Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 69 |
| Acc36I | ACCTGC | 1 cut(s) | 69 |
| Acc65I | GGTACC | 1 cut(s) | 89 |
| AccB1I | GGYRCC | 1 cut(s) | 89 |
| AccBSI | CCGCTC | 1 cut(s) | 87 |
| AccIII | TCCGGA | 1 cut(s) | 662 |
| AciI | CCGC | 3 cut(s) | 87, 582, 705 |
| AclWI | GGATC | 5 cut(s) | 194, 327, 340, 375, 388 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfaI | GTAC | 3 cut(s) | 91, 433, 439 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 329, 533, 699 |
| AgeI | ACCGGT | 1 cut(s) | 204 |
| AgsI | TTSAA | 1 cut(s) | 509 |
| AhlI | ACTAGT | 2 cut(s) | 359, 434 |
| AjnI | CCWGG | 2 cut(s) | 92, 498 |
| AluBI | AGCT | 5 cut(s) | 136, 199, 646, 668, 739 |
| AluI | AGCT | 5 cut(s) | 136, 199, 646, 668, 739 |
| Alw21I | GWGCWC | 2 cut(s) | 648, 741 |
| AlwI | GGATC | 5 cut(s) | 194, 327, 340, 375, 388 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 323 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| Aor13HI | TCCGGA | 1 cut(s) | 662 |
| AoxI | GGCC | 1 cut(s) | 320 |
| ApeKI | GCWGC | 3 cut(s) | 50, 271, 668 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| AsiGI | ACCGGT | 1 cut(s) | 204 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 513 |
| Asp718I | GGTACC | 1 cut(s) | 89 |
| AspS9I | GGNCC | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 2 cut(s) | 488, 548 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| BaeGI | GKGCMC | 1 cut(s) | 306 |
| BamHI | GGATCC | 2 cut(s) | 332, 380 |
| BanI | GGYRCC | 1 cut(s) | 89 |
| BanII | GRGCYC | 2 cut(s) | 648, 741 |
| BbsI | GAAGAC | 1 cut(s) | 566 |
| Bbv12I | GWGCWC | 2 cut(s) | 648, 741 |
| BbvI | GCAGC | 3 cut(s) | 62, 283, 655 |
| BccI | CCATC | 1 cut(s) | 26 |
| BceAI | ACGGC | 1 cut(s) | 691 |
| BciT130I | CCWGG | 2 cut(s) | 94, 500 |
| BcuI | ACTAGT | 2 cut(s) | 359, 434 |
| BfaI | CTAG | 3 cut(s) | 360, 429, 435 |
| BfmI | CTRYAG | 2 cut(s) | 108, 168 |
| BfuAI | ACCTGC | 1 cut(s) | 69 |
| BisI | GCNGC | 4 cut(s) | 51, 272, 583, 669 |
| BlpI | GCTNAGC | 2 cut(s) | 647, 740 |
| BlsI | GCNGC | 4 cut(s) | 52, 273, 584, 670 |
| BmcAI | AGTACT | 2 cut(s) | 433, 439 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 500 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 1 cut(s) | 320 |
| BmiI | GGNNCC | 4 cut(s) | 91, 245, 334, 382 |
| BmrFI | CCNGG | 2 cut(s) | 94, 500 |
| BpiI | GAAGAC | 1 cut(s) | 566 |
| BpmI | CTGGAG | 1 cut(s) | 179 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 647, 740 |
| BpuEI | CTTGAG | 4 cut(s) | 113, 239, 662, 755 |
| BsaBI | GATNNNNATC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 570 |
| BsaWI | WCCGGW | 3 cut(s) | 204, 662, 692 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 329, 533, 699 |
| Bse118I | RCCGGY | 1 cut(s) | 204 |
| Bse8I | GATNNNNATC | 1 cut(s) | 122 |
