Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 86 - 146 | 3.5e-10 | Homeodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 62 |
| AarI | CACCTGC | 1 cut(s) | 607 |
| Acc36I | ACCTGC | 1 cut(s) | 607 |
| AccB1I | GGYRCC | 1 cut(s) | 725 |
| AciI | CCGC | 4 cut(s) | 783, 951, 957, 999 |
| AclWI | GGATC | 5 cut(s) | 346, 537, 673, 744, 757 |
| AfaI | GTAC | 3 cut(s) | 374, 511, 557 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 908, 981 |
| AgsI | TTSAA | 3 cut(s) | 151, 702, 884 |
| AjnI | CCWGG | 1 cut(s) | 873 |
| AluBI | AGCT | 4 cut(s) | 233, 364, 617, 710 |
| AluI | AGCT | 4 cut(s) | 233, 364, 617, 710 |
| Alw26I | GTCTC | 1 cut(s) | 361 |
| AlwI | GGATC | 5 cut(s) | 346, 537, 673, 744, 757 |
| Ama87I | CYCGRG | 1 cut(s) | 426 |
| ApeKI | GCWGC | 2 cut(s) | 436, 954 |
| AseI | ATTAAT | 1 cut(s) | 633 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 398, 449 |
| AspLEI | GCGC | 1 cut(s) | 1004 |
| AspS9I | GGNCC | 1 cut(s) | 324 |
| AsuHPI | GGTGA | 5 cut(s) | 132, 168, 785, 863, 923 |
| AvaI | CYCGRG | 1 cut(s) | 426 |
| AvaII | GGWCC | 1 cut(s) | 324 |
| AxyI | CCTNAGG | 1 cut(s) | 525 |
| BamHI | GGATCC | 1 cut(s) | 749 |
| BanI | GGYRCC | 1 cut(s) | 725 |
| BbsI | GAAGAC | 1 cut(s) | 391 |
| BbvI | GCAGC | 2 cut(s) | 448, 966 |
| BccI | CCATC | 5 cut(s) | 181, 255, 455, 637, 980 |
| BceAI | ACGGC | 2 cut(s) | 979, 1054 |
| BciT130I | CCWGG | 1 cut(s) | 875 |
| BclI | TGATCA | 1 cut(s) | 277 |
| BcoDI | GTCTC | 1 cut(s) | 361 |
| BfoI | RGCGCY | 1 cut(s) | 1005 |
| BfuAI | ACCTGC | 1 cut(s) | 607 |
| BisI | GCNGC | 6 cut(s) | 437, 784, 952, 955, 958, 1000 |
| BlsI | GCNGC | 6 cut(s) | 438, 785, 953, 956, 959, 1001 |
| BmcAI | AGTACT | 1 cut(s) | 557 |
| Bme1390I | CCNGG | 1 cut(s) | 875 |
| Bme18I | GGWCC | 1 cut(s) | 324 |
| BmeT110I | CYCGRG | 1 cut(s) | 426 |
| BmgT120I | GGNCC | 1 cut(s) | 324 |
| BmiI | GGNNCC | 5 cut(s) | 186, 326, 410, 727, 751 |
| BmrFI | CCNGG | 1 cut(s) | 875 |
| BpiI | GAAGAC | 1 cut(s) | 391 |
| BpmI | CTGGAG | 2 cut(s) | 84, 732 |
| BsaJI | CCNNGG | 1 cut(s) | 945 |
| BsaWI | WCCGGW | 1 cut(s) | 974 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 542, 572 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 908, 981 |
| Bse1I | ACTGG | 3 cut(s) | 101, 410, 727 |
| Bse21I | CCTNAGG | 1 cut(s) | 525 |
| BseBI | CCWGG | 1 cut(s) | 875 |
| BseDI | CCNNGG | 1 cut(s) | 945 |
| BseGI | GGATG | 3 cut(s) | 466, 809, 991 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 908, 981 |
| BseMII | CTCAG | 6 cut(s) | 181, 198, 356, 516, 720, 1036 |
| BseNI | ACTGG | 3 cut(s) | 101, 410, 727 |
| BseRI | GAGGAG | 1 cut(s) | 796 |
