Rroxscaffold_1G00052100

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
72816073 .. 72816659
587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052100.1

Sequence Viewer

Length: 150 bp
ATGACTGAACGTGCCGACCGAATGAAAGCTACAGCCAATTTCAGTCTAGGTAACCCTATAAGAAGGTGCCCATTATCGTTCCCGGTTCTCCATCTTCCTCTTTCAATCTTCCATGTTTATCTTCCCAGTACTCTTCCTCAGTTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.6

Weight (kDa)

10.04

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14395
prunus_persica Prupe.4G147500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0027421
rosa_roxburghii Rroxscaffold_1G00052100
rosa_samantha Rh5BG190800 Rh5CG211200 Rh5DG192500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AfaI GTAC 1 cut(s) 130
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 66
BccI CCATC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 2 cut(s) 47, 148
BfmI CTRYAG 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 50
BstMCI CGRYCG 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 113
CviJI RGCY 2 cut(s) 29, 35
CviKI_1 RGCY 2 cut(s) 29, 35
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 59, 114
FatI CATG 1 cut(s) 112
FspBI CTAG 2 cut(s) 47, 148
HapII CCGG 1 cut(s) 83
Hin1II CATG 1 cut(s) 116
HpaII CCGG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 1 cut(s) 116
LpnPI CCDG 2 cut(s) 96, 139
MaeI CTAG 2 cut(s) 47, 148
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 4 cut(s) 86, 100, 113, 125
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 1 cut(s) 37
MnlI CCTC 2 cut(s) 108, 147
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 83
NciI CCSGG 1 cut(s) 83
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PspEI GGTNACC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 68
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 71
SetI ASST 4 cut(s) 13, 31, 52, 68
SfcI CTRYAG 1 cut(s) 30
SgeI CNNG 6 cut(s) 23, 59, 94, 95, 125, 138
Sse9I AATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 47, 148
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 13
TaqII GACCGA 1 cut(s) 33
TasI AATT 1 cut(s) 37
TatI WGTACW 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 38
XspI CTAG 2 cut(s) 47, 148
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.