Rorug05G0146500

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000152
Physical Location & Seq
Reverse (-)
13588353 .. 13591404
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0146500.1

Sequence Viewer

Length: 669 bp
ATGGGGCAGAAGTCGCTGATCTACGCGTTCGTGGCGCGAGGCACTGTGATTCTTGCCGAGTACACCGAATTCAGCGGCAATTTCAACTCCATAGCCTTCCAGTGCCTCCAGAAACTTCCGGCCACCAACAACAAGTTCACCTACAACTGCGACGGCCACACCTTCAATTACCTCGTCGACAATGGCTACACATACTGTGTGGTGGCAGATGAATCAGTTGGAAGACAAGTGCCTATTGCTTTTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGTGGTGGCAAGGCCGCTACAGCTGCTGCCAACAGTCTTAACAAGGAATTTGGGTCAAAATTGAAGGAACATATGCAATACTGTGTTGATCATCCTGAAGAAATAAGCAAGCTTGCTAAGGTTAAGGCCCAGGTTTCAGAAGTGAAAGGTGTTATGATGGAGAACATTGAAAAGGTTTTGGATAGAGGGGAAAAGATAGAGCTTTTGGTTGATAAGACTGAGACTCTTCATCATCAGGCACAGGACTTCCGTAACGTTGGGACTAAAATGAGAAGGAAGATGTGGCTGCAGAATATGAAGGTGAAGCTGATTGTTTTGGGAATTCTGATTGCATTGATCCTCATCATAATCCTCTCTGTTTGCCATGGTTTCAACTGCGGCGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

222

Amino Acids

24.83

Weight (kDa)