| BseXI | GCAGC | 2 cut(s) | 448, 966 |
| BseYI | CCCAGC | 2 cut(s) | 233, 981 |
| BsgI | GTGCAG | 1 cut(s) | 579 |
| BshNI | GGYRCC | 1 cut(s) | 725 |
| BsiHKCI | CYCGRG | 1 cut(s) | 426 |
| BsiSI | CCGG | 1 cut(s) | 975 |
| BslFI | GGGAC | 1 cut(s) | 310 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 908, 981 |
| BsmAI | GTCTC | 1 cut(s) | 361 |
| BsmFI | GGGAC | 1 cut(s) | 310 |
| BsoBI | CYCGRG | 1 cut(s) | 426 |
| Bsp143I | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| BspACI | CCGC | 4 cut(s) | 783, 951, 957, 999 |
| BspCNI | CTCAG | 6 cut(s) | 180, 199, 357, 517, 719, 1035 |
| BspLI | GGNNCC | 5 cut(s) | 186, 326, 410, 727, 751 |
| BspMI | ACCTGC | 1 cut(s) | 607 |
| BspPI | GGATC | 5 cut(s) | 346, 537, 673, 744, 757 |
| BspT107I | GGYRCC | 1 cut(s) | 725 |
| BsrI | ACTGG | 3 cut(s) | 101, 410, 727 |
| BssECI | CCNNGG | 1 cut(s) | 945 |
| BssMI | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| Bst2UI | CCWGG | 1 cut(s) | 875 |
| Bst4CI | ACNGT | 3 cut(s) | 372, 897, 911 |
| Bst6I | CTCTTC | 3 cut(s) | 23, 152, 946 |
| BstC8I | GCNNGC | 2 cut(s) | 245, 1006 |
| BstDEI | CTNAG | 6 cut(s) | 167, 207, 365, 525, 706, 1022 |
| BstF5I | GGATG | 3 cut(s) | 466, 809, 991 |
| BstH2I | RGCGCY | 1 cut(s) | 1005 |
| BstHHI | GCGC | 1 cut(s) | 1004 |
| BstKTI | GATC | 9 cut(s) | 280, 301, 354, 384, 532, 668, 752, 868, 1021 |
| BstMAI | GTCTC | 1 cut(s) | 361 |
| BstMBI | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 614, 957, 963, 987, 996, 1005 |
| BstNI | CCWGG | 1 cut(s) | 875 |
| BstNSI | RCATGY | 2 cut(s) | 41, 679 |
| BstSCI | CCNGG | 1 cut(s) | 873 |
| BstV1I | GCAGC | 2 cut(s) | 448, 966 |
| BstV2I | GAAGAC | 1 cut(s) | 391 |
| BstX2I | RGATCY | 2 cut(s) | 665, 749 |
| BstYI | RGATCY | 2 cut(s) | 665, 749 |
| Bsu36I | CCTNAGG | 1 cut(s) | 525 |
| BtsCI | GGATG | 3 cut(s) | 466, 809, 991 |
| BtsI | GCAGTG | 2 cut(s) | 729, 793 |
| BtsIMutI | CAGTG | 3 cut(s) | 729, 793, 893 |
| BveI | ACCTGC | 1 cut(s) | 607 |
| Cac8I | GCNNGC | 2 cut(s) | 245, 1006 |
| CfoI | GCGC | 1 cut(s) | 1004 |
| Cfr13I | GGNCC | 1 cut(s) | 324 |
| Csp6I | GTAC | 3 cut(s) | 373, 510, 556 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 718, 753 |
| CviAII | CATG | 8 cut(s) | 38, 467, 475, 544, 676, 832, 850, 904 |
| CviQI | GTAC | 3 cut(s) | 373, 510, 556 |
| DdeI | CTNAG | 6 cut(s) | 167, 207, 365, 525, 706, 1022 |
| DpnI | GATC | 9 cut(s) | 279, 300, 353, 383, 531, 667, 751, 867, 1020 |
| DpnII | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| Eam1104I | CTCTTC | 3 cut(s) | 23, 152, 946 |
| EarI | CTCTTC | 3 cut(s) | 23, 152, 946 |
