Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Beta-prop_KIB1-4 | PF03478 | 79 - 327 | 1.7e-30 | KIB1-4 beta-propeller |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 728, 928 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 412 |
| AccI | GTMKAC | 2 cut(s) | 258, 669 |
| AciI | CCGC | 1 cut(s) | 478 |
| AclWI | GGATC | 2 cut(s) | 506, 519 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 1 cut(s) | 846 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 412 |
| AflIII | ACRYGT | 1 cut(s) | 173 |
| AgsI | TTSAA | 4 cut(s) | 39, 475, 841, 892 |
| AhlI | ACTAGT | 1 cut(s) | 26 |
| AjiI | CACGTC | 1 cut(s) | 176 |
| AluBI | AGCT | 6 cut(s) | 190, 401, 451, 471, 496, 817 |
| AluI | AGCT | 6 cut(s) | 190, 401, 451, 471, 496, 817 |
| Alw21I | GWGCWC | 1 cut(s) | 446 |
| Alw26I | GTCTC | 2 cut(s) | 59, 959 |
| AlwI | GGATC | 2 cut(s) | 506, 519 |
| AoxI | GGCC | 4 cut(s) | 182, 281, 460, 486 |
| ApeKI | GCWGC | 2 cut(s) | 122, 934 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 389 |
| AspLEI | GCGC | 1 cut(s) | 774 |
| AspS9I | GGNCC | 2 cut(s) | 460, 487 |
| AsuC2I | CCSGG | 1 cut(s) | 216 |
| AsuII | TTCGAA | 1 cut(s) | 829 |
| BamHI | GGATCC | 1 cut(s) | 511 |
| Bbv12I | GWGCWC | 1 cut(s) | 446 |
| BbvI | GCAGC | 2 cut(s) | 109, 946 |
| BccI | CCATC | 3 cut(s) | 110, 174, 420 |
| BceAI | ACGGC | 1 cut(s) | 447 |
| BcnI | CCSGG | 1 cut(s) | 216 |
| BcoDI | GTCTC | 2 cut(s) | 59, 959 |
| BcuI | ACTAGT | 1 cut(s) | 26 |
| BfaI | CTAG | 3 cut(s) | 27, 275, 362 |
| BfuAI | ACCTGC | 2 cut(s) | 728, 928 |
| BisI | GCNGC | 2 cut(s) | 123, 935 |
| BlsI | GCNGC | 2 cut(s) | 124, 936 |
| Bme1390I | CCNGG | 1 cut(s) | 216 |
| BmgBI | CACGTC | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 2 cut(s) | 460, 487 |
| BmiI | GGNNCC | 3 cut(s) | 99, 489, 513 |
| BmrFI | CCNGG | 1 cut(s) | 216 |
| BmsI | GCATC | 2 cut(s) | 407, 634 |
| BpmI | CTGGAG | 1 cut(s) | 473 |
| Bpu10I | CCTNAGC | 1 cut(s) | 186 |
| Bpu14I | TTCGAA | 1 cut(s) | 829 |
| BpuEI | CTTGAG | 1 cut(s) | 760 |
| BpuMI | CCSGG | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 1 cut(s) | 955 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 412 |
| BseDI | CCNNGG | 1 cut(s) | 955 |
| BseGI | GGATG | 4 cut(s) | 70, 207, 422, 431 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 412 |
| BseRI | GAGGAG | 1 cut(s) | 603 |
| BseXI | GCAGC | 2 cut(s) | 109, 946 |
| BsgI | GTGCAG | 2 cut(s) | 706, 953 |
| BshFI | GGCC | 4 cut(s) | 184, 283, 462, 488 |