8.65

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 34 - 111 1e-23 Regulated-SNARE-like domain
Synaptobrevin PF00957 130 - 210 7.6e-29 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 2 cut(s) 26, 37
AciI CCGC 4 cut(s) 75, 294, 657, 660
AclI AACGTT 1 cut(s) 534
AclWI GGATC 1 cut(s) 610
AcoI YGGCCR 2 cut(s) 120, 154
AcsI RAATTY 3 cut(s) 68, 326, 600
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 5 cut(s) 85, 166, 343, 449, 652
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 302, 391, 481, 586
AluI AGCT 4 cut(s) 302, 391, 481, 586
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 610
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 4 cut(s) 120, 154, 291, 405
ApeKI GCWGC 3 cut(s) 302, 305, 565
ApoI RAATTY 3 cut(s) 68, 326, 600
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 130, 592
BbsI GAAGAC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 289, 292, 552
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 410
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 494
BfmI CTRYAG 2 cut(s) 297, 566
BisI GCNGC 6 cut(s) 76, 294, 303, 306, 566, 658
BlsI GCNGC 6 cut(s) 77, 295, 304, 307, 567, 659
Bme1390I CCNGG 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 229
BpmI CTGGAG 2 cut(s) 92, 266
Bpu10I CCTNAGC 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 408, 643
Bse1I ACTGG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 620
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 408, 643
BseGI GGATG 2 cut(s) 265, 370
BseJI GATNNNNATC 1 cut(s) 620
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 289, 292, 552
Bsh1236I CGCG 2 cut(s) 26, 37
BshFI GGCC 4 cut(s) 122, 156, 293, 407
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 553
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 553
BsnI GGCC 4 cut(s) 122, 156, 293, 407
Bsp143I GATC 3 cut(s) 18, 367, 615
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 4 cut(s) 75, 294, 657, 660
BspANI GGCC 4 cut(s) 122, 156, 293, 407
BspCNI CTCAG 1 cut(s) 490
BspFNI CGCG 2 cut(s) 26, 37
BspMAI CTGCAG 1 cut(s) 570
BspPI GGATC 1 cut(s) 610
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 408, 643
BssMI GATC 3 cut(s) 18, 367, 615
BssT1I CCWWGG 1 cut(s) 643
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 4 cut(s) 46, 197, 314, 362
Bst6I CTCTTC 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 389, 393
BstDEI CTNAG 2 cut(s) 396, 498
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 2 cut(s) 265, 370
BstFNI CGCG 2 cut(s) 26, 37
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 21, 370, 618
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 3 cut(s) 18, 367, 615
BstMWI GCNNNNNNNGC 4 cut(s) 13, 32, 299, 302
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 2 cut(s) 297, 566
BstUI CGCG 2 cut(s) 26, 37
BstV1I GCAGC 3 cut(s) 289, 292, 552
BstV2I GAAGAC 1 cut(s) 229
BsuRI GGCC 4 cut(s) 122, 156, 293, 407
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 2 cut(s) 265, 370
BtsIMutI CAGTG 2 cut(s) 42, 107
Cac8I GCNNGC 2 cut(s) 389, 393
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 644
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 396, 498
DpnI GATC 3 cut(s) 20, 369, 617
DpnII GATC 3 cut(s) 18, 367, 615
EaeI YGGCCR 2 cut(s) 120, 154
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 643
Eco57I CTGAAG 1 cut(s) 396
EcoRI GAATTC 2 cut(s) 68, 600
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 1 cut(s) 647
FaiI YATR 9 cut(s) 92, 193, 279, 351, 353, 434, 575, 626, 645
FaqI GGGAC 1 cut(s) 553
FatI CATG 1 cut(s) 643
FauNDI CATATG 1 cut(s) 351
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 6 cut(s) 76, 294, 303, 306, 566, 658
FokI GGATG 2 cut(s) 272, 357
Fsp4HI GCNGC 6 cut(s) 76, 294, 303, 306, 566, 658
GlaI GCGC 1 cut(s) 36
GluI GCNGC 6 cut(s) 76, 294, 303, 306, 566, 658
GsuI CTGGAG 2 cut(s) 92, 266
HaeIII GGCC 4 cut(s) 122, 156, 293, 407
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 647
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 49, 212, 502
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 130, 592
Hpy166II GTNNAC 3 cut(s) 63, 138, 178
Hpy188I TCNGA 2 cut(s) 418, 606
Hpy188III TCNNGA 3 cut(s) 109, 245, 374
Hpy8I GTNNAC 3 cut(s) 63, 138, 178
Hpy99I CGWCG 2 cut(s) 155, 179
HpyAV CCTTC 6 cut(s) 106, 172, 250, 337, 546, 571
HpyCH4III ACNGT 4 cut(s) 46, 197, 314, 362
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 3 cut(s) 355, 568, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 32, 299, 302
HpyF3I CTNAG 2 cut(s) 396, 498
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 1 cut(s) 647
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 3 cut(s) 18, 367, 615
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 113, 122, 132, 230, 387, 395, 422, 500, 506
Lsp1109I GCAGC 3 cut(s) 289, 292, 552
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 530
MalI GATC 3 cut(s) 20, 369, 617
MboI GATC 3 cut(s) 18, 367, 615
MboII GAAGA 4 cut(s) 234, 389, 497, 568
MluCI AATT 7 cut(s) 68, 79, 166, 326, 338, 600, 664
MluI ACGCGT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 32, 116, 182, 458, 629, 641
MseI TTAA 2 cut(s) 318, 402
MspA1I CMGCKG 2 cut(s) 75, 302
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 2 cut(s) 26, 37
MwoI GCNNNNNNNGC 4 cut(s) 13, 32, 299, 302
NcoI CCATGG 1 cut(s) 643
NdeI CATATG 1 cut(s) 351
NdeII GATC 3 cut(s) 18, 367, 615
NlaIII CATG 1 cut(s) 647
NmeAIII GCCGAG 1 cut(s) 82
PfeI GAWTC 2 cut(s) 49, 212
PkrI GCNGC 6 cut(s) 77, 295, 304, 307, 567, 659
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Psp1406I AACGTT 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 570
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 318, 402
SatI GCNGC 6 cut(s) 76, 294, 303, 306, 566, 658
Sau3AI GATC 3 cut(s) 18, 367, 615
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 410
SfcI CTRYAG 2 cut(s) 297, 566
Sse9I AATT 7 cut(s) 68, 79, 166, 326, 338, 600, 664
SsiI CCGC 4 cut(s) 75, 294, 657, 660
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 4 cut(s) 46, 197, 314, 362
TaiI ACGT 1 cut(s) 537
TaqI TCGA 1 cut(s) 177
TasI AATT 7 cut(s) 68, 79, 166, 326, 338, 600, 664
TatI WGTACW 1 cut(s) 60
TauI GCSGC 3 cut(s) 78, 296, 660
TfiI GAWTC 2 cut(s) 49, 212
Tru1I TTAA 2 cut(s) 318, 402
Tru9I TTAA 2 cut(s) 318, 402
TscAI CASTG 2 cut(s) 49, 107
TseI GCWGC 3 cut(s) 302, 305, 565
TspDTI ATGAA 3 cut(s) 225, 497, 590
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 2 cut(s) 49, 107
XapI RAATTY 3 cut(s) 68, 326, 600
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.