| Eco47I | GGWCC | 1 cut(s) | 324 |
| Eco81I | CCTNAGG | 1 cut(s) | 525 |
| Eco88I | CYCGRG | 1 cut(s) | 426 |
| EcoO109I | RGGNCCY | 1 cut(s) | 324 |
| EcoRII | CCWGG | 1 cut(s) | 873 |
| FaeI | CATG | 8 cut(s) | 41, 470, 478, 547, 679, 835, 853, 907 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 383, 415 |
| FaqI | GGGAC | 1 cut(s) | 310 |
| FatI | CATG | 8 cut(s) | 37, 466, 474, 543, 675, 831, 849, 903 |
| FbaI | TGATCA | 1 cut(s) | 277 |
| Fnu4HI | GCNGC | 6 cut(s) | 437, 784, 952, 955, 958, 1000 |
| FokI | GGATG | 3 cut(s) | 473, 796, 998 |
| Fsp4HI | GCNGC | 6 cut(s) | 437, 784, 952, 955, 958, 1000 |
| GlaI | GCGC | 1 cut(s) | 1003 |
| GluI | GCNGC | 6 cut(s) | 437, 784, 952, 955, 958, 1000 |
| GsaI | CCCAGC | 2 cut(s) | 237, 985 |
| GsuI | CTGGAG | 2 cut(s) | 84, 732 |
| HaeII | RGCGCY | 1 cut(s) | 1005 |
| HapII | CCGG | 1 cut(s) | 975 |
| HhaI | GCGC | 1 cut(s) | 1004 |
| Hin1II | CATG | 8 cut(s) | 41, 470, 478, 547, 679, 835, 853, 907 |
| Hin6I | GCGC | 1 cut(s) | 1002 |
| HinP1I | GCGC | 1 cut(s) | 1002 |
| HinfI | GANTC | 3 cut(s) | 265, 343, 741 |
| HpaII | CCGG | 1 cut(s) | 975 |
| HphI | GGTGA | 5 cut(s) | 132, 168, 785, 863, 923 |
| Hpy166II | GTNNAC | 2 cut(s) | 453, 793 |
| Hpy188I | TCNGA | 3 cut(s) | 348, 460, 946 |
| Hpy188III | TCNNGA | 2 cut(s) | 412, 428 |
| Hpy8I | GTNNAC | 2 cut(s) | 453, 793 |
| HpyCH4III | ACNGT | 3 cut(s) | 372, 897, 911 |
| HpyCH4IV | ACGT | 1 cut(s) | 396 |
| HpyCH4V | TGCA | 4 cut(s) | 478, 596, 679, 907 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 614, 957, 963, 987, 996, 1005 |
| HpyF3I | CTNAG | 6 cut(s) | 167, 207, 365, 525, 706, 1022 |
| HpySE526I | ACGT | 1 cut(s) | 396 |
| Hsp92II | CATG | 8 cut(s) | 41, 470, 478, 547, 679, 835, 853, 907 |
| HspAI | GCGC | 1 cut(s) | 1002 |
| Ksp22I | TGATCA | 1 cut(s) | 277 |
| Kzo9I | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| Lsp1109I | GCAGC | 2 cut(s) | 448, 966 |
| MaeII | ACGT | 1 cut(s) | 396 |
| MaeIII | GTNAC | 2 cut(s) | 332, 758 |
| MalI | GATC | 9 cut(s) | 279, 300, 353, 383, 531, 667, 751, 867, 1020 |
| MboI | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| MboII | GAAGA | 8 cut(s) | 10, 139, 391, 457, 582, 872, 875, 933 |
| MflI | RGATCY | 2 cut(s) | 665, 749 |
| MluCI | AATT | 3 cut(s) | 514, 763, 1054 |
| MlyI | GAGTC | 2 cut(s) | 259, 750 |
| MmeI | TCCRAC | 3 cut(s) | 585, 594, 718 |
| MroXI | GAANNNNTTC | 2 cut(s) | 398, 449 |
| MseI | TTAA | 3 cut(s) | 284, 633, 828 |
| MspA1I | CMGCKG | 4 cut(s) | 364, 617, 710, 957 |
| MspI | CCGG | 1 cut(s) | 975 |
| MspR9I | CCNGG | 1 cut(s) | 875 |