| BseAI | TCCGGA | 1 cut(s) | 662 |
| BseBI | CCWGG | 2 cut(s) | 94, 500 |
| BseDI | CCNNGG | 2 cut(s) | 27, 570 |
| BseGI | GGATG | 2 cut(s) | 37, 416 |
| BseJI | GATNNNNATC | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 329, 533, 699 |
| BseMII | CTCAG | 2 cut(s) | 661, 754 |
| BseRI | GAGGAG | 2 cut(s) | 403, 501 |
| BseSI | GKGCMC | 1 cut(s) | 306 |
| BseXI | GCAGC | 3 cut(s) | 62, 283, 655 |
| BseYI | CCCAGC | 3 cut(s) | 15, 606, 699 |
| BshFI | GGCC | 1 cut(s) | 322 |
| BshNI | GGYRCC | 1 cut(s) | 89 |
| BshTI | ACCGGT | 1 cut(s) | 204 |
| BsiHKAI | GWGCWC | 2 cut(s) | 648, 741 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 3 cut(s) | 205, 663, 693 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 329, 533, 699 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsnI | GGCC | 1 cut(s) | 322 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 3 cut(s) | 306, 648, 741 |
| Bsp13I | TCCGGA | 1 cut(s) | 662 |
| Bsp143I | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 647, 740 |
| BspACI | CCGC | 3 cut(s) | 87, 582, 705 |
| BspANI | GGCC | 1 cut(s) | 322 |
| BspCNI | CTCAG | 2 cut(s) | 660, 753 |
| BspEI | TCCGGA | 1 cut(s) | 662 |
| BspLI | GGNNCC | 4 cut(s) | 91, 245, 334, 382 |
| BspMAI | CTGCAG | 1 cut(s) | 172 |
| BspMI | ACCTGC | 1 cut(s) | 69 |
| BspPI | GGATC | 5 cut(s) | 194, 327, 340, 375, 388 |
| BspT107I | GGYRCC | 1 cut(s) | 89 |
| BsrBI | CCGCTC | 1 cut(s) | 87 |
| BsrFI | RCCGGY | 1 cut(s) | 204 |
| BssAI | RCCGGY | 1 cut(s) | 204 |
| BssECI | CCNNGG | 2 cut(s) | 27, 570 |
| BssMI | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 500 |
| Bst4CI | ACNGT | 5 cut(s) | 472, 522, 536, 623, 716 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstDEI | CTNAG | 2 cut(s) | 647, 740 |
| BstF5I | GGATG | 2 cut(s) | 37, 416 |
| BstKTI | GATC | 7 cut(s) | 115, 189, 317, 335, 383, 391, 496 |
| BstMBI | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 84, 588, 612, 750 |
| BstNI | CCWGG | 2 cut(s) | 94, 500 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 2 cut(s) | 92, 498 |
| BstSFI | CTRYAG | 2 cut(s) | 108, 168 |
| BstSLI | GKGCMC | 1 cut(s) | 306 |
| BstV1I | GCAGC | 3 cut(s) | 62, 283, 655 |
| BstV2I | GAAGAC | 1 cut(s) | 566 |
| BstX2I | RGATCY | 3 cut(s) | 186, 332, 380 |
| BstYI | RGATCY | 3 cut(s) | 186, 332, 380 |
| BsuRI | GGCC | 1 cut(s) | 322 |
| BtsCI | GGATG | 2 cut(s) | 37, 416 |
| BtsIMutI | CAGTG | 1 cut(s) | 518 |
| BveI | ACCTGC | 1 cut(s) | 69 |
| CaiI | CAGNNNCTG | 1 cut(s) | 323 |
| Cfr10I | RCCGGY | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 1 cut(s) | 320 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 3 cut(s) | 90, 432, 438 |
| CspAI | ACCGGT | 1 cut(s) | 204 |
| CviAII | CATG | 7 cut(s) | 70, 299, 307, 454, 475, 529, 556 |