| BsiHKAI | GWGCWC | 1 cut(s) | 446 |
| BsiSI | CCGG | 1 cut(s) | 216 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 412 |
| BsmAI | GTCTC | 2 cut(s) | 59, 959 |
| BsmI | GAATGC | 1 cut(s) | 142 |
| BsnI | GGCC | 4 cut(s) | 184, 283, 462, 488 |
| Bsp119I | TTCGAA | 1 cut(s) | 829 |
| Bsp1286I | GDGCHC | 1 cut(s) | 446 |
| Bsp143I | GATC | 2 cut(s) | 220, 511 |
| BspACI | CCGC | 1 cut(s) | 478 |
| BspANI | GGCC | 4 cut(s) | 184, 283, 462, 488 |
| BspLI | GGNNCC | 3 cut(s) | 99, 489, 513 |
| BspMI | ACCTGC | 2 cut(s) | 728, 928 |
| BspPI | GGATC | 2 cut(s) | 506, 519 |
| BspT104I | TTCGAA | 1 cut(s) | 829 |
| BssECI | CCNNGG | 1 cut(s) | 955 |
| BssMI | GATC | 2 cut(s) | 220, 511 |
| BssNAI | GTATAC | 1 cut(s) | 670 |
| BssT1I | CCWWGG | 1 cut(s) | 955 |
| Bst1107I | GTATAC | 1 cut(s) | 670 |
| Bst4CI | ACNGT | 1 cut(s) | 332 |
| BstBI | TTCGAA | 1 cut(s) | 829 |
| BstC8I | GCNNGC | 3 cut(s) | 307, 339, 486 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstF5I | GGATG | 4 cut(s) | 70, 207, 422, 431 |
| BstHHI | GCGC | 1 cut(s) | 774 |
| BstKTI | GATC | 2 cut(s) | 223, 514 |
| BstMAI | GTCTC | 2 cut(s) | 59, 959 |
| BstMBI | GATC | 2 cut(s) | 220, 511 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 211, 468 |
| BstSCI | CCNGG | 1 cut(s) | 214 |
| BstV1I | GCAGC | 2 cut(s) | 109, 946 |
| BstX2I | RGATCY | 1 cut(s) | 511 |
| BstYI | RGATCY | 1 cut(s) | 511 |
| BstZ17I | GTATAC | 1 cut(s) | 670 |
| BsuRI | GGCC | 4 cut(s) | 184, 283, 462, 488 |
| BtrI | CACGTC | 1 cut(s) | 176 |
| BtsCI | GGATG | 4 cut(s) | 70, 207, 422, 431 |
| BtsIMutI | CAGTG | 1 cut(s) | 561 |
| BveI | ACCTGC | 2 cut(s) | 728, 928 |
| Cac8I | GCNNGC | 3 cut(s) | 307, 339, 486 |
| CfoI | GCGC | 1 cut(s) | 774 |
| Cfr13I | GGNCC | 2 cut(s) | 460, 487 |
| Csp6I | GTAC | 1 cut(s) | 845 |
| CviAII | CATG | 3 cut(s) | 110, 202, 407 |
| CviQI | GTAC | 1 cut(s) | 845 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 2 cut(s) | 222, 513 |
| DpnII | GATC | 2 cut(s) | 220, 511 |
| Eco130I | CCWWGG | 1 cut(s) | 955 |
| Eco147I | AGGCCT | 1 cut(s) | 283 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| EcoO109I | RGGNCCY | 1 cut(s) | 487 |
| EcoT14I | CCWWGG | 1 cut(s) | 955 |
| EcoT22I | ATGCAT | 1 cut(s) | 351 |
| ErhI | CCWWGG | 1 cut(s) | 955 |
| FaeI | CATG | 3 cut(s) | 113, 205, 410 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 485, 517, 801, 833 |
| FatI | CATG | 3 cut(s) | 109, 201, 406 |
| FauI | CCCGC | 1 cut(s) | 471 |
