Prupe.4G185400_v2.0.a1

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014459
Physical Location & Seq
Forward (+)
11006408 .. 11008051
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G185400.1

Sequence Viewer

Length: 768 bp
ATGTTGGCTATTTTCCACAAGGCTTGTGCTCACCCACCAGAGGAGCTAAACAGTCCTGCTTCTCACAATGGAAGCAAGAAGCCTAAGCTCCCAGAAGAGACTCTCACGGAGTTCCTCAACCACCATCCTCACAACTCCTTCTCCATGGGCTTTGGCCGTGCTGCAGTGCTTGCTTATGTCAAGCCAGACCAACCCTTTTACTCCCAACACCAGAGGTTGTTCTGTGGTTTTGATGATATATACTGCCTGTTCTTGGGGAGCTTGAACAATCTGTGTTTGCTAAACAAGCAGTATGGTCTAACAAAAAATACCAATGAGGCCATGTTTGTGATTGAAGCTTATAGGACCCTTCGTGACAGGGGTCCCTACCCAGCTGATCAGGTTGTGAAGGATCTTGATGGAAGCTTTGCTTTTGTTGTCTATGACAGCAAGGGTGGAAATGTCTTTGCTGCACTGGGTTCTGATGGTGGAGTGCAGCTTTACTGGGGAATTGCAGCTGATGGATCTGTTGTAATTTCTGATGAATTAGAGGTCATAAAAGAGGGGTGTGCTAAATCATTTGCTCCCTTCCCAAAAGGATGCTTGTTTCATAGTGAGGGAGGATTGATGAGCTTTGAGCATCCAATGAACAAGATGAAGCCAATGCCAAGGATAGACAGTGAAGGGGCCATGTGTGGGGCCACCTTCAATGTAGATAAGTATACGAGGGTCAACAGCATTCCGAGGGTCGGAAGTGAAGCAAACTGGACTGAGTGGGCCTCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

256

Amino Acids

28.19

Weight (kDa)

6.05

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27450
fragaria_vesca FvH4_3g20560
malus_domestica MD03G1224100.v1.1 MD11G1241900.v1.1
prunus_persica Prupe.4G185400_v2.0.a1
pyrus_communis pycom03g17250 pycom11g21360
rosa_chinensis RchiOBHm_Chr5g0034571
rosa_laevigata RLG00000033555
rosa_multiflora Rmu_sc0003126.1_g000004
rosa_roxburghii Rroxscaffold_1G00045760
rosa_rugosa Rorug05G0146500
rosa_samantha Rh5AG238900 Rh5BG239400 Rh5CG269900
rosa_wichuraiana Rw5G021780 Rw5G021870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 701
AclWI GGATC 2 cut(s) 399, 511
AcoI YGGCCR 1 cut(s) 154
AfiI CCNNNNNNNGG 4 cut(s) 40, 253, 675, 728
AgsI TTSAA 3 cut(s) 265, 335, 688
AluBI AGCT 9 cut(s) 46, 88, 261, 338, 374, 405, 478, 497, 612
AluI AGCT 9 cut(s) 46, 88, 261, 338, 374, 405, 478, 497, 612
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 399, 511
AoxI GGCC 5 cut(s) 154, 318, 666, 678, 756
ApeKI GCWGC 4 cut(s) 161, 449, 475, 494
AspS9I GGNCC 5 cut(s) 345, 362, 666, 678, 756
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 2 cut(s) 345, 362
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 4 cut(s) 148, 436, 487, 506
BccI CCATC 4 cut(s) 132, 392, 458, 494
BceAI ACGGC 1 cut(s) 141
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 4 cut(s) 162, 450, 476, 495
BlsI GCNGC 4 cut(s) 163, 451, 477, 496
Bme18I GGWCC 2 cut(s) 345, 362
BmgT120I GGNCC 5 cut(s) 345, 362, 666, 678, 756
BmiI GGNNCC 5 cut(s) 347, 363, 364, 667, 679
BmrI ACTGGG 2 cut(s) 464, 493
BmsI GCATC 2 cut(s) 569, 628
BmuI ACTGGG 2 cut(s) 464, 493
BoxI GACNNNNGTC 1 cut(s) 360
BplI GAGNNNNNCTC 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 144, 647, 722
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 253, 675, 728
Bse1I ACTGG 3 cut(s) 459, 488, 749
BseDI CCNNGG 3 cut(s) 144, 647, 722
BseGI GGATG 3 cut(s) 124, 584, 619
BseLI CCNNNNNNNGG 4 cut(s) 40, 253, 675, 728
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 3 cut(s) 459, 488, 749
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 148, 436, 487, 506
BseYI CCCAGC 1 cut(s) 370
BsgI GTGCAG 2 cut(s) 435, 494
BshFI GGCC 5 cut(s) 156, 320, 668, 680, 758
BsiHKAI GWGCWC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 4 cut(s) 40, 253, 675, 728
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 5 cut(s) 156, 320, 668, 680, 758
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 376, 391, 503
Bsp19I CCATGG 1 cut(s) 144
BspANI GGCC 5 cut(s) 156, 320, 668, 680, 758
BspCNI CTCAG 1 cut(s) 742
BspLI GGNNCC 5 cut(s) 347, 363, 364, 667, 679
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 399, 511
BsrI ACTGG 3 cut(s) 459, 488, 749
BssECI CCNNGG 3 cut(s) 144, 647, 722
BssMI GATC 3 cut(s) 376, 391, 503
BssNAI GTATAC 1 cut(s) 702
BssT1I CCWWGG 2 cut(s) 144, 647
Bst1107I GTATAC 1 cut(s) 702
Bst4CI ACNGT 2 cut(s) 53, 659
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 84, 750
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 124, 584, 619
BstKTI GATC 3 cut(s) 379, 394, 506
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 376, 391, 503
BstMWI GCNNNNNNNGC 2 cut(s) 170, 286
BstPAI GACNNNNGTC 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 148, 436, 487, 506
BstX2I RGATCY 2 cut(s) 391, 503
BstYI RGATCY 2 cut(s) 391, 503
BstZ17I GTATAC 1 cut(s) 702
BsuRI GGCC 5 cut(s) 156, 320, 668, 680, 758
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 124, 584, 619
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 3 cut(s) 171, 452, 664
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 5 cut(s) 345, 362, 666, 678, 756
CspCI CAANNNNNGTGG 2 cut(s) 5, 40
CviAII CATG 3 cut(s) 145, 322, 670
DdeI CTNAG 2 cut(s) 84, 750
DpnI GATC 3 cut(s) 378, 393, 505
DpnII GATC 3 cut(s) 376, 391, 503
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 144, 647
Eco47I GGWCC 2 cut(s) 345, 362
EcoO109I RGGNCCY 2 cut(s) 345, 362
EcoT14I CCWWGG 2 cut(s) 144, 647
ErhI CCWWGG 2 cut(s) 144, 647
FaeI CATG 3 cut(s) 148, 325, 673
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 1 cut(s) 348
FatI CATG 3 cut(s) 144, 321, 669
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 4 cut(s) 162, 450, 476, 495
FokI GGATG 3 cut(s) 111, 591, 606
Fsp4HI GCNGC 4 cut(s) 162, 450, 476, 495
GluI GCNGC 4 cut(s) 162, 450, 476, 495
GsaI CCCAGC 1 cut(s) 374
HaeIII GGCC 5 cut(s) 156, 320, 668, 680, 758
Hin1II CATG 3 cut(s) 148, 325, 673
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 2 cut(s) 336, 403
HinfI GANTC 1 cut(s) 100
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 702, 712
Hpy188I TCNGA 4 cut(s) 463, 520, 723, 731
Hpy188III TCNNGA 2 cut(s) 353, 395
Hpy8I GTNNAC 2 cut(s) 702, 712
HpyAV CCTTC 6 cut(s) 148, 359, 382, 577, 656, 694
HpyCH4III ACNGT 2 cut(s) 53, 659
HpyCH4V TGCA 4 cut(s) 164, 452, 475, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 286
HpyF3I CTNAG 2 cut(s) 84, 750
Hsp92II CATG 3 cut(s) 148, 325, 673
KflI GGGWCCC 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 3 cut(s) 376, 391, 503
LmnI GCTCC 4 cut(s) 43, 93, 258, 568
Lsp1109I GCAGC 4 cut(s) 148, 436, 487, 506
LweI GCATC 2 cut(s) 569, 628
MaeIII GTNAC 1 cut(s) 353
MalI GATC 3 cut(s) 378, 393, 505
MboI GATC 3 cut(s) 376, 391, 503
MboII GAAGA 1 cut(s) 107
MflI RGATCY 2 cut(s) 391, 503
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 3 cut(s) 489, 513, 524
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 709
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 2 cut(s) 374, 497
Mva1269I GAATGC 1 cut(s) 717
MwoI GCNNNNNNNGC 2 cut(s) 170, 286
NcoI CCATGG 1 cut(s) 144
NdeII GATC 3 cut(s) 376, 391, 503
NlaIII CATG 3 cut(s) 148, 325, 673
NlaIV GGNNCC 5 cut(s) 347, 363, 364, 667, 679
NmuCI GTSAC 1 cut(s) 353
PctI GAATGC 1 cut(s) 717
PkrI GCNGC 4 cut(s) 163, 451, 477, 496
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 2 cut(s) 345, 362
PshAI GACNNNNGTC 1 cut(s) 360
Psp5II RGGWCCY 2 cut(s) 345, 362
PspFI CCCAGC 1 cut(s) 370
PspN4I GGNNCC 5 cut(s) 347, 363, 364, 667, 679
PspPI GGNCC 5 cut(s) 345, 362, 666, 678, 756
PspPPI RGGWCCY 2 cut(s) 345, 362
PstI CTGCAG 1 cut(s) 166
PsuI RGATCY 2 cut(s) 391, 503
PvuII CAGCTG 2 cut(s) 374, 497
RseI CAYNNNNRTG 1 cut(s) 326
SatI GCNGC 4 cut(s) 162, 450, 476, 495
Sau3AI GATC 3 cut(s) 376, 391, 503
Sau96I GGNCC 5 cut(s) 345, 362, 666, 678, 756
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 31
SfaNI GCATC 2 cut(s) 569, 628
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 345, 362
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 3 cut(s) 489, 513, 524
StyI CCWWGG 2 cut(s) 144, 647
TaaI ACNGT 2 cut(s) 53, 659
TasI AATT 3 cut(s) 489, 513, 524
TscAI CASTG 3 cut(s) 171, 459, 664
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 4 cut(s) 161, 449, 475, 494
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 4 cut(s) 537, 578, 641, 650
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 3 cut(s) 171, 459, 664
VpaK11BI GGWCC 2 cut(s) 345, 362
XmiI GTMKAC 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.