| CviQI | GTAC | 3 cut(s) | 90, 432, 438 |
| DdeI | CTNAG | 2 cut(s) | 647, 740 |
| DpnI | GATC | 7 cut(s) | 114, 188, 316, 334, 382, 390, 495 |
| DpnII | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| DraI | TTTAAA | 1 cut(s) | 786 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Ecl136II | GAGCTC | 2 cut(s) | 646, 739 |
| Eco24I | GRGCYC | 2 cut(s) | 648, 741 |
| Eco53kI | GAGCTC | 2 cut(s) | 646, 739 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoICRI | GAGCTC | 2 cut(s) | 646, 739 |
| EcoO109I | RGGNCCY | 1 cut(s) | 320 |
| EcoRII | CCWGG | 2 cut(s) | 92, 498 |
| EcoT38I | GRGCYC | 2 cut(s) | 648, 741 |
| FaeI | CATG | 7 cut(s) | 73, 302, 310, 457, 478, 532, 559 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 7 cut(s) | 69, 298, 306, 453, 474, 528, 555 |
| Fnu4HI | GCNGC | 4 cut(s) | 51, 272, 583, 669 |
| FokI | GGATG | 2 cut(s) | 44, 403 |
| FriOI | GRGCYC | 2 cut(s) | 648, 741 |
| Fsp4HI | GCNGC | 4 cut(s) | 51, 272, 583, 669 |
| FspBI | CTAG | 3 cut(s) | 360, 429, 435 |
| GluI | GCNGC | 4 cut(s) | 51, 272, 583, 669 |
| GsaI | CCCAGC | 3 cut(s) | 19, 610, 703 |
| GsuI | CTGGAG | 1 cut(s) | 179 |
| HaeIII | GGCC | 1 cut(s) | 322 |
| HapII | CCGG | 3 cut(s) | 205, 663, 693 |
| Hin1II | CATG | 7 cut(s) | 73, 302, 310, 457, 478, 532, 559 |
| HincII | GTYRAC | 3 cut(s) | 285, 357, 400 |
| HindII | GTYRAC | 3 cut(s) | 285, 357, 400 |
| HinfI | GANTC | 3 cut(s) | 100, 123, 178 |
| HpaII | CCGG | 3 cut(s) | 205, 663, 693 |
| HphI | GGTGA | 2 cut(s) | 488, 548 |
| Hpy166II | GTNNAC | 4 cut(s) | 99, 285, 357, 400 |
| Hpy188I | TCNGA | 5 cut(s) | 117, 183, 292, 571, 758 |
| Hpy188III | TCNNGA | 4 cut(s) | 247, 263, 641, 663 |
| Hpy8I | GTNNAC | 4 cut(s) | 99, 285, 357, 400 |
| HpyAV | CCTTC | 3 cut(s) | 430, 451, 524 |
| HpyCH4III | ACNGT | 5 cut(s) | 472, 522, 536, 623, 716 |
| HpyCH4V | TGCA | 3 cut(s) | 170, 310, 532 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 84, 588, 612, 750 |
| HpyF3I | CTNAG | 2 cut(s) | 647, 740 |
| Hsp92II | CATG | 7 cut(s) | 73, 302, 310, 457, 478, 532, 559 |
| Kpn2I | TCCGGA | 1 cut(s) | 662 |
| KpnI | GGTACC | 1 cut(s) | 93 |
| Kzo9I | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| LmnI | GCTCC | 3 cut(s) | 84, 133, 665 |
| Lsp1109I | GCAGC | 3 cut(s) | 62, 283, 655 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeI | CTAG | 3 cut(s) | 360, 429, 435 |
| MaeIII | GTNAC | 1 cut(s) | 707 |
| MalI | GATC | 7 cut(s) | 114, 188, 316, 334, 382, 390, 495 |
| MbiI | CCGCTC | 1 cut(s) | 87 |
| MboI | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| MboII | GAAGA | 4 cut(s) | 289, 473, 503, 571 |
| MflI | RGATCY | 3 cut(s) | 186, 332, 380 |
| MhlI | GDGCHC | 3 cut(s) | 306, 648, 741 |
| MluCI | AATT | 1 cut(s) | 346 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MroI | TCCGGA | 1 cut(s) | 662 |
| MroXI | GAANNNNTTC | 1 cut(s) | 513 |
| MseI | TTAA | 4 cut(s) | 156, 339, 345, 785 |
| MspA1I | CMGCKG | 1 cut(s) | 199 |
| MspI | CCGG | 3 cut(s) | 205, 663, 693 |
| MspR9I | CCNGG | 2 cut(s) | 94, 500 |
| MvaI | CCWGG | 2 cut(s) | 94, 500 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 84, 588, 612, 750 |
| NdeII | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| NlaIII | CATG | 7 cut(s) | 73, 302, 310, 457, 478, 532, 559 |
| NlaIV | GGNNCC | 4 cut(s) | 91, 245, 334, 382 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PaqCI | CACCTGC | 1 cut(s) | 69 |
| PdmI | GAANNNNTTC | 1 cut(s) | 513 |
| PfeI | GAWTC | 2 cut(s) | 123, 178 |
| PinAI | ACCGGT | 1 cut(s) | 204 |
| PkrI | GCNGC | 4 cut(s) | 52, 273, 584, 670 |
| PleI | GAGTC | 1 cut(s) | 94 |
| PpsI | GAGTC | 1 cut(s) | 94 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| Psp124BI | GAGCTC | 2 cut(s) | 648, 741 |
| Psp6I | CCWGG | 2 cut(s) | 92, 498 |
| PspFI | CCCAGC | 3 cut(s) | 15, 606, 699 |
| PspGI | CCWGG | 2 cut(s) | 92, 498 |
| PspN4I | GGNNCC | 4 cut(s) | 91, 245, 334, 382 |
| PspPI | GGNCC | 1 cut(s) | 320 |
| PstI | CTGCAG | 1 cut(s) | 172 |
| PstNI | CAGNNNCTG | 1 cut(s) | 323 |
| PsuI | RGATCY | 3 cut(s) | 186, 332, 380 |
| PvuII | CAGCTG | 1 cut(s) | 199 |
| RsaI | GTAC | 3 cut(s) | 91, 433, 439 |
| RsaNI | GTAC | 3 cut(s) | 90, 432, 438 |
| SacI | GAGCTC | 2 cut(s) | 648, 741 |
| SaqAI | TTAA | 4 cut(s) | 156, 339, 345, 785 |
| SatI | GCNGC | 4 cut(s) | 51, 272, 583, 669 |
| Sau3AI | GATC | 7 cut(s) | 112, 186, 314, 332, 380, 388, 493 |
| Sau96I | GGNCC | 1 cut(s) | 320 |
| ScaI | AGTACT | 2 cut(s) | 433, 439 |
| SchI | GAGTC | 1 cut(s) | 94 |
| ScrFI | CCNGG | 2 cut(s) | 94, 500 |
| SduI | GDGCHC | 3 cut(s) | 306, 648, 741 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfcI | CTRYAG | 2 cut(s) | 108, 168 |
| SmlI | CTYRAG | 4 cut(s) | 128, 254, 641, 734 |
| SmoI | CTYRAG | 4 cut(s) | 128, 254, 641, 734 |
| SpeI | ACTAGT | 2 cut(s) | 359, 434 |
| Sse9I | AATT | 1 cut(s) | 346 |
| SsiI | CCGC | 3 cut(s) | 87, 582, 705 |
| SspMI | CTAG | 3 cut(s) | 360, 429, 435 |
| SstI | GAGCTC | 2 cut(s) | 648, 741 |
| StyD4I | CCNGG | 2 cut(s) | 92, 498 |
| TaaI | ACNGT | 5 cut(s) | 472, 522, 536, 623, 716 |
| TasI | AATT | 1 cut(s) | 346 |
| TatI | WGTACW | 2 cut(s) | 431, 437 |
| TauI | GCSGC | 1 cut(s) | 585 |
| TfiI | GAWTC | 2 cut(s) | 123, 178 |
| Tru1I | TTAA | 4 cut(s) | 156, 339, 345, 785 |
| Tru9I | TTAA | 4 cut(s) | 156, 339, 345, 785 |
| TscAI | CASTG | 1 cut(s) | 525 |
| TseI | GCWGC | 3 cut(s) | 50, 271, 668 |
| TspDTI | ATGAA | 3 cut(s) | 287, 470, 572 |
| TspRI | CASTG | 1 cut(s) | 525 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 513 |
| XspI | CTAG | 3 cut(s) | 360, 429, 435 |
| ZrmI | AGTACT | 2 cut(s) | 433, 439 |