApeKI GCWGC 2 cut(s) 282, 345
AspLEI GCGC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 105
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 2 cut(s) 141, 308
BfoI RGCGCY 1 cut(s) 214
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 2 cut(s) 283, 346
BlsI GCNGC 2 cut(s) 284, 347
BmcAI AGTACT 2 cut(s) 172, 254
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 269
Bsh1285I CGRYCG 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 259, 270, 298, 315
BspACI CCGC 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 132
BssMI GATC 4 cut(s) 259, 270, 298, 315
Bst6I CTCTTC 2 cut(s) 131, 243
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 4 cut(s) 262, 273, 301, 318
BstMBI GATC 4 cut(s) 259, 270, 298, 315
BstMCI CGRYCG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 171, 253
CviAII CATG 1 cut(s) 329
CviJI RGCY 4 cut(s) 41, 144, 182, 348
CviKI_1 RGCY 4 cut(s) 41, 144, 182, 348
CviQI GTAC 2 cut(s) 171, 253
DpnI GATC 4 cut(s) 261, 272, 300, 317
DpnII GATC 4 cut(s) 259, 270, 298, 315
Eam1104I CTCTTC 2 cut(s) 131, 243
EarI CTCTTC 2 cut(s) 131, 243
Eco57I CTGAAG 1 cut(s) 195
FaeI CATG 1 cut(s) 332
FaiI YATR 6 cut(s) 65, 314, 325, 330, 335, 352
FaqI GGGAC 1 cut(s) 170
FatI CATG 1 cut(s) 328
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 283, 346
Fsp4HI GCNGC 2 cut(s) 283, 346
FspBI CTAG 2 cut(s) 141, 308
GlaI GCGC 1 cut(s) 212
GluI GCNGC 2 cut(s) 283, 346
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 214
HapII CCGG 1 cut(s) 89
HhaI GCGC 1 cut(s) 213
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 50
Hpy188III TCNNGA 2 cut(s) 263, 319
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 4 cut(s) 259, 270, 298, 315
LpnPI CCDG 4 cut(s) 102, 132, 145, 248
Lsp1109I GCAGC 1 cut(s) 269
MaeI CTAG 2 cut(s) 141, 308
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 56
MalI GATC 4 cut(s) 261, 272, 300, 317
MboI GATC 4 cut(s) 259, 270, 298, 315
MboII GAAGA 4 cut(s) 92, 106, 118, 260
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 3 cut(s) 43, 237, 290
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 3 cut(s) 114, 151, 238
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 89
NciI CCSGG 1 cut(s) 89
NdeII GATC 4 cut(s) 259, 270, 298, 315
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PkrI GCNGC 2 cut(s) 284, 347
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 74
RsaI GTAC 2 cut(s) 172, 254
RsaNI GTAC 2 cut(s) 171, 253
SatI GCNGC 2 cut(s) 283, 346
Sau3AI GATC 4 cut(s) 259, 270, 298, 315
ScaI AGTACT 2 cut(s) 172, 254
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 77
SetI ASST 5 cut(s) 19, 74, 184, 280, 350
Sse9I AATT 3 cut(s) 43, 237, 290
SsiI CCGC 1 cut(s) 205
SspMI CTAG 2 cut(s) 141, 308
StyD4I CCNGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 19
TaqII GACCGA 1 cut(s) 39
TasI AATT 3 cut(s) 43, 237, 290
TatI WGTACW 2 cut(s) 170, 252
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 282, 345
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 44
TspRI CASTG 1 cut(s) 207
XspI CTAG 2 cut(s) 141, 308
ZrmI AGTACT 2 cut(s) 172, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.