| MvaI | CCWGG | 1 cut(s) | 875 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 614, 957, 963, 987, 996, 1005 |
| NdeII | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| NlaIII | CATG | 8 cut(s) | 41, 470, 478, 547, 679, 835, 853, 907 |
| NlaIV | GGNNCC | 5 cut(s) | 186, 326, 410, 727, 751 |
| NmuCI | GTSAC | 1 cut(s) | 758 |
| NspI | RCATGY | 2 cut(s) | 41, 679 |
| PaqCI | CACCTGC | 1 cut(s) | 607 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 381 |
| PdmI | GAANNNNTTC | 2 cut(s) | 398, 449 |
| PfeI | GAWTC | 1 cut(s) | 343 |
| PkrI | GCNGC | 6 cut(s) | 438, 785, 953, 956, 959, 1001 |
| PleI | GAGTC | 2 cut(s) | 259, 749 |
| PpsI | GAGTC | 2 cut(s) | 259, 749 |
| PpuMI | RGGWCCY | 1 cut(s) | 324 |
| PshBI | ATTAAT | 1 cut(s) | 633 |
| PsiI | TTATAA | 1 cut(s) | 62 |
| Psp5II | RGGWCCY | 1 cut(s) | 324 |
| Psp6I | CCWGG | 1 cut(s) | 873 |
| PspFI | CCCAGC | 2 cut(s) | 233, 981 |
| PspGI | CCWGG | 1 cut(s) | 873 |
| PspN4I | GGNNCC | 5 cut(s) | 186, 326, 410, 727, 751 |
| PspPI | GGNCC | 1 cut(s) | 324 |
| PspPPI | RGGWCCY | 1 cut(s) | 324 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 386, 418, 539, 571 |
| PsuI | RGATCY | 2 cut(s) | 665, 749 |
| PvuII | CAGCTG | 3 cut(s) | 364, 617, 710 |
| RsaI | GTAC | 3 cut(s) | 374, 511, 557 |
| RsaNI | GTAC | 3 cut(s) | 373, 510, 556 |
| SaqAI | TTAA | 3 cut(s) | 284, 633, 828 |
| SatI | GCNGC | 6 cut(s) | 437, 784, 952, 955, 958, 1000 |
| Sau3AI | GATC | 9 cut(s) | 277, 298, 351, 381, 529, 665, 749, 865, 1018 |
| Sau96I | GGNCC | 1 cut(s) | 324 |
| ScaI | AGTACT | 1 cut(s) | 557 |
| SchI | GAGTC | 2 cut(s) | 259, 750 |
| ScrFI | CCNGG | 1 cut(s) | 875 |
| SinI | GGWCC | 1 cut(s) | 324 |
| Sse9I | AATT | 3 cut(s) | 514, 763, 1054 |
| SsiI | CCGC | 4 cut(s) | 783, 951, 957, 999 |
| StyD4I | CCNGG | 1 cut(s) | 873 |
| TaaI | ACNGT | 3 cut(s) | 372, 897, 911 |
| TaiI | ACGT | 1 cut(s) | 399 |
| TaqI | TCGA | 1 cut(s) | 384 |
| TasI | AATT | 3 cut(s) | 514, 763, 1054 |
| TatI | WGTACW | 1 cut(s) | 555 |
| TauI | GCSGC | 4 cut(s) | 786, 954, 960, 1002 |
| TfiI | GAWTC | 1 cut(s) | 343 |
| Tru1I | TTAA | 3 cut(s) | 284, 633, 828 |
| Tru9I | TTAA | 3 cut(s) | 284, 633, 828 |
| TscAI | CASTG | 3 cut(s) | 736, 793, 900 |
| TseFI | GTSAC | 1 cut(s) | 758 |
| TseI | GCWGC | 2 cut(s) | 436, 954 |
| Tsp45I | GTSAC | 1 cut(s) | 758 |
| TspDTI | ATGAA | 7 cut(s) | 81, 243, 458, 554, 560, 838, 848 |
| TspGWI | ACGGA | 3 cut(s) | 228, 344, 390 |
| TspRI | CASTG | 3 cut(s) | 736, 793, 900 |
| VpaK11BI | GGWCC | 1 cut(s) | 324 |
| VspI | ATTAAT | 1 cut(s) | 633 |
| XceI | RCATGY | 2 cut(s) | 41, 679 |
| XmnI | GAANNNNTTC | 2 cut(s) | 398, 449 |
| ZrmI | AGTACT | 1 cut(s) | 557 |