| FblI | GTMKAC | 2 cut(s) | 258, 669 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 935 |
| FokI | GGATG | 4 cut(s) | 77, 194, 429, 438 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 935 |
| FspBI | CTAG | 3 cut(s) | 27, 275, 362 |
| GlaI | GCGC | 1 cut(s) | 773 |
| GluI | GCNGC | 2 cut(s) | 123, 935 |
| GsuI | CTGGAG | 1 cut(s) | 473 |
| HaeIII | GGCC | 4 cut(s) | 184, 283, 462, 488 |
| HapII | CCGG | 1 cut(s) | 216 |
| HhaI | GCGC | 1 cut(s) | 774 |
| Hin1II | CATG | 3 cut(s) | 113, 205, 410 |
| Hin6I | GCGC | 1 cut(s) | 772 |
| HinP1I | GCGC | 1 cut(s) | 772 |
| HincII | GTYRAC | 2 cut(s) | 679, 867 |
| HindII | GTYRAC | 2 cut(s) | 679, 867 |
| HinfI | GANTC | 8 cut(s) | 35, 365, 432, 566, 685, 696, 800, 967 |
| HpaII | CCGG | 1 cut(s) | 216 |
| Hpy166II | GTNNAC | 5 cut(s) | 259, 670, 679, 867, 898 |
| Hpy188I | TCNGA | 1 cut(s) | 247 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 224, 362, 382 |
| Hpy8I | GTNNAC | 5 cut(s) | 259, 670, 679, 867, 898 |
| Hpy99I | CGWCG | 1 cut(s) | 180 |
| HpyAV | CCTTC | 2 cut(s) | 242, 525 |
| HpyCH4III | ACNGT | 1 cut(s) | 332 |
| HpyCH4IV | ACGT | 2 cut(s) | 175, 825 |
| HpyCH4V | TGCA | 7 cut(s) | 132, 152, 349, 420, 723, 823, 934 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 211, 468 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| HpySE526I | ACGT | 2 cut(s) | 175, 825 |
| Hsp92II | CATG | 3 cut(s) | 113, 205, 410 |
| HspAI | GCGC | 1 cut(s) | 772 |
| Kzo9I | GATC | 2 cut(s) | 220, 511 |
| LmnI | GCTCC | 3 cut(s) | 441, 454, 481 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 946 |
| LweI | GCATC | 2 cut(s) | 407, 634 |
| MaeI | CTAG | 3 cut(s) | 27, 275, 362 |
| MaeII | ACGT | 2 cut(s) | 175, 825 |
| MaeIII | GTNAC | 2 cut(s) | 22, 877 |
| MalI | GATC | 2 cut(s) | 222, 513 |
| MboI | GATC | 2 cut(s) | 220, 511 |
| MboII | GAAGA | 2 cut(s) | 705, 843 |
| MflI | RGATCY | 1 cut(s) | 511 |
| MhlI | GDGCHC | 1 cut(s) | 446 |
| MluCI | AATT | 3 cut(s) | 231, 292, 733 |
| MlyI | GAGTC | 1 cut(s) | 961 |
| MnlI | CCTC | 5 cut(s) | 24, 207, 294, 581, 584 |
| Mph1103I | ATGCAT | 1 cut(s) | 351 |
| MroXI | GAANNNNTTC | 1 cut(s) | 389 |
| MseI | TTAA | 6 cut(s) | 50, 270, 291, 522, 714, 947 |
| MslI | CAYNNNNRTG | 2 cut(s) | 178, 354 |
| MspI | CCGG | 1 cut(s) | 216 |
| MspR9I | CCNGG | 1 cut(s) | 216 |
| Mva1269I | GAATGC | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 211, 468 |
| NciI | CCSGG | 1 cut(s) | 216 |
| NdeII | GATC | 2 cut(s) | 220, 511 |
| NlaIII | CATG | 3 cut(s) | 113, 205, 410 |
| NlaIV | GGNNCC | 3 cut(s) | 99, 489, 513 |
| NmuCI | GTSAC | 2 cut(s) | 22, 877 |
| NsiI | ATGCAT | 1 cut(s) | 351 |
| NspV | TTCGAA | 1 cut(s) | 829 |
| PceI | AGGCCT | 1 cut(s) | 283 |
| PctI | GAATGC | 1 cut(s) | 142 |
| PdmI | GAANNNNTTC | 1 cut(s) | 389 |
| PfeI | GAWTC | 7 cut(s) | 35, 365, 432, 566, 685, 696, 800 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 412 |
| PkrI | GCNGC | 2 cut(s) | 124, 936 |
| PleI | GAGTC | 1 cut(s) | 961 |
| PpsI | GAGTC | 1 cut(s) | 961 |
| PspN4I | GGNNCC | 3 cut(s) | 99, 489, 513 |
| PspPI | GGNCC | 2 cut(s) | 460, 487 |
| PsuI | RGATCY | 1 cut(s) | 511 |
| RsaI | GTAC | 1 cut(s) | 846 |
| RsaNI | GTAC | 1 cut(s) | 845 |
| RseI | CAYNNNNRTG | 2 cut(s) | 178, 354 |
| SaqAI | TTAA | 6 cut(s) | 50, 270, 291, 522, 714, 947 |
| SatI | GCNGC | 2 cut(s) | 123, 935 |
| Sau3AI | GATC | 2 cut(s) | 220, 511 |
| Sau96I | GGNCC | 2 cut(s) | 460, 487 |
| SchI | GAGTC | 1 cut(s) | 961 |
| ScrFI | CCNGG | 1 cut(s) | 216 |
| SduI | GDGCHC | 1 cut(s) | 446 |
| SfaNI | GCATC | 2 cut(s) | 407, 634 |
| SfuI | TTCGAA | 1 cut(s) | 829 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 178, 354 |
| SmlI | CTYRAG | 1 cut(s) | 775 |
| SmoI | CTYRAG | 1 cut(s) | 775 |
| SpeI | ACTAGT | 1 cut(s) | 26 |
| Sse9I | AATT | 3 cut(s) | 231, 292, 733 |
| SseBI | AGGCCT | 1 cut(s) | 283 |
| SsiI | CCGC | 1 cut(s) | 478 |
| SspMI | CTAG | 3 cut(s) | 27, 275, 362 |
| StuI | AGGCCT | 1 cut(s) | 283 |
| StyD4I | CCNGG | 1 cut(s) | 214 |
| StyI | CCWWGG | 1 cut(s) | 955 |
| TaaI | ACNGT | 1 cut(s) | 332 |
| TaiI | ACGT | 2 cut(s) | 178, 828 |
| TaqI | TCGA | 3 cut(s) | 105, 178, 829 |
| TasI | AATT | 3 cut(s) | 231, 292, 733 |
| TatI | WGTACW | 1 cut(s) | 844 |
| TfiI | GAWTC | 7 cut(s) | 35, 365, 432, 566, 685, 696, 800 |
| Tru1I | TTAA | 6 cut(s) | 50, 270, 291, 522, 714, 947 |
| Tru9I | TTAA | 6 cut(s) | 50, 270, 291, 522, 714, 947 |
| TscAI | CASTG | 1 cut(s) | 568 |
| TseFI | GTSAC | 2 cut(s) | 22, 877 |
| TseI | GCWGC | 2 cut(s) | 122, 934 |
| Tsp45I | GTSAC | 2 cut(s) | 22, 877 |
| TspDTI | ATGAA | 3 cut(s) | 17, 104, 571 |
| TspRI | CASTG | 1 cut(s) | 568 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 412 |
| XbaI | TCTAGA | 1 cut(s) | 361 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 619 |
| XmiI | GTMKAC | 2 cut(s) | 258, 669 |
| XmnI | GAANNNNTTC | 1 cut(s) | 389 |
| XspI | CTAG | 3 cut(s) | 27, 275, 362 |
| Zsp2I | ATGCAT | 1 cut(s) | 351 |