RchiOBHm_Chr5g0027421

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
21392278 .. 21392620
343 bp
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UTR
Exon/CDS
Intron
PRQ30697

Sequence Viewer

Length: 204 bp
ATGGAGGAAAGAGTCAGTACTGAAGTAGCTGTCCCACAGATGATTTCAGTGCGGAAGCGCCAACAGACCAAAATGTTGGATACAATTTTTGAGGAAGAGTACTACGATCTGGAGTTGATCAAACCTTGCTGCCGACAATTTACAGATCAACTTCTAGTTATGATCTTGACATATCATGTTATGGTAAGAAGCAGCTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

8.05

Weight (kDa)

5.24

Isoelectric Point (pI)

66.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14395
prunus_persica Prupe.4G147500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0027421
rosa_roxburghii Rroxscaffold_1G00052100
rosa_samantha Rh5BG190800 Rh5CG211200 Rh5DG192500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 19, 101
AluBI AGCT 2 cut(s) 29, 195
AluI AGCT 2 cut(s) 29, 195
ApeKI GCWGC 2 cut(s) 129, 192
AspLEI GCGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 116
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 1 cut(s) 117
BfaI CTAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 61
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 2 cut(s) 130, 193
BlsI GCNGC 2 cut(s) 131, 194
BmcAI AGTACT 2 cut(s) 19, 101
BpmI CTGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 17
BsmFI GGGAC 1 cut(s) 17
Bsp143I GATC 4 cut(s) 106, 117, 145, 162
BspACI CCGC 1 cut(s) 52
BssMI GATC 4 cut(s) 106, 117, 145, 162
Bst6I CTCTTC 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 4 cut(s) 109, 120, 148, 165
BstMBI GATC 4 cut(s) 106, 117, 145, 162
BstV1I GCAGC 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 54
CfoI GCGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 18, 100
CviAII CATG 1 cut(s) 176
CviJI RGCY 2 cut(s) 29, 195
CviKI_1 RGCY 2 cut(s) 29, 195
CviQI GTAC 2 cut(s) 18, 100
DpnI GATC 4 cut(s) 108, 119, 147, 164
DpnII GATC 4 cut(s) 106, 117, 145, 162
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 42
FaeI CATG 1 cut(s) 179
FaiI YATR 5 cut(s) 161, 172, 177, 182, 199
FaqI GGGAC 1 cut(s) 17
FatI CATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 130, 193
Fsp4HI GCNGC 2 cut(s) 130, 193
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 130, 193
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 61
HhaI GCGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 110, 166
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 4 cut(s) 106, 117, 145, 162
LpnPI CCDG 1 cut(s) 95
Lsp1109I GCAGC 1 cut(s) 116
MaeI CTAG 1 cut(s) 155
MalI GATC 4 cut(s) 108, 119, 147, 164
MboI GATC 4 cut(s) 106, 117, 145, 162
MboII GAAGA 1 cut(s) 107
MluCI AATT 2 cut(s) 84, 137
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 1 cut(s) 85
NdeII GATC 4 cut(s) 106, 117, 145, 162
NlaIII CATG 1 cut(s) 179
PkrI GCNGC 2 cut(s) 131, 194
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
RsaI GTAC 2 cut(s) 19, 101
RsaNI GTAC 2 cut(s) 18, 100
SatI GCNGC 2 cut(s) 130, 193
Sau3AI GATC 4 cut(s) 106, 117, 145, 162
ScaI AGTACT 2 cut(s) 19, 101
SchI GAGTC 1 cut(s) 21
SetI ASST 3 cut(s) 31, 127, 197
SgeI CNNG 5 cut(s) 122, 138, 167, 178, 188
Sse9I AATT 2 cut(s) 84, 137
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 155
TasI AATT 2 cut(s) 84, 137
TatI WGTACW 2 cut(s) 17, 99
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 129, 192
TspRI CASTG 1 cut(s) 54
XspI CTAG 1 cut(s) 155
ZrmI AGTACT 2 cut(s) 